CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
N | 329 | T329T | syn | acG | acT | 12172 | 8585 | 0.705307 | 29258-29260 | |
N | 329 | T329T | syn | acG | acA | 12172 | 3246 | 0.266678 | 29258-29260 | |
N | 329 | T329T | syn | acG | acC | 12172 | 341 | 0.0280151 | 29258-29260 |
Details of the mutation T329T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
N | 329 | T329T | acG | acT | 8585 | 12172 | All | 0.001642 |
N | 329 | T329T | acG | acA | 3246 | 12172 | All | 0.000621 |
N | 329 | T329T | acG | acC | 341 | 12172 | All | 0.000065 |
N | 329 | T329T | acG | acA | 1177 | 1187 | AY.120 | 0.04376 |
N | 329 | T329T | acG | acT | 8 | 1187 | AY.120 | 0.000297 |
N | 329 | T329T | acG | acC | 2 | 1187 | AY.120 | 0.000074 |
N | 329 | T329T | acG | acT | 669 | 1178 | B.1.1.7 | 0.000599 |
N | 329 | T329T | acG | acA | 406 | 1178 | B.1.1.7 | 0.000363 |
N | 329 | T329T | acG | acC | 103 | 1178 | B.1.1.7 | 0.000092 |
N | 329 | T329T | acG | acT | 1013 | 1014 | B.1.1.50 | 0.687712 |
N | 329 | T329T | acG | acA | 1 | 1014 | B.1.1.50 | 0.000679 |
N | 329 | T329T | acG | acT | 681 | 814 | AY.4 | 0.00106 |
N | 329 | T329T | acG | acA | 75 | 814 | AY.4 | 0.000117 |
N | 329 | T329T | acG | acC | 58 | 814 | AY.4 | 0.00009 |
N | 329 | T329T | acG | acT | 607 | 660 | AY.103 | 0.003769 |
N | 329 | T329T | acG | acA | 51 | 660 | AY.103 | 0.000317 |
N | 329 | T329T | acG | acC | 2 | 660 | AY.103 | 0.000012 |
N | 329 | T329T | acG | acT | 538 | 538 | B.1.1.153 | 0.589266 |
N | 329 | T329T | acG | acT | 340 | 519 | B.1.617.2 | 0.00128 |
N | 329 | T329T | acG | acA | 168 | 519 | B.1.617.2 | 0.000633 |
N | 329 | T329T | acG | acC | 11 | 519 | B.1.617.2 | 0.000041 |
N | 329 | T329T | acG | acA | 426 | 467 | AY.39 | 0.010527 |
N | 329 | T329T | acG | acT | 40 | 467 | AY.39 | 0.000988 |
N | 329 | T329T | acG | acC | 1 | 467 | AY.39 | 0.000025 |
N | 329 | T329T | acG | acT | 287 | 357 | AY.43 | 0.001272 |
N | 329 | T329T | acG | acA | 65 | 357 | AY.43 | 0.000288 |
N | 329 | T329T | acG | acC | 5 | 357 | AY.43 | 0.000022 |
N | 329 | T329T | acG | acT | 288 | 288 | B.1.425 | 0.862275 |
N | 329 | T329T | acG | acT | 257 | 257 | C.16 | 0.272534 |
N | 329 | T329T | acG | acT | 223 | 236 | AY.20 | 0.008667 |
N | 329 | T329T | acG | acA | 8 | 236 | AY.20 | 0.000311 |
N | 329 | T329T | acG | acC | 5 | 236 | AY.20 | 0.000194 |
N | 329 | T329T | acG | acT | 224 | 224 | AY.116.1 | 0.06976 |
N | 329 | T329T | acG | acT | 172 | 223 | B.1.2 | 0.001515 |
N | 329 | T329T | acG | acA | 27 | 223 | B.1.2 | 0.000238 |
N | 329 | T329T | acG | acC | 24 | 223 | B.1.2 | 0.000211 |
N | 329 | T329T | acG | acT | 184 | 215 | AY.25 | 0.001107 |
N | 329 | T329T | acG | acA | 25 | 215 | AY.25 | 0.00015 |
N | 329 | T329T | acG | acC | 6 | 215 | AY.25 | 0.000036 |
N | 329 | T329T | acG | acT | 161 | 214 | AY.44 | 0.00098 |
N | 329 | T329T | acG | acA | 47 | 214 | AY.44 | 0.000286 |
N | 329 | T329T | acG | acC | 6 | 214 | AY.44 | 0.000037 |
N | 329 | T329T | acG | acA | 109 | 179 | AY.102 | 0.00289 |
N | 329 | T329T | acG | acT | 68 | 179 | AY.102 | 0.001803 |
N | 329 | T329T | acG | acC | 2 | 179 | AY.102 | 0.000053 |
N | 329 | T329T | acG | acT | 165 | 179 | B.1 | 0.001511 |
N | 329 | T329T | acG | acA | 10 | 179 | B.1 | 0.000092 |
N | 329 | T329T | acG | acC | 4 | 179 | B.1 | 0.000037 |
N | 329 | T329T | acG | acT | 126 | 126 | B.1.1.385 | 0.5625 |
N | 329 | T329T | acG | acA | 103 | 125 | AY.29 | 0.001625 |
N | 329 | T329T | acG | acT | 21 | 125 | AY.29 | 0.000331 |
N | 329 | T329T | acG | acC | 1 | 125 | AY.29 | 0.000016 |
N | 329 | T329T | acG | acT | 105 | 125 | B.1.1 | 0.001905 |
N | 329 | T329T | acG | acA | 11 | 125 | B.1.1 | 0.0002 |
N | 329 | T329T | acG | acC | 9 | 125 | B.1.1 | 0.000163 |
N | 329 | T329T | acG | acT | 124 | 124 | AY.107 | 0.057782 |
N | 329 | T329T | acG | acT | 108 | 111 | AY.47 | 0.003359 |
N | 329 | T329T | acG | acA | 3 | 111 | AY.47 | 0.000093 |
N | 329 | T329T | acG | acT | 109 | 109 | AY.86 | 0.090456 |
N | 329 | T329T | acG | acA | 87 | 90 | B.1.438.1 | 0.009332 |
N | 329 | T329T | acG | acT | 3 | 90 | B.1.438.1 | 0.000322 |
N | 329 | T329T | acG | acT | 89 | 89 | B.1.1.222 | 0.018156 |
N | 329 | T329T | acG | acT | 79 | 88 | AY.100 | 0.003635 |
N | 329 | T329T | acG | acA | 9 | 88 | AY.100 | 0.000414 |
N | 329 | T329T | acG | acT | 56 | 77 | P.1 | 0.000882 |
N | 329 | T329T | acG | acA | 20 | 77 | P.1 | 0.000315 |
N | 329 | T329T | acG | acC | 1 | 77 | P.1 | 0.000016 |
N | 329 | T329T | acG | acT | 74 | 76 | AY.7 | 0.014504 |
N | 329 | T329T | acG | acA | 2 | 76 | AY.7 | 0.000392 |
N | 329 | T329T | acG | acT | 67 | 72 | B.1.243 | 0.004662 |
N | 329 | T329T | acG | acA | 3 | 72 | B.1.243 | 0.000209 |
N | 329 | T329T | acG | acC | 2 | 72 | B.1.243 | 0.000139 |
N | 329 | T329T | acG | acT | 67 | 71 | B.1.177 | 0.000882 |
N | 329 | T329T | acG | acC | 2 | 71 | B.1.177 | 0.000026 |
N | 329 | T329T | acG | acA | 2 | 71 | B.1.177 | 0.000026 |
N | 329 | T329T | acG | acT | 50 | 60 | AY.33 | 0.003339 |
N | 329 | T329T | acG | acA | 10 | 60 | AY.33 | 0.000668 |
N | 329 | T329T | acG | acT | 60 | 60 | AY.4.4 | 0.02455 |
N | 329 | T329T | acG | acT | 58 | 59 | B.1.351 | 0.001724 |
N | 329 | T329T | acG | acA | 1 | 59 | B.1.351 | 0.00003 |
N | 329 | T329T | acG | acT | 56 | 56 | B.1.1.129 | 0.513761 |
N | 329 | T329T | acG | acT | 28 | 52 | AY.3 | 0.000278 |
N | 329 | T329T | acG | acA | 22 | 52 | AY.3 | 0.000219 |
N | 329 | T329T | acG | acC | 2 | 52 | AY.3 | 0.00002 |
N | 329 | T329T | acG | acT | 45 | 48 | B.1.36 | 0.006566 |
N | 329 | T329T | acG | acA | 3 | 48 | B.1.36 | 0.000438 |
N | 329 | T329T | acG | acT | 42 | 43 | B.1.126 | 0.053571 |
N | 329 | T329T | acG | acA | 1 | 43 | B.1.126 | 0.001276 |
N | 329 | T329T | acG | acA | 26 | 42 | AY.5 | 0.000537 |
N | 329 | T329T | acG | acT | 16 | 42 | AY.5 | 0.00033 |
N | 329 | T329T | acG | acA | 42 | 42 | B.1.160.18 | 0.306569 |
N | 329 | T329T | acG | acT | 35 | 40 | AY.119 | 0.001236 |
N | 329 | T329T | acG | acA | 5 | 40 | AY.119 | 0.000177 |
N | 329 | T329T | acG | acT | 27 | 37 | B.1.526 | 0.000635 |
N | 329 | T329T | acG | acA | 10 | 37 | B.1.526 | 0.000235 |
N | 329 | T329T | acG | acT | 35 | 35 | AY.34 | 0.003394 |
N | 329 | T329T | acG | acA | 20 | 34 | B.1.1.519 | 0.000794 |
N | 329 | T329T | acG | acT | 13 | 34 | B.1.1.519 | 0.000516 |
N | 329 | T329T | acG | acC | 1 | 34 | B.1.1.519 | 0.00004 |
N | 329 | T329T | acG | acT | 25 | 33 | AY.26 | 0.000708 |
N | 329 | T329T | acG | acC | 4 | 33 | AY.26 | 0.000113 |
N | 329 | T329T | acG | acA | 4 | 33 | AY.26 | 0.000113 |
N | 329 | T329T | acG | acT | 31 | 32 | AY.98.1 | 0.001501 |
N | 329 | T329T | acG | acA | 1 | 32 | AY.98.1 | 0.000048 |
N | 329 | T329T | acG | acT | 30 | 31 | P.1.7 | 0.009579 |
N | 329 | T329T | acG | acA | 1 | 31 | P.1.7 | 0.000319 |
N | 329 | T329T | acG | acT | 26 | 28 | AY.54 | 0.002479 |
N | 329 | T329T | acG | acA | 2 | 28 | AY.54 | 0.000191 |
N | 329 | T329T | acG | acT | 28 | 28 | B.1.1.305 | 0.108108 |
N | 329 | T329T | acG | acC | 23 | 28 | B.1.595 | 0.006002 |
N | 329 | T329T | acG | acT | 5 | 28 | B.1.595 | 0.001305 |
N | 329 | T329T | acG | acA | 22 | 27 | AY.4.5 | 0.002365 |
N | 329 | T329T | acG | acT | 5 | 27 | AY.4.5 | 0.000537 |
N | 329 | T329T | acG | acT | 25 | 27 | AY.61 | 0.002619 |
N | 329 | T329T | acG | acC | 2 | 27 | AY.61 | 0.00021 |
N | 329 | T329T | acG | acT | 21 | 26 | AY.42 | 0.000845 |
N | 329 | T329T | acG | acA | 5 | 26 | AY.42 | 0.000201 |
N | 329 | T329T | acG | acT | 17 | 25 | AY.46 | 0.001769 |
N | 329 | T329T | acG | acA | 7 | 25 | AY.46 | 0.000729 |
N | 329 | T329T | acG | acC | 1 | 25 | AY.46 | 0.000104 |
N | 329 | T329T | acG | acC | 17 | 25 | B.1.1.284 | 0.001826 |
N | 329 | T329T | acG | acT | 4 | 25 | B.1.1.284 | 0.00043 |
N | 329 | T329T | acG | acA | 4 | 25 | B.1.1.284 | 0.00043 |
N | 329 | T329T | acG | acT | 24 | 24 | AY.16 | 0.009112 |
N | 329 | T329T | acG | acT | 17 | 24 | B.1.1.214 | 0.000943 |
N | 329 | T329T | acG | acA | 7 | 24 | B.1.1.214 | 0.000388 |
N | 329 | T329T | acG | acA | 22 | 23 | AY.70 | 0.004587 |
N | 329 | T329T | acG | acT | 1 | 23 | AY.70 | 0.000209 |
N | 329 | T329T | acG | acT | 23 | 23 | B.1.1.28 | 0.007158 |
N | 329 | T329T | acG | acT | 22 | 22 | B.1.1.70 | 0.007503 |
N | 329 | T329T | acG | acT | 18 | 22 | B.1.160 | 0.000561 |
N | 329 | T329T | acG | acA | 4 | 22 | B.1.160 | 0.000125 |
N | 329 | T329T | acG | acT | 22 | 22 | B.1.177.4 | 0.004643 |
N | 329 | T329T | acG | acT | 22 | 22 | B.1.177.60 | 0.004806 |
N | 329 | T329T | acG | acT | 19 | 20 | AY.6 | 0.000781 |
N | 329 | T329T | acG | acA | 1 | 20 | AY.6 | 0.000041 |
N | 329 | T329T | acG | acT | 20 | 20 | B.1.1.47 | 0.106952 |
N | 329 | T329T | acG | acT | 19 | 19 | B.1.1.317 | 0.007822 |
N | 329 | T329T | acG | acT | 17 | 19 | B.1.289 | 0.045213 |
N | 329 | T329T | acG | acC | 2 | 19 | B.1.289 | 0.005319 |
N | 329 | T329T | acG | acA | 10 | 18 | AY.23 | 0.000697 |
N | 329 | T329T | acG | acT | 8 | 18 | AY.23 | 0.000558 |
N | 329 | T329T | acG | acT | 17 | 17 | B.1.36.24 | 0.104938 |
N | 329 | T329T | acG | acC | 17 | 17 | B.1.409 | 0.013281 |
N | 329 | T329T | acG | acT | 14 | 16 | AY.45 | 0.001704 |
N | 329 | T329T | acG | acA | 2 | 16 | AY.45 | 0.000243 |
N | 329 | T329T | acG | acT | 15 | 16 | B | 0.001917 |
N | 329 | T329T | acG | acA | 1 | 16 | B | 0.000128 |
N | 329 | T329T | acG | acT | 11 | 16 | B.1.617.1 | 0.001419 |
N | 329 | T329T | acG | acA | 4 | 16 | B.1.617.1 | 0.000516 |
N | 329 | T329T | acG | acC | 1 | 16 | B.1.617.1 | 0.000129 |
N | 329 | T329T | acG | acT | 15 | 15 | AY.7.1 | 0.001691 |
N | 329 | T329T | acG | acT | 14 | 15 | B.1.1.1 | 0.004574 |
N | 329 | T329T | acG | acC | 1 | 15 | B.1.1.1 | 0.000327 |
N | 329 | T329T | acG | acT | 13 | 14 | AY.46.6 | 0.000939 |
N | 329 | T329T | acG | acA | 1 | 14 | AY.46.6 | 0.000072 |
N | 329 | T329T | acG | acT | 12 | 14 | AY.9.2 | 0.000441 |
N | 329 | T329T | acG | acC | 1 | 14 | AY.9.2 | 0.000037 |
N | 329 | T329T | acG | acA | 1 | 14 | AY.9.2 | 0.000037 |
N | 329 | T329T | acG | acT | 13 | 14 | B.1.429 | 0.000306 |
N | 329 | T329T | acG | acA | 1 | 14 | B.1.429 | 0.000024 |
N | 329 | T329T | acG | acT | 10 | 14 | P.1.14 | 0.000478 |
N | 329 | T329T | acG | acC | 2 | 14 | P.1.14 | 0.000096 |
N | 329 | T329T | acG | acA | 2 | 14 | P.1.14 | 0.000096 |
N | 329 | T329T | acG | acT | 11 | 13 | AY.74 | 0.001272 |
N | 329 | T329T | acG | acA | 2 | 13 | AY.74 | 0.000231 |
N | 329 | T329T | acG | acT | 10 | 13 | AY.84 | 0.004374 |
N | 329 | T329T | acG | acA | 2 | 13 | AY.84 | 0.000875 |
N | 329 | T329T | acG | acC | 1 | 13 | AY.84 | 0.000437 |
N | 329 | T329T | acG | acT | 13 | 13 | B.1.1.291 | 0.009651 |
N | 329 | T329T | acG | acT | 13 | 13 | B.1.177.44 | 0.006746 |
N | 329 | T329T | acG | acT | 13 | 13 | B.1.427 | 0.000656 |
N | 329 | T329T | acG | acT | 12 | 12 | B.1.1.128 | 0.085106 |
N | 329 | T329T | acG | acT | 12 | 12 | B.1.1.434 | 0.004183 |
N | 329 | T329T | acG | acT | 12 | 12 | B.1.596.1 | 0.11215 |
N | 329 | T329T | acG | acA | 12 | 12 | C.36 | 0.010929 |
N | 329 | T329T | acG | acT | 7 | 10 | AY.106 | 0.002344 |
N | 329 | T329T | acG | acA | 3 | 10 | AY.106 | 0.001005 |
N | 329 | T329T | acG | acT | 8 | 10 | AY.116 | 0.002294 |
N | 329 | T329T | acG | acA | 2 | 10 | AY.116 | 0.000574 |
N | 329 | T329T | acG | acT | 8 | 10 | AY.4.2 | 0.000174 |
N | 329 | T329T | acG | acA | 2 | 10 | AY.4.2 | 0.000043 |
N | 329 | T329T | acG | acT | 10 | 10 | AY.52 | 0.008143 |
N | 329 | T329T | acG | acT | 10 | 10 | AY.59 | 0.005297 |
N | 329 | T329T | acG | acT | 9 | 9 | B.1.1.12 | 0.067164 |
N | 329 | T329T | acG | acT | 9 | 9 | B.1.1.464 | 0.013255 |
N | 329 | T329T | acG | acT | 9 | 9 | B.1.525 | 0.001018 |
N | 329 | T329T | acG | acT | 9 | 9 | B.1.600 | 0.052632 |
N | 329 | T329T | acG | acT | 6 | 9 | R.1 | 0.00054 |
N | 329 | T329T | acG | acA | 2 | 9 | R.1 | 0.00018 |
N | 329 | T329T | acG | acC | 1 | 9 | R.1 | 0.00009 |
N | 329 | T329T | acG | acT | 8 | 8 | B.1.1.33 | 0.003367 |
N | 329 | T329T | acG | acA | 5 | 8 | B.1.637 | 0.000365 |
N | 329 | T329T | acG | acT | 2 | 8 | B.1.637 | 0.000146 |
N | 329 | T329T | acG | acC | 1 | 8 | B.1.637 | 0.000073 |
N | 329 | T329T | acG | acA | 5 | 7 | AY.121 | 0.000677 |
N | 329 | T329T | acG | acT | 2 | 7 | AY.121 | 0.000271 |
N | 329 | T329T | acG | acT | 7 | 7 | AY.28 | 0.013233 |
N | 329 | T329T | acG | acT | 6 | 7 | AY.34.1 | 0.00306 |
N | 329 | T329T | acG | acA | 1 | 7 | AY.34.1 | 0.00051 |
N | 329 | T329T | acG | acT | 6 | 7 | AY.68 | 0.001642 |
N | 329 | T329T | acG | acC | 1 | 7 | AY.68 | 0.000274 |
N | 329 | T329T | acG | acA | 5 | 7 | B.1.1.216 | 0.004452 |
N | 329 | T329T | acG | acT | 2 | 7 | B.1.1.216 | 0.001781 |
N | 329 | T329T | acG | acT | 7 | 7 | B.1.1.374 | 0.016627 |
N | 329 | T329T | acG | acA | 4 | 7 | B.1.234 | 0.000528 |
N | 329 | T329T | acG | acT | 3 | 7 | B.1.234 | 0.000396 |
N | 329 | T329T | acG | acT | 7 | 7 | B.1.311 | 0.001922 |
N | 329 | T329T | acG | acA | 7 | 7 | B.1.36.38 | 0.011494 |
N | 329 | T329T | acG | acA | 4 | 7 | B.1.36.8 | 0.004 |
N | 329 | T329T | acG | acT | 3 | 7 | B.1.36.8 | 0.003 |
N | 329 | T329T | acG | acT | 7 | 7 | B.1.469 | 0.025271 |
N | 329 | T329T | acG | acT | 7 | 7 | B.1.596 | 0.00061 |
N | 329 | T329T | acG | acT | 6 | 7 | P.2 | 0.00112 |
N | 329 | T329T | acG | acA | 1 | 7 | P.2 | 0.000187 |
N | 329 | T329T | acG | acA | 5 | 6 | AY.105 | 0.003215 |
N | 329 | T329T | acG | acT | 1 | 6 | AY.105 | 0.000643 |
N | 329 | T329T | acG | acT | 6 | 6 | AY.12 | 0.001896 |
N | 329 | T329T | acG | acT | 4 | 6 | AY.14 | 0.000352 |
N | 329 | T329T | acG | acA | 2 | 6 | AY.14 | 0.000176 |
N | 329 | T329T | acG | acT | 5 | 6 | AY.62 | 0.002179 |
N | 329 | T329T | acG | acC | 1 | 6 | AY.62 | 0.000436 |
N | 329 | T329T | acG | acT | 6 | 6 | AY.9.1 | 0.000502 |
N | 329 | T329T | acG | acT | 6 | 6 | B.1.1.277 | 0.004552 |
N | 329 | T329T | acG | acT | 6 | 6 | B.1.1.301 | 0.007075 |
N | 329 | T329T | acG | acT | 3 | 6 | B.1.466.2 | 0.001174 |
N | 329 | T329T | acG | acA | 3 | 6 | B.1.466.2 | 0.001174 |
N | 329 | T329T | acG | acT | 5 | 6 | C.37 | 0.00058 |
N | 329 | T329T | acG | acA | 1 | 6 | C.37 | 0.000116 |
N | 329 | T329T | acG | acA | 5 | 5 | AD.2 | 0.001095 |
N | 329 | T329T | acG | acC | 5 | 5 | AY.111 | 0.000916 |
N | 329 | T329T | acG | acT | 4 | 5 | AY.16.1 | 0.00188 |
N | 329 | T329T | acG | acA | 1 | 5 | AY.16.1 | 0.00047 |
N | 329 | T329T | acG | acT | 4 | 5 | AY.39.1 | 0.000158 |
N | 329 | T329T | acG | acA | 1 | 5 | AY.39.1 | 0.00004 |
N | 329 | T329T | acG | acA | 4 | 5 | AY.46.1 | 0.004107 |
N | 329 | T329T | acG | acT | 1 | 5 | AY.46.1 | 0.001027 |
N | 329 | T329T | acG | acT | 5 | 5 | AY.75 | 0.00028 |
N | 329 | T329T | acG | acT | 5 | 5 | B.1.1.192 | 0.011547 |
N | 329 | T329T | acG | acT | 3 | 5 | B.1.1.294 | 0.003797 |
N | 329 | T329T | acG | acA | 2 | 5 | B.1.1.294 | 0.002532 |
N | 329 | T329T | acG | acT | 4 | 5 | B.1.1.306 | 0.001754 |
N | 329 | T329T | acG | acA | 1 | 5 | B.1.1.306 | 0.000438 |
N | 329 | T329T | acG | acT | 5 | 5 | B.1.1.311 | 0.001791 |
N | 329 | T329T | acG | acT | 5 | 5 | B.1.1.37 | 0.000964 |
N | 329 | T329T | acG | acT | 5 | 5 | B.1.1.372 | 0.003444 |
N | 329 | T329T | acG | acA | 5 | 5 | B.1.177.32 | 0.006748 |
N | 329 | T329T | acG | acT | 5 | 5 | B.1.351.3 | 0.004382 |
N | 329 | T329T | acG | acT | 5 | 5 | B.1.468 | 0.028571 |
N | 329 | T329T | acG | acA | 5 | 5 | B.1.577 | 0.003436 |
N | 329 | T329T | acG | acT | 5 | 5 | B.1.621 | 0.000443 |
N | 329 | T329T | acG | acA | 5 | 5 | P.1.10 | 0.001347 |
N | 329 | T329T | acG | acT | 3 | 5 | P.1.17 | 0.000485 |
N | 329 | T329T | acG | acA | 2 | 5 | P.1.17 | 0.000324 |
N | 329 | T329T | acG | acT | 4 | 4 | AY.117 | 0.000338 |
N | 329 | T329T | acG | acA | 3 | 4 | AY.118 | 0.000188 |
N | 329 | T329T | acG | acT | 1 | 4 | AY.118 | 0.000063 |
N | 329 | T329T | acG | acT | 4 | 4 | AY.2 | 0.001425 |
N | 329 | T329T | acG | acC | 2 | 4 | AY.32 | 0.001065 |
N | 329 | T329T | acG | acA | 1 | 4 | AY.32 | 0.000532 |
N | 329 | T329T | acG | acT | 1 | 4 | AY.32 | 0.000532 |
N | 329 | T329T | acG | acA | 4 | 4 | AY.5.3 | 0.00135 |
N | 329 | T329T | acG | acT | 2 | 4 | AY.82 | 0.002714 |
N | 329 | T329T | acG | acA | 2 | 4 | AY.82 | 0.002714 |
N | 329 | T329T | acG | acT | 4 | 4 | AY.98 | 0.000316 |
N | 329 | T329T | acG | acT | 4 | 4 | B.1.1.176 | 0.001757 |
N | 329 | T329T | acG | acT | 3 | 4 | B.1.170 | 0.012931 |
N | 329 | T329T | acG | acA | 1 | 4 | B.1.170 | 0.00431 |
N | 329 | T329T | acG | acT | 4 | 4 | B.1.223 | 0.011111 |
N | 329 | T329T | acG | acT | 3 | 4 | B.1.258 | 0.0002 |
N | 329 | T329T | acG | acA | 1 | 4 | B.1.258 | 0.000067 |
N | 329 | T329T | acG | acT | 2 | 4 | B.1.36.29 | 0.001035 |
N | 329 | T329T | acG | acA | 2 | 4 | B.1.36.29 | 0.001035 |
N | 329 | T329T | acG | acT | 4 | 4 | B.1.516 | 0.007828 |
N | 329 | T329T | acG | acT | 4 | 4 | B.1.576 | 0.003626 |
N | 329 | T329T | acG | acT | 2 | 4 | D.2 | 0.00015 |
N | 329 | T329T | acG | acC | 1 | 4 | D.2 | 0.000075 |
N | 329 | T329T | acG | acA | 1 | 4 | D.2 | 0.000075 |
N | 329 | T329T | acG | acT | 4 | 4 | Q.1 | 0.000505 |
N | 329 | T329T | acG | acT | 3 | 4 | Q.3 | 0.000435 |
N | 329 | T329T | acG | acA | 1 | 4 | Q.3 | 0.000145 |
N | 329 | T329T | acG | acT | 4 | 4 | Q.8 | 0.00066 |
N | 329 | T329T | acG | acA | 3 | 3 | 0.166667 | |
N | 329 | T329T | acG | acT | 3 | 3 | AN.1 | 0.06 |
N | 329 | T329T | acG | acT | 2 | 3 | AY.109 | 0.001479 |
N | 329 | T329T | acG | acA | 1 | 3 | AY.109 | 0.00074 |
N | 329 | T329T | acG | acT | 2 | 3 | AY.114 | 0.000462 |
N | 329 | T329T | acG | acC | 1 | 3 | AY.114 | 0.000231 |
N | 329 | T329T | acG | acT | 3 | 3 | AY.13 | 0.000483 |
N | 329 | T329T | acG | acT | 2 | 3 | AY.29.1 | 0.000441 |
N | 329 | T329T | acG | acA | 1 | 3 | AY.29.1 | 0.000221 |
N | 329 | T329T | acG | acT | 2 | 3 | AY.36 | 0.000296 |
N | 329 | T329T | acG | acA | 1 | 3 | AY.36 | 0.000148 |
N | 329 | T329T | acG | acT | 3 | 3 | AY.41 | 0.000882 |
N | 329 | T329T | acG | acA | 3 | 3 | AY.57 | 0.001969 |
N | 329 | T329T | acG | acA | 2 | 3 | AY.67 | 0.000929 |
N | 329 | T329T | acG | acT | 1 | 3 | AY.67 | 0.000464 |
N | 329 | T329T | acG | acT | 3 | 3 | AY.71 | 0.001425 |
N | 329 | T329T | acG | acT | 2 | 3 | B.1.1.189 | 0.003026 |
N | 329 | T329T | acG | acA | 1 | 3 | B.1.1.189 | 0.001513 |
N | 329 | T329T | acG | acC | 1 | 3 | B.1.1.25 | 0.000569 |
N | 329 | T329T | acG | acT | 1 | 3 | B.1.1.25 | 0.000569 |
N | 329 | T329T | acG | acA | 1 | 3 | B.1.1.25 | 0.000569 |
N | 329 | T329T | acG | acT | 3 | 3 | B.1.1.416 | 0.002715 |
N | 329 | T329T | acG | acT | 3 | 3 | B.1.1.63 | 0.001157 |
N | 329 | T329T | acG | acT | 3 | 3 | B.1.177.43 | 0.004431 |
N | 329 | T329T | acG | acT | 2 | 3 | B.1.36.22 | 0.002415 |
N | 329 | T329T | acG | acA | 1 | 3 | B.1.36.22 | 0.001208 |
N | 329 | T329T | acG | acT | 3 | 3 | B.1.396 | 0.002117 |
N | 329 | T329T | acG | acT | 3 | 3 | B.1.459 | 0.012245 |
N | 329 | T329T | acG | acT | 3 | 3 | B.1.465 | 0.011407 |
N | 329 | T329T | acG | acT | 3 | 3 | C.35 | 0.002322 |
N | 329 | T329T | acG | acT | 3 | 3 | P.1.12 | 0.001452 |
N | 329 | T329T | acG | acA | 2 | 2 | A.19 | 0.018868 |
N | 329 | T329T | acG | acT | 2 | 2 | A.2.5 | 0.000998 |
N | 329 | T329T | acG | acA | 1 | 2 | AY.113 | 0.000142 |
N | 329 | T329T | acG | acT | 1 | 2 | AY.113 | 0.000142 |
N | 329 | T329T | acG | acT | 1 | 2 | AY.120.1 | 0.000321 |
N | 329 | T329T | acG | acA | 1 | 2 | AY.120.1 | 0.000321 |
N | 329 | T329T | acG | acT | 2 | 2 | AY.37 | 0.000632 |
N | 329 | T329T | acG | acT | 1 | 2 | AY.4.2.1 | 0.000149 |
N | 329 | T329T | acG | acA | 1 | 2 | AY.4.2.1 | 0.000149 |
N | 329 | T329T | acG | acT | 2 | 2 | AY.46.3 | 0.001867 |
N | 329 | T329T | acG | acA | 2 | 2 | AY.53 | 0.000575 |
N | 329 | T329T | acG | acC | 2 | 2 | AY.72 | 0.002721 |
N | 329 | T329T | acG | acT | 2 | 2 | AY.75.1 | 0.000361 |
N | 329 | T329T | acG | acT | 2 | 2 | AY.8 | 0.001212 |
N | 329 | T329T | acG | acA | 2 | 2 | AY.80 | 0.002257 |
N | 329 | T329T | acG | acT | 2 | 2 | AY.9 | 0.000135 |
N | 329 | T329T | acG | acA | 1 | 2 | AY.92 | 0.000287 |
N | 329 | T329T | acG | acT | 1 | 2 | AY.92 | 0.000287 |
N | 329 | T329T | acG | acT | 2 | 2 | AY.99 | 0.002099 |
N | 329 | T329T | acG | acT | 2 | 2 | AZ.1 | 0.001735 |
N | 329 | T329T | acG | acT | 2 | 2 | B.1.1.135 | 0.00939 |
N | 329 | T329T | acG | acT | 1 | 2 | B.1.1.220 | 0.001859 |
N | 329 | T329T | acG | acA | 1 | 2 | B.1.1.220 | 0.001859 |
N | 329 | T329T | acG | acT | 2 | 2 | B.1.1.298 | 0.001724 |
N | 329 | T329T | acG | acT | 2 | 2 | B.1.1.318 | 0.000604 |
N | 329 | T329T | acG | acT | 2 | 2 | B.1.1.39 | 0.001019 |
N | 329 | T329T | acG | acT | 2 | 2 | B.1.1.462 | 0.017241 |
N | 329 | T329T | acG | acA | 2 | 2 | B.1.111 | 0.00235 |
N | 329 | T329T | acG | acA | 1 | 2 | B.1.201 | 0.005682 |
N | 329 | T329T | acG | acT | 1 | 2 | B.1.201 | 0.005682 |
N | 329 | T329T | acG | acT | 2 | 2 | B.1.36.10 | 0.009569 |
N | 329 | T329T | acG | acT | 2 | 2 | B.1.36.21 | 0.00432 |
N | 329 | T329T | acG | acT | 2 | 2 | B.1.400 | 0.000858 |
N | 329 | T329T | acG | acT | 2 | 2 | B.1.426 | 0.002018 |
N | 329 | T329T | acG | acT | 2 | 2 | B.1.500 | 0.105263 |
N | 329 | T329T | acG | acT | 2 | 2 | B.1.507 | 0.022472 |
N | 329 | T329T | acG | acT | 1 | 2 | B.1.551 | 0.00129 |
N | 329 | T329T | acG | acA | 1 | 2 | B.1.551 | 0.00129 |
N | 329 | T329T | acG | acT | 1 | 2 | B.1.623 | 0.000536 |
N | 329 | T329T | acG | acA | 1 | 2 | B.1.623 | 0.000536 |
N | 329 | T329T | acG | acT | 1 | 2 | B.40 | 0.000364 |
N | 329 | T329T | acG | acA | 1 | 2 | B.40 | 0.000364 |
N | 329 | T329T | acG | acT | 2 | 2 | L.3 | 0.007092 |
N | 329 | T329T | acG | acA | 1 | 1 | A.1 | 0.000282 |
N | 329 | T329T | acG | acT | 1 | 1 | AE.8 | 0.000489 |
N | 329 | T329T | acG | acT | 1 | 1 | AY.1 | 0.000396 |
N | 329 | T329T | acG | acT | 1 | 1 | AY.110 | 0.000113 |
N | 329 | T329T | acG | acT | 1 | 1 | AY.120.2.1 | 0.000498 |
N | 329 | T329T | acG | acA | 1 | 1 | AY.23.1 | 0.000417 |
N | 329 | T329T | acG | acT | 1 | 1 | AY.3.1 | 0.000085 |
N | 329 | T329T | acG | acT | 1 | 1 | AY.35 | 0.000233 |
N | 329 | T329T | acG | acA | 1 | 1 | AY.4.3 | 0.000842 |
N | 329 | T329T | acG | acA | 1 | 1 | AY.40 | 0.000964 |
N | 329 | T329T | acG | acT | 1 | 1 | AY.46.2 | 0.000635 |
N | 329 | T329T | acG | acT | 1 | 1 | AY.51 | 0.000909 |
N | 329 | T329T | acG | acA | 1 | 1 | AY.55 | 0.000917 |
N | 329 | T329T | acG | acT | 1 | 1 | AY.56 | 0.001605 |
N | 329 | T329T | acG | acT | 1 | 1 | AY.60 | 0.000938 |
N | 329 | T329T | acG | acT | 1 | 1 | AY.69 | 0.000187 |
N | 329 | T329T | acG | acA | 1 | 1 | AY.83 | 0.001724 |
N | 329 | T329T | acG | acA | 1 | 1 | AY.85 | 0.000427 |
N | 329 | T329T | acG | acT | 1 | 1 | AY.93 | 0.000273 |
N | 329 | T329T | acG | acT | 1 | 1 | AY.94 | 0.000443 |
N | 329 | T329T | acG | acA | 1 | 1 | AY.95 | 0.000761 |
N | 329 | T329T | acG | acT | 1 | 1 | AY.99.2 | 0.000092 |
N | 329 | T329T | acG | acT | 1 | 1 | AZ.2 | 0.000821 |
N | 329 | T329T | acG | acT | 1 | 1 | B.1.1.10 | 0.001115 |
N | 329 | T329T | acG | acT | 1 | 1 | B.1.1.201 | 0.02439 |
N | 329 | T329T | acG | acT | 1 | 1 | B.1.1.207 | 0.001182 |
N | 329 | T329T | acG | acT | 1 | 1 | B.1.1.237 | 0.005405 |
N | 329 | T329T | acG | acT | 1 | 1 | B.1.1.241 | 0.00207 |
N | 329 | T329T | acG | acT | 1 | 1 | B.1.1.251 | 0.007937 |
N | 329 | T329T | acG | acT | 1 | 1 | B.1.1.263 | 0.001558 |
N | 329 | T329T | acG | acT | 1 | 1 | B.1.1.286 | 0.002899 |
N | 329 | T329T | acG | acT | 1 | 1 | B.1.1.304 | 0.002809 |
N | 329 | T329T | acG | acT | 1 | 1 | B.1.1.31 | 0.066667 |
N | 329 | T329T | acG | acT | 1 | 1 | B.1.1.312 | 0.001912 |
N | 329 | T329T | acG | acA | 1 | 1 | B.1.1.337 | 0.003597 |
N | 329 | T329T | acG | acT | 1 | 1 | B.1.1.347 | 0.018182 |
N | 329 | T329T | acG | acT | 1 | 1 | B.1.1.371 | 0.010417 |
N | 329 | T329T | acG | acC | 1 | 1 | B.1.1.377 | 0.001381 |
N | 329 | T329T | acG | acT | 1 | 1 | B.1.1.409 | 0.002833 |
N | 329 | T329T | acG | acA | 1 | 1 | B.1.1.432 | 0.001266 |
N | 329 | T329T | acG | acT | 1 | 1 | B.1.1.512 | 0.028571 |
N | 329 | T329T | acG | acT | 1 | 1 | B.1.1.517 | 0.006803 |
N | 329 | T329T | acG | acT | 1 | 1 | B.1.1.518 | 0.006329 |
N | 329 | T329T | acG | acT | 1 | 1 | B.1.1.526 | 0.003546 |
N | 329 | T329T | acG | acT | 1 | 1 | B.1.1.74 | 0.00431 |
N | 329 | T329T | acG | acT | 1 | 1 | B.1.1.75 | 0.010638 |
N | 329 | T329T | acG | acT | 1 | 1 | B.1.1.8 | 0.003584 |
N | 329 | T329T | acG | acT | 1 | 1 | B.1.1.89 | 0.006061 |
N | 329 | T329T | acG | acA | 1 | 1 | B.1.160.30 | 0.002976 |
N | 329 | T329T | acG | acT | 1 | 1 | B.1.177.15 | 0.000631 |
N | 329 | T329T | acG | acT | 1 | 1 | B.1.177.21 | 0.000076 |
N | 329 | T329T | acG | acT | 1 | 1 | B.1.177.23 | 0.003236 |
N | 329 | T329T | acG | acT | 1 | 1 | B.1.177.69 | 0.001484 |
N | 329 | T329T | acG | acT | 1 | 1 | B.1.177.73 | 0.000566 |
N | 329 | T329T | acG | acC | 1 | 1 | B.1.177.76 | 0.002494 |
N | 329 | T329T | acG | acC | 1 | 1 | B.1.177.77 | 0.000726 |
N | 329 | T329T | acG | acA | 1 | 1 | B.1.177.81 | 0.000189 |
N | 329 | T329T | acG | acA | 1 | 1 | B.1.206 | 0.000816 |
N | 329 | T329T | acG | acA | 1 | 1 | B.1.210 | 0.002132 |
N | 329 | T329T | acG | acT | 1 | 1 | B.1.214.2 | 0.0006 |
N | 329 | T329T | acG | acA | 1 | 1 | B.1.221 | 0.000071 |
N | 329 | T329T | acG | acT | 1 | 1 | B.1.236 | 0.002053 |
N | 329 | T329T | acG | acT | 1 | 1 | B.1.251 | 0.021739 |
N | 329 | T329T | acG | acT | 1 | 1 | B.1.258.17 | 0.000104 |
N | 329 | T329T | acG | acA | 1 | 1 | B.1.258.4 | 0.003448 |
N | 329 | T329T | acG | acT | 1 | 1 | B.1.284 | 0.013158 |
N | 329 | T329T | acG | acT | 1 | 1 | B.1.298 | 0.002114 |
N | 329 | T329T | acG | acT | 1 | 1 | B.1.315 | 0.006061 |
N | 329 | T329T | acG | acT | 1 | 1 | B.1.351.2 | 0.000303 |
N | 329 | T329T | acG | acA | 1 | 1 | B.1.36.1 | 0.00114 |
N | 329 | T329T | acG | acT | 1 | 1 | B.1.36.16 | 0.001425 |
N | 329 | T329T | acG | acA | 1 | 1 | B.1.36.31 | 0.001751 |
N | 329 | T329T | acG | acT | 1 | 1 | B.1.36.36 | 0.000602 |
N | 329 | T329T | acG | acA | 1 | 1 | B.1.361 | 0.001289 |
N | 329 | T329T | acG | acT | 1 | 1 | B.1.362 | 0.001541 |
N | 329 | T329T | acG | acT | 1 | 1 | B.1.367 | 0.000792 |
N | 329 | T329T | acG | acT | 1 | 1 | B.1.375 | 0.00082 |
N | 329 | T329T | acG | acT | 1 | 1 | B.1.451 | 0.008197 |
N | 329 | T329T | acG | acT | 1 | 1 | B.1.462 | 0.007246 |
N | 329 | T329T | acG | acT | 1 | 1 | B.1.467 | 0.04 |
N | 329 | T329T | acG | acC | 1 | 1 | B.1.470 | 0.001404 |
N | 329 | T329T | acG | acT | 1 | 1 | B.1.510 | 0.026316 |
N | 329 | T329T | acG | acT | 1 | 1 | B.1.517 | 0.000427 |
N | 329 | T329T | acG | acT | 1 | 1 | B.1.533 | 0.009615 |
N | 329 | T329T | acG | acT | 1 | 1 | B.1.547 | 0.02439 |
N | 329 | T329T | acG | acT | 1 | 1 | B.1.561 | 0.000397 |
N | 329 | T329T | acG | acT | 1 | 1 | B.1.564 | 0.000426 |
N | 329 | T329T | acG | acT | 1 | 1 | B.1.573 | 0.006098 |
N | 329 | T329T | acG | acT | 1 | 1 | B.1.597 | 0.00463 |
N | 329 | T329T | acG | acT | 1 | 1 | B.1.609 | 0.000479 |
N | 329 | T329T | acG | acT | 1 | 1 | B.1.621.1 | 0.000506 |
N | 329 | T329T | acG | acT | 1 | 1 | B.1.628 | 0.000352 |
N | 329 | T329T | acG | acT | 1 | 1 | B.1.9.4 | 0.006135 |
N | 329 | T329T | acG | acT | 1 | 1 | B.1.9.5 | 0.005682 |
N | 329 | T329T | acG | acA | 1 | 1 | B.1.93 | 0.000934 |
N | 329 | T329T | acG | acA | 1 | 1 | B.3 | 0.000831 |
N | 329 | T329T | acG | acT | 1 | 1 | B.4 | 0.002208 |
N | 329 | T329T | acG | acA | 1 | 1 | B.4.8 | 0.071429 |
N | 329 | T329T | acG | acC | 1 | 1 | B.6.1 | 0.026316 |
N | 329 | T329T | acG | acA | 1 | 1 | B.6.6 | 0.000889 |
N | 329 | T329T | acG | acC | 1 | 1 | C.1 | 0.002392 |
N | 329 | T329T | acG | acT | 1 | 1 | C.36.3 | 0.000567 |
N | 329 | T329T | acG | acT | 1 | 1 | N.5 | 0.001767 |
N | 329 | T329T | acG | acT | 1 | 1 | P.1.15 | 0.000232 |
N | 329 | T329T | acG | acT | 1 | 1 | P.3 | 0.001595 |
N | 329 | T329T | acG | acT | 1 | 1 | W.3 | 0.005263 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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