CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
N | 282 | T282I | nonsyn | aCc | aTc | 1094 | 1094 | 1 | 29117-29119 |
Details of the mutation T282I within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
N | 282 | T282I | aCc | aTc | 1094 | 1094 | All | 0.000209 |
N | 282 | T282I | aCc | aTc | 193 | 193 | AY.4 | 0.0003 |
N | 282 | T282I | aCc | aTc | 190 | 190 | B.1.1.7 | 0.00017 |
N | 282 | T282I | aCc | aTc | 67 | 67 | AY.29 | 0.001057 |
N | 282 | T282I | aCc | aTc | 54 | 54 | AY.44 | 0.000329 |
N | 282 | T282I | aCc | aTc | 44 | 44 | AY.103 | 0.000273 |
N | 282 | T282I | aCc | aTc | 44 | 44 | AY.25 | 0.000265 |
N | 282 | T282I | aCc | aTc | 39 | 39 | B.1.429 | 0.000918 |
N | 282 | T282I | aCc | aTc | 35 | 35 | B.1.617.2 | 0.000132 |
N | 282 | T282I | aCc | aTc | 26 | 26 | B.1.1.519 | 0.001032 |
N | 282 | T282I | aCc | aTc | 25 | 25 | AY.33 | 0.001669 |
N | 282 | T282I | aCc | aTc | 23 | 23 | B.1.258 | 0.001531 |
N | 282 | T282I | aCc | aTc | 22 | 22 | P.1 | 0.000347 |
N | 282 | T282I | aCc | aTc | 20 | 20 | B.1.2 | 0.000176 |
N | 282 | T282I | aCc | aTc | 16 | 16 | AY.120 | 0.000595 |
N | 282 | T282I | aCc | aTc | 16 | 16 | AY.43 | 0.000071 |
N | 282 | T282I | aCc | aTc | 15 | 15 | AY.4.5 | 0.001612 |
N | 282 | T282I | aCc | aTc | 11 | 11 | AY.26 | 0.000311 |
N | 282 | T282I | aCc | aTc | 11 | 11 | AY.46 | 0.001145 |
N | 282 | T282I | aCc | aTc | 11 | 11 | B.1 | 0.000101 |
N | 282 | T282I | aCc | aTc | 11 | 11 | B.1.177 | 0.000145 |
N | 282 | T282I | aCc | aTc | 11 | 11 | C.36 | 0.010018 |
N | 282 | T282I | aCc | aTc | 9 | 9 | B.1.1 | 0.000163 |
N | 282 | T282I | aCc | aTc | 8 | 8 | AY.111 | 0.001465 |
N | 282 | T282I | aCc | aTc | 8 | 8 | AY.119 | 0.000282 |
N | 282 | T282I | aCc | aTc | 8 | 8 | AY.3 | 0.00008 |
N | 282 | T282I | aCc | aTc | 8 | 8 | AY.7.1 | 0.000902 |
N | 282 | T282I | aCc | aTc | 8 | 8 | B.1.428 | 0.008163 |
N | 282 | T282I | aCc | aTc | 7 | 7 | AY.102 | 0.000186 |
N | 282 | T282I | aCc | aTc | 7 | 7 | AY.16.1 | 0.003289 |
N | 282 | T282I | aCc | aTc | 7 | 7 | AY.20 | 0.000272 |
N | 282 | T282I | aCc | aTc | 6 | 6 | D.2 | 0.00045 |
N | 282 | T282I | aCc | aTc | 5 | 5 | AY.30 | 0.001979 |
N | 282 | T282I | aCc | aTc | 5 | 5 | B.1.177.52 | 0.008787 |
N | 282 | T282I | aCc | aTc | 5 | 5 | B.1.36 | 0.00073 |
N | 282 | T282I | aCc | aTc | 4 | 4 | AY.29.1 | 0.000882 |
N | 282 | T282I | aCc | aTc | 4 | 4 | B.1.1.37 | 0.000771 |
N | 282 | T282I | aCc | aTc | 4 | 4 | B.1.160 | 0.000125 |
N | 282 | T282I | aCc | aTc | 3 | 3 | AY.116 | 0.00086 |
N | 282 | T282I | aCc | aTc | 3 | 3 | AY.39 | 0.000074 |
N | 282 | T282I | aCc | aTc | 3 | 3 | AY.4.2 | 0.000065 |
N | 282 | T282I | aCc | aTc | 3 | 3 | AY.4.2.1 | 0.000447 |
N | 282 | T282I | aCc | aTc | 3 | 3 | AY.5 | 0.000062 |
N | 282 | T282I | aCc | aTc | 3 | 3 | B.1.1.318 | 0.000905 |
N | 282 | T282I | aCc | aTc | 3 | 3 | B.1.234 | 0.000396 |
N | 282 | T282I | aCc | aTc | 3 | 3 | B.1.362 | 0.004622 |
N | 282 | T282I | aCc | aTc | 3 | 3 | B.1.438.1 | 0.000322 |
N | 282 | T282I | aCc | aTc | 3 | 3 | B.1.499 | 0.003151 |
N | 282 | T282I | aCc | aTc | 3 | 3 | B.1.621 | 0.000266 |
N | 282 | T282I | aCc | aTc | 2 | 2 | AY.117 | 0.000169 |
N | 282 | T282I | aCc | aTc | 2 | 2 | AY.23 | 0.000139 |
N | 282 | T282I | aCc | aTc | 2 | 2 | AY.27 | 0.000129 |
N | 282 | T282I | aCc | aTc | 2 | 2 | B.1.1.317 | 0.000823 |
N | 282 | T282I | aCc | aTc | 2 | 2 | B.1.1.63 | 0.000772 |
N | 282 | T282I | aCc | aTc | 2 | 2 | B.1.177.42 | 0.001789 |
N | 282 | T282I | aCc | aTc | 2 | 2 | B.1.240 | 0.000431 |
N | 282 | T282I | aCc | aTc | 2 | 2 | B.1.243 | 0.000139 |
N | 282 | T282I | aCc | aTc | 2 | 2 | B.1.258.17 | 0.000208 |
N | 282 | T282I | aCc | aTc | 2 | 2 | B.1.617.1 | 0.000258 |
N | 282 | T282I | aCc | aTc | 1 | 1 | A.29 | 0.005319 |
N | 282 | T282I | aCc | aTc | 1 | 1 | AY.100 | 0.000046 |
N | 282 | T282I | aCc | aTc | 1 | 1 | AY.109 | 0.00074 |
N | 282 | T282I | aCc | aTc | 1 | 1 | AY.113 | 0.000142 |
N | 282 | T282I | aCc | aTc | 1 | 1 | AY.118 | 0.000063 |
N | 282 | T282I | aCc | aTc | 1 | 1 | AY.120.2.1 | 0.000498 |
N | 282 | T282I | aCc | aTc | 1 | 1 | AY.13 | 0.000161 |
N | 282 | T282I | aCc | aTc | 1 | 1 | AY.14 | 0.000088 |
N | 282 | T282I | aCc | aTc | 1 | 1 | AY.3.1 | 0.000085 |
N | 282 | T282I | aCc | aTc | 1 | 1 | AY.34 | 0.000097 |
N | 282 | T282I | aCc | aTc | 1 | 1 | AY.34.1 | 0.00051 |
N | 282 | T282I | aCc | aTc | 1 | 1 | AY.36 | 0.000148 |
N | 282 | T282I | aCc | aTc | 1 | 1 | AY.38 | 0.000499 |
N | 282 | T282I | aCc | aTc | 1 | 1 | AY.40 | 0.000964 |
N | 282 | T282I | aCc | aTc | 1 | 1 | AY.42 | 0.00004 |
N | 282 | T282I | aCc | aTc | 1 | 1 | AY.45 | 0.000122 |
N | 282 | T282I | aCc | aTc | 1 | 1 | AY.46.2 | 0.000635 |
N | 282 | T282I | aCc | aTc | 1 | 1 | AY.46.4 | 0.000165 |
N | 282 | T282I | aCc | aTc | 1 | 1 | AY.47 | 0.000031 |
N | 282 | T282I | aCc | aTc | 1 | 1 | AY.53 | 0.000288 |
N | 282 | T282I | aCc | aTc | 1 | 1 | AY.6 | 0.000041 |
N | 282 | T282I | aCc | aTc | 1 | 1 | AY.67 | 0.000464 |
N | 282 | T282I | aCc | aTc | 1 | 1 | AY.84 | 0.000437 |
N | 282 | T282I | aCc | aTc | 1 | 1 | AY.9 | 0.000068 |
N | 282 | T282I | aCc | aTc | 1 | 1 | AY.98 | 0.000079 |
N | 282 | T282I | aCc | aTc | 1 | 1 | AY.98.1 | 0.000048 |
N | 282 | T282I | aCc | aTc | 1 | 1 | B.1.1.1 | 0.000327 |
N | 282 | T282I | aCc | aTc | 1 | 1 | B.1.1.10 | 0.001115 |
N | 282 | T282I | aCc | aTc | 1 | 1 | B.1.1.101 | 0.01 |
N | 282 | T282I | aCc | aTc | 1 | 1 | B.1.1.216 | 0.00089 |
N | 282 | T282I | aCc | aTc | 1 | 1 | B.1.1.354 | 0.004386 |
N | 282 | T282I | aCc | aTc | 1 | 1 | B.1.1.71 | 0.006061 |
N | 282 | T282I | aCc | aTc | 1 | 1 | B.1.177.21 | 0.000076 |
N | 282 | T282I | aCc | aTc | 1 | 1 | B.1.177.53 | 0.002392 |
N | 282 | T282I | aCc | aTc | 1 | 1 | B.1.177.57 | 0.000281 |
N | 282 | T282I | aCc | aTc | 1 | 1 | B.1.177.58 | 0.001332 |
N | 282 | T282I | aCc | aTc | 1 | 1 | B.1.201 | 0.005682 |
N | 282 | T282I | aCc | aTc | 1 | 1 | B.1.232 | 0.000537 |
N | 282 | T282I | aCc | aTc | 1 | 1 | B.1.351 | 0.00003 |
N | 282 | T282I | aCc | aTc | 1 | 1 | B.1.36.29 | 0.000517 |
N | 282 | T282I | aCc | aTc | 1 | 1 | B.1.383 | 0.009009 |
N | 282 | T282I | aCc | aTc | 1 | 1 | B.1.466.2 | 0.000391 |
N | 282 | T282I | aCc | aTc | 1 | 1 | B.1.509 | 0.000866 |
N | 282 | T282I | aCc | aTc | 1 | 1 | B.1.526 | 0.000024 |
N | 282 | T282I | aCc | aTc | 1 | 1 | B.1.537 | 0.02 |
N | 282 | T282I | aCc | aTc | 1 | 1 | B.1.561 | 0.000397 |
N | 282 | T282I | aCc | aTc | 1 | 1 | B.1.588 | 0.00091 |
N | 282 | T282I | aCc | aTc | 1 | 1 | B.1.596 | 0.000087 |
N | 282 | T282I | aCc | aTc | 1 | 1 | B.1.620 | 0.000946 |
N | 282 | T282I | aCc | aTc | 1 | 1 | B.1.9.4 | 0.006135 |
N | 282 | T282I | aCc | aTc | 1 | 1 | B.40 | 0.000364 |
N | 282 | T282I | aCc | aTc | 1 | 1 | B.6 | 0.00091 |
N | 282 | T282I | aCc | aTc | 1 | 1 | C.37 | 0.000116 |
N | 282 | T282I | aCc | aTc | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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