CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : Mut = T24S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N24T24SnonsynaCtaGt33180.54545528343-28345
N24T24SnonsynActTct33140.42424228343-28345
N24T24SnonsynAcTTcA3310.03030328343-28345

Details of the mutation T24S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N24T24SaCtaGt1833All0.000003
N24T24SActTct1433All0.000003
N24T24SAcTTcA133All0
N24T24SaCtaGt56AY.440.00003
N24T24SActTct16AY.440.000006
N24T24SActTct44B.1.5260.000094
N24T24SaCtaGt33B.1.617.20.000011
N24T24SaCtaGt22AY.1020.000053
N24T24SaCtaGt22AY.30.00002
N24T24SaCtaGt12AY.420.00004
N24T24SActTct12AY.420.00004
N24T24SaCtaGt22AY.46.40.000329
N24T24SActTct22B.10.000018
N24T24SActTct11AY.1030.000006
N24T24SActTct11AY.1130.000142
N24T24SaCtaGt11AY.130.000161
N24T24SActTct11AY.430.000004
N24T24SActTct11AY.9.10.000084
N24T24SaCtaGt11B.1.1770.000013
N24T24SAcTTcA11B.1.177.630.002703
N24T24SActTct11B.1.177.70.000165
N24T24SaCtaGt11B.1.20.000009
N24T24SActTct11B.1.5900.004545

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.