CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
N | 205 | T205I | nonsyn | aCt | aTt | 167093 | 165671 | 0.99149 | 28886-28888 | |
N | 205 | T205I | nonsyn | aCT | aTC | 167093 | 1422 | 0.00851023 | 28886-28888 |
Details of the mutation T205I within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
N | 205 | T205I | aCt | aTt | 165671 | 167093 | All | 0.031687 |
N | 205 | T205I | aCT | aTC | 1422 | 167093 | All | 0.000272 |
N | 205 | T205I | aCt | aTt | 41962 | 41983 | B.1.429 | 0.987318 |
N | 205 | T205I | aCT | aTC | 21 | 41983 | B.1.429 | 0.000494 |
N | 205 | T205I | aCt | aTt | 31355 | 32588 | B.1.351 | 0.932075 |
N | 205 | T205I | aCT | aTC | 1233 | 32588 | B.1.351 | 0.036653 |
N | 205 | T205I | aCt | aTt | 19615 | 19616 | B.1.427 | 0.990506 |
N | 205 | T205I | aCT | aTC | 1 | 19616 | B.1.427 | 0.00005 |
N | 205 | T205I | aCt | aTt | 13570 | 13570 | B.1.637 | 0.991597 |
N | 205 | T205I | aCt | aTt | 10969 | 10969 | B.1.621 | 0.970966 |
N | 205 | T205I | aCt | aTt | 8171 | 8174 | B.1.525 | 0.924635 |
N | 205 | T205I | aCT | aTC | 3 | 8174 | B.1.525 | 0.000339 |
N | 205 | T205I | aCt | aTt | 5401 | 5489 | B.1 | 0.049471 |
N | 205 | T205I | aCT | aTC | 88 | 5489 | B.1 | 0.000806 |
N | 205 | T205I | aCt | aTt | 3287 | 3290 | B.1.351.2 | 0.994554 |
N | 205 | T205I | aCT | aTC | 3 | 3290 | B.1.351.2 | 0.000908 |
N | 205 | T205I | aCt | aTt | 3251 | 3251 | B.1.575 | 0.986347 |
N | 205 | T205I | aCt | aTt | 2515 | 2519 | B.1.466.2 | 0.983959 |
N | 205 | T205I | aCT | aTC | 4 | 2519 | B.1.466.2 | 0.001565 |
N | 205 | T205I | aCt | aTt | 1964 | 1964 | B.1.621.1 | 0.993424 |
N | 205 | T205I | aCt | aTt | 1634 | 1634 | B.1.351.5 | 0.979616 |
N | 205 | T205I | aCt | aTt | 1578 | 1579 | B.1.214.2 | 0.946043 |
N | 205 | T205I | aCT | aTC | 1 | 1579 | B.1.214.2 | 0.0006 |
N | 205 | T205I | aCt | aTt | 1559 | 1559 | B.1.619.1 | 1 |
N | 205 | T205I | aCt | aTt | 1130 | 1130 | B.1.351.3 | 0.990359 |
N | 205 | T205I | aCt | aTt | 1113 | 1114 | B.1.619 | 0.969512 |
N | 205 | T205I | aCT | aTC | 1 | 1114 | B.1.619 | 0.000871 |
N | 205 | T205I | aCt | aTt | 937 | 937 | B.1.375 | 0.768033 |
N | 205 | T205I | aCt | aTt | 803 | 803 | B.1.595 | 0.209551 |
N | 205 | T205I | aCt | aTt | 787 | 787 | AU.1 | 0.996203 |
N | 205 | T205I | aCt | aTt | 763 | 763 | B.1.346 | 1 |
N | 205 | T205I | aCt | aTt | 614 | 614 | B.1.428 | 0.626531 |
N | 205 | T205I | aCt | aTt | 566 | 566 | B.1.243 | 0.039385 |
N | 205 | T205I | aCt | aTt | 513 | 513 | B.1.474 | 0.975285 |
N | 205 | T205I | aCt | aTt | 508 | 511 | B.1.399 | 0.982592 |
N | 205 | T205I | aCT | aTC | 3 | 511 | B.1.399 | 0.005803 |
N | 205 | T205I | aCt | aTt | 489 | 489 | B.1.470 | 0.686798 |
N | 205 | T205I | aCt | aTt | 475 | 483 | B.1.1.7 | 0.000425 |
N | 205 | T205I | aCT | aTC | 8 | 483 | B.1.1.7 | 0.000007 |
N | 205 | T205I | aCt | aTt | 471 | 471 | AU.3 | 0.993671 |
N | 205 | T205I | aCt | aTt | 443 | 443 | B.1.111 | 0.520564 |
N | 205 | T205I | aCt | aTt | 410 | 410 | AU.2 | 0.992736 |
N | 205 | T205I | aCt | aTt | 409 | 409 | B.1.575.1 | 0.997561 |
N | 205 | T205I | aCt | aTt | 389 | 389 | B.1.1.269 | 0.526387 |
N | 205 | T205I | aCt | aTt | 377 | 377 | B.1.2 | 0.00332 |
N | 205 | T205I | aCt | aTt | 352 | 352 | AY.4 | 0.000548 |
N | 205 | T205I | aCt | aTt | 321 | 321 | AY.25 | 0.001931 |
N | 205 | T205I | aCt | aTt | 298 | 298 | B.1.433 | 0.952077 |
N | 205 | T205I | aCt | aTt | 227 | 227 | B.1.411 | 0.840741 |
N | 205 | T205I | aCt | aTt | 208 | 208 | B.1.575.2 | 1 |
N | 205 | T205I | aCt | aTt | 198 | 200 | B.1.617.2 | 0.000746 |
N | 205 | T205I | aCT | aTC | 2 | 200 | B.1.617.2 | 0.000008 |
N | 205 | T205I | aCt | aTt | 184 | 184 | B.1.630 | 0.963351 |
N | 205 | T205I | aCt | aTt | 169 | 169 | B.1.503 | 0.420398 |
N | 205 | T205I | aCt | aTt | 169 | 169 | B.1.626 | 0.965714 |
N | 205 | T205I | aCt | aTt | 168 | 168 | B.1.526 | 0.003949 |
N | 205 | T205I | aCt | aTt | 167 | 167 | AY.3 | 0.001661 |
N | 205 | T205I | aCt | aTt | 161 | 161 | B.1.605 | 0.958333 |
N | 205 | T205I | aCt | aTt | 140 | 140 | B.1.214.3 | 1 |
N | 205 | T205I | aCt | aTt | 138 | 138 | P.1 | 0.002174 |
N | 205 | T205I | aCt | aTt | 137 | 137 | B.1.466.1 | 0.985612 |
N | 205 | T205I | aCt | aTt | 133 | 133 | B.1.453 | 0.430421 |
N | 205 | T205I | aCt | aTt | 132 | 132 | AY.44 | 0.000803 |
N | 205 | T205I | aCt | aTt | 129 | 129 | B.1.415.1 | 0.977273 |
N | 205 | T205I | aCt | aTt | 110 | 110 | B.1.214.4 | 1 |
N | 205 | T205I | aCt | aTt | 107 | 107 | B.1.1.261 | 0.922414 |
N | 205 | T205I | aCt | aTt | 107 | 107 | B.1.131 | 0.938596 |
N | 205 | T205I | aCt | aTt | 101 | 101 | AY.47 | 0.003142 |
N | 205 | T205I | aCt | aTt | 98 | 98 | B.1.280 | 0.7 |
N | 205 | T205I | aCt | aTt | 95 | 95 | B.1.530 | 0.678571 |
N | 205 | T205I | aCt | aTt | 94 | 94 | B.1.591 | 1 |
N | 205 | T205I | aCt | aTt | 93 | 93 | B.35 | 0.726562 |
N | 205 | T205I | aCt | aTt | 89 | 89 | B | 0.011375 |
N | 205 | T205I | aCt | aTt | 86 | 86 | AY.26 | 0.002435 |
N | 205 | T205I | aCt | aTt | 84 | 84 | B.1.1.519 | 0.003336 |
N | 205 | T205I | aCt | aTt | 77 | 77 | B.1.428.3 | 0.987179 |
N | 205 | T205I | aCt | aTt | 75 | 75 | B.1.258 | 0.004991 |
N | 205 | T205I | aCt | aTt | 71 | 71 | AY.43 | 0.000315 |
N | 205 | T205I | aCt | aTt | 71 | 71 | B.1.459 | 0.289796 |
N | 205 | T205I | aCt | aTt | 70 | 70 | B.1.623 | 0.037554 |
N | 205 | T205I | aCt | aTt | 65 | 65 | B.1.1.526 | 0.230496 |
N | 205 | T205I | aCt | aTt | 63 | 63 | B.1.429.1 | 0.759036 |
N | 205 | T205I | aCt | aTt | 62 | 62 | B.1.1 | 0.001125 |
N | 205 | T205I | aCt | aTt | 55 | 55 | AY.98.1 | 0.002664 |
N | 205 | T205I | aCt | aTt | 54 | 54 | AD.2 | 0.011824 |
N | 205 | T205I | aCt | aTt | 53 | 53 | B.1.258.17 | 0.005511 |
N | 205 | T205I | aCt | aTt | 53 | 53 | B.1.596.1 | 0.495327 |
N | 205 | T205I | aCt | aTt | 52 | 52 | B.1.210 | 0.110874 |
N | 205 | T205I | aCt | aTt | 50 | 50 | B.1.596 | 0.004357 |
N | 205 | T205I | aCt | aTt | 44 | 49 | B.1.214.1 | 0.88 |
N | 205 | T205I | aCT | aTC | 5 | 49 | B.1.214.1 | 0.1 |
N | 205 | T205I | aCt | aTt | 49 | 49 | B.1.221 | 0.003481 |
N | 205 | T205I | aCt | aTt | 49 | 49 | B.1.609 | 0.02349 |
N | 205 | T205I | aCt | aTt | 44 | 44 | B.1.311 | 0.012081 |
N | 205 | T205I | aCt | aTt | 42 | 42 | AY.103 | 0.000261 |
N | 205 | T205I | aCt | aTt | 42 | 42 | B.1.160 | 0.00131 |
N | 205 | T205I | aCt | aTt | 42 | 42 | B.1.36.29 | 0.021728 |
N | 205 | T205I | aCt | aTt | 41 | 41 | B.1.349 | 0.029307 |
N | 205 | T205I | aCt | aTt | 38 | 40 | AY.75 | 0.002129 |
N | 205 | T205I | aCT | aTC | 2 | 40 | AY.75 | 0.000112 |
N | 205 | T205I | aCt | aTt | 38 | 38 | B.1.380 | 0.251656 |
N | 205 | T205I | aCt | aTt | 35 | 36 | B.1.177.73 | 0.019819 |
N | 205 | T205I | aCT | aTC | 1 | 36 | B.1.177.73 | 0.000566 |
N | 205 | T205I | aCt | aTt | 36 | 36 | B.1.466 | 0.837209 |
N | 205 | T205I | aCt | aTt | 28 | 36 | B.1.524 | 0.039381 |
N | 205 | T205I | aCT | aTC | 8 | 36 | B.1.524 | 0.011252 |
N | 205 | T205I | aCt | aTt | 33 | 33 | B.1.239 | 0.040293 |
N | 205 | T205I | aCt | aTt | 33 | 33 | B.1.367 | 0.026149 |
N | 205 | T205I | aCt | aTt | 32 | 32 | AY.106 | 0.010717 |
N | 205 | T205I | aCt | aTt | 31 | 31 | AY.39 | 0.000766 |
N | 205 | T205I | aCt | aTt | 30 | 30 | B.1.177 | 0.000395 |
N | 205 | T205I | aCt | aTt | 29 | 29 | B.1.428.1 | 1 |
N | 205 | T205I | aCt | aTt | 29 | 29 | B.1.428.2 | 0.966667 |
N | 205 | T205I | aCt | aTt | 28 | 28 | AY.27 | 0.001812 |
N | 205 | T205I | aCt | aTt | 28 | 28 | N.5 | 0.04947 |
N | 205 | T205I | aCt | aTt | 26 | 26 | AY.4.2.1 | 0.003874 |
N | 205 | T205I | aCt | aTt | 26 | 26 | B.1.351.1 | 1 |
N | 205 | T205I | aCt | aTt | 26 | 26 | B.1.509 | 0.022511 |
N | 205 | T205I | aCt | aTt | 25 | 25 | AY.54 | 0.002384 |
N | 205 | T205I | aCt | aTt | 25 | 25 | B.1.366 | 0.121951 |
N | 205 | T205I | aCt | aTt | 25 | 25 | B.1.576 | 0.022665 |
N | 205 | T205I | aCt | aTt | 24 | 24 | B.1.471 | 0.065574 |
N | 205 | T205I | aCt | aTt | 23 | 23 | A.1 | 0.006483 |
N | 205 | T205I | aCt | aTt | 23 | 23 | B.1.462 | 0.166667 |
N | 205 | T205I | aCt | aTt | 22 | 22 | AY.119 | 0.000777 |
N | 205 | T205I | aCt | aTt | 22 | 22 | B.1.177.7 | 0.003627 |
N | 205 | T205I | aCt | aTt | 21 | 21 | AY.4.2 | 0.000455 |
N | 205 | T205I | aCt | aTt | 21 | 21 | AY.5 | 0.000434 |
N | 205 | T205I | aCt | aTt | 20 | 20 | B.1.633 | 0.833333 |
N | 205 | T205I | aCt | aTt | 19 | 19 | AY.13 | 0.003059 |
N | 205 | T205I | aCt | aTt | 19 | 19 | AY.98 | 0.001501 |
N | 205 | T205I | aCt | aTt | 19 | 19 | B.40 | 0.006922 |
N | 205 | T205I | aCt | aTt | 18 | 18 | AY.102 | 0.000477 |
N | 205 | T205I | aCt | aTt | 18 | 18 | B.1.396 | 0.012703 |
N | 205 | T205I | aCt | aTt | 18 | 18 | P.1.10 | 0.00485 |
N | 205 | T205I | aCt | aTt | 17 | 17 | B.1.469 | 0.061372 |
N | 205 | T205I | aCt | aTt | 17 | 17 | B.1.618 | 0.068548 |
N | 205 | T205I | aCt | aTt | 16 | 16 | A | 0.006192 |
N | 205 | T205I | aCt | aTt | 16 | 16 | AY.20 | 0.000622 |
N | 205 | T205I | aCt | aTt | 16 | 16 | B.1.1.214 | 0.000887 |
N | 205 | T205I | aCt | aTt | 15 | 15 | B.1.336 | 0.036585 |
N | 205 | T205I | aCt | aTt | 15 | 15 | B.1.620 | 0.014191 |
N | 205 | T205I | aCt | aTt | 14 | 14 | AY.120 | 0.000521 |
N | 205 | T205I | aCt | aTt | 13 | 13 | AY.70 | 0.002711 |
N | 205 | T205I | aCt | aTt | 13 | 13 | AY.9.2 | 0.000477 |
N | 205 | T205I | aCt | aTt | 13 | 13 | B.1.1.416 | 0.011765 |
N | 205 | T205I | aCt | aTt | 13 | 13 | B.3 | 0.010797 |
N | 205 | T205I | aCt | aTt | 12 | 12 | AY.23 | 0.000837 |
N | 205 | T205I | aCt | aTt | 12 | 12 | AY.61 | 0.001257 |
N | 205 | T205I | aCt | aTt | 12 | 12 | B.1.206 | 0.009788 |
N | 205 | T205I | aCt | aTt | 11 | 11 | AY.29 | 0.000174 |
N | 205 | T205I | aCt | aTt | 11 | 11 | B.1.1.284 | 0.001181 |
N | 205 | T205I | aCt | aTt | 11 | 11 | B.1.214 | 0.040293 |
N | 205 | T205I | aCt | aTt | 11 | 11 | B.1.320 | 0.013699 |
N | 205 | T205I | aCT | aTC | 8 | 11 | C.16 | 0.008484 |
N | 205 | T205I | aCt | aTt | 3 | 11 | C.16 | 0.003181 |
N | 205 | T205I | aCt | aTt | 10 | 10 | AY.3.1 | 0.000853 |
N | 205 | T205I | aCt | aTt | 10 | 10 | AY.33 | 0.000668 |
N | 205 | T205I | aCt | aTt | 10 | 10 | AY.42 | 0.000402 |
N | 205 | T205I | aCt | aTt | 10 | 10 | AY.46.4 | 0.001645 |
N | 205 | T205I | aCt | aTt | 10 | 10 | B.1.1.189 | 0.015129 |
N | 205 | T205I | aCt | aTt | 10 | 10 | B.1.1.28 | 0.003112 |
N | 205 | T205I | aCt | aTt | 10 | 10 | B.1.1.304 | 0.02809 |
N | 205 | T205I | aCt | aTt | 10 | 10 | B.1.157 | 0.029851 |
N | 205 | T205I | aCt | aTt | 10 | 10 | B.1.342 | 1 |
N | 205 | T205I | aCt | aTt | 9 | 9 | A.21 | 0.024931 |
N | 205 | T205I | aCt | aTt | 6 | 9 | AY.45 | 0.00073 |
N | 205 | T205I | aCT | aTC | 3 | 9 | AY.45 | 0.000365 |
N | 205 | T205I | aCt | aTt | 9 | 9 | AY.56 | 0.014446 |
N | 205 | T205I | aCt | aTt | 9 | 9 | B.1.1.56 | 0.160714 |
N | 205 | T205I | aCt | aTt | 9 | 9 | B.1.36 | 0.001313 |
N | 205 | T205I | aCt | aTt | 9 | 9 | B.1.361 | 0.011598 |
N | 205 | T205I | aCt | aTt | 8 | 8 | AY.116 | 0.002294 |
N | 205 | T205I | aCt | aTt | 8 | 8 | AY.30 | 0.003166 |
N | 205 | T205I | aCT | aTC | 7 | 8 | B.1.1.375 | 0.083333 |
N | 205 | T205I | aCt | aTt | 1 | 8 | B.1.1.375 | 0.011905 |
N | 205 | T205I | aCt | aTt | 8 | 8 | B.1.1.70 | 0.002729 |
N | 205 | T205I | aCt | aTt | 8 | 8 | B.1.112 | 0.041451 |
N | 205 | T205I | aCt | aTt | 8 | 8 | B.1.170 | 0.034483 |
N | 205 | T205I | aCt | aTt | 8 | 8 | B.1.234 | 0.001056 |
N | 205 | T205I | aCt | aTt | 8 | 8 | B.1.540 | 0.07767 |
N | 205 | T205I | aCt | aTt | 8 | 8 | B.1.561 | 0.003176 |
N | 205 | T205I | aCt | aTt | 8 | 8 | B.6 | 0.007279 |
N | 205 | T205I | aCT | aTC | 7 | 8 | C.36 | 0.006375 |
N | 205 | T205I | aCt | aTt | 1 | 8 | C.36 | 0.000911 |
N | 205 | T205I | aCt | aTt | 8 | 8 | P.1.12 | 0.003872 |
N | 205 | T205I | aCt | aTt | 8 | 8 | P.1.4 | 0.007812 |
N | 205 | T205I | aCt | aTt | 7 | 7 | A.2.5 | 0.003493 |
N | 205 | T205I | aCt | aTt | 7 | 7 | AY.117 | 0.000592 |
N | 205 | T205I | aCt | aTt | 7 | 7 | AY.118 | 0.000439 |
N | 205 | T205I | aCt | aTt | 6 | 7 | B.1.1.318 | 0.001811 |
N | 205 | T205I | aCT | aTC | 1 | 7 | B.1.1.318 | 0.000302 |
N | 205 | T205I | aCt | aTt | 7 | 7 | B.1.324 | 0.011236 |
N | 205 | T205I | aCt | aTt | 7 | 7 | B.1.636 | 0.04698 |
N | 205 | T205I | aCt | aTt | 6 | 6 | AY.100 | 0.000276 |
N | 205 | T205I | aCt | aTt | 6 | 6 | B.1.1.216 | 0.005343 |
N | 205 | T205I | aCt | aTt | 6 | 6 | B.1.1.335 | 0.077922 |
N | 205 | T205I | aCt | aTt | 6 | 6 | B.1.400 | 0.002574 |
N | 205 | T205I | aCt | aTt | 6 | 6 | B.1.527 | 0.022222 |
N | 205 | T205I | aCt | aTt | 6 | 6 | B.1.580 | 0.02439 |
N | 205 | T205I | aCt | aTt | 6 | 6 | B.1.9 | 0.037037 |
N | 205 | T205I | aCt | aTt | 6 | 6 | D.2 | 0.00045 |
N | 205 | T205I | aCt | aTt | 6 | 6 | P.1.17 | 0.000971 |
N | 205 | T205I | aCt | aTt | 5 | 5 | A.24 | 0.357143 |
N | 205 | T205I | aCt | aTt | 5 | 5 | AY.14 | 0.00044 |
N | 205 | T205I | aCt | aTt | 5 | 5 | AY.6 | 0.000206 |
N | 205 | T205I | aCt | aTt | 5 | 5 | AY.62 | 0.002179 |
N | 205 | T205I | aCt | aTt | 5 | 5 | AY.74 | 0.000578 |
N | 205 | T205I | aCt | aTt | 5 | 5 | AY.99.2 | 0.000461 |
N | 205 | T205I | aCt | aTt | 5 | 5 | B.1.1.192 | 0.011547 |
N | 205 | T205I | aCt | aTt | 5 | 5 | B.1.258.3 | 0.008375 |
N | 205 | T205I | aCt | aTt | 5 | 5 | B.1.260 | 0.016722 |
N | 205 | T205I | aCt | aTt | 5 | 5 | B.1.468 | 0.028571 |
N | 205 | T205I | aCt | aTt | 5 | 5 | B.1.497 | 0.001574 |
N | 205 | T205I | aCt | aTt | 5 | 5 | B.1.577 | 0.003436 |
N | 205 | T205I | aCt | aTt | 5 | 5 | B.1.628 | 0.001762 |
N | 205 | T205I | aCt | aTt | 5 | 5 | P.1.14 | 0.000239 |
N | 205 | T205I | aCt | aTt | 4 | 4 | A.2 | 0.002647 |
N | 205 | T205I | aCt | aTt | 4 | 4 | A.2.5.2 | 0.006289 |
N | 205 | T205I | aCt | aTt | 4 | 4 | AY.121 | 0.000541 |
N | 205 | T205I | aCt | aTt | 4 | 4 | AY.2 | 0.001425 |
N | 205 | T205I | aCt | aTt | 4 | 4 | AY.36 | 0.000593 |
N | 205 | T205I | aCt | aTt | 3 | 4 | AY.38 | 0.001498 |
N | 205 | T205I | aCT | aTC | 1 | 4 | AY.38 | 0.000499 |
N | 205 | T205I | aCt | aTt | 4 | 4 | AY.39.1 | 0.000158 |
N | 205 | T205I | aCt | aTt | 4 | 4 | AY.46.5 | 0.000794 |
N | 205 | T205I | aCt | aTt | 4 | 4 | AY.67 | 0.001857 |
N | 205 | T205I | aCt | aTt | 4 | 4 | AY.69 | 0.000747 |
N | 205 | T205I | aCt | aTt | 4 | 4 | B.1.1.220 | 0.007435 |
N | 205 | T205I | aCt | aTt | 4 | 4 | B.1.1.222 | 0.000816 |
N | 205 | T205I | aCt | aTt | 4 | 4 | B.1.1.464 | 0.005891 |
N | 205 | T205I | aCt | aTt | 4 | 4 | B.1.110.3 | 0.002874 |
N | 205 | T205I | aCt | aTt | 4 | 4 | B.1.147 | 0.003023 |
N | 205 | T205I | aCt | aTt | 4 | 4 | B.1.177.21 | 0.000306 |
N | 205 | T205I | aCt | aTt | 4 | 4 | B.1.181 | 0.078431 |
N | 205 | T205I | aCt | aTt | 4 | 4 | B.1.232 | 0.002149 |
N | 205 | T205I | aCt | aTt | 4 | 4 | B.1.241 | 0.003247 |
N | 205 | T205I | aCt | aTt | 4 | 4 | B.1.245 | 0.125 |
N | 205 | T205I | aCt | aTt | 4 | 4 | B.1.460 | 0.071429 |
N | 205 | T205I | aCt | aTt | 4 | 4 | B.1.478 | 0.047059 |
N | 205 | T205I | aCT | aTC | 3 | 4 | B.1.554 | 0.013216 |
N | 205 | T205I | aCt | aTt | 1 | 4 | B.1.554 | 0.004405 |
N | 205 | T205I | aCt | aTt | 4 | 4 | B.1.582 | 0.001963 |
N | 205 | T205I | aCt | aTt | 4 | 4 | B.1.600 | 0.023392 |
N | 205 | T205I | aCt | aTt | 4 | 4 | B.1.638 | 0.210526 |
N | 205 | T205I | aCt | aTt | 4 | 4 | P.1.15 | 0.000929 |
N | 205 | T205I | aCt | aTt | 3 | 3 | A.2.4 | 0.010101 |
N | 205 | T205I | aCt | aTt | 3 | 3 | A.3 | 0.006289 |
N | 205 | T205I | aCt | aTt | 3 | 3 | AY.111 | 0.000549 |
N | 205 | T205I | aCt | aTt | 3 | 3 | AY.113 | 0.000427 |
N | 205 | T205I | aCt | aTt | 3 | 3 | AY.46 | 0.000312 |
N | 205 | T205I | aCt | aTt | 3 | 3 | AY.59 | 0.001589 |
N | 205 | T205I | aCt | aTt | 2 | 3 | AY.65 | 0.001066 |
N | 205 | T205I | aCT | aTC | 1 | 3 | AY.65 | 0.000533 |
N | 205 | T205I | aCt | aTt | 3 | 3 | AY.75.1 | 0.000541 |
N | 205 | T205I | aCt | aTt | 3 | 3 | B.1.1.39 | 0.001529 |
N | 205 | T205I | aCt | aTt | 3 | 3 | B.1.1.507 | 0.026087 |
N | 205 | T205I | aCt | aTt | 3 | 3 | B.1.110 | 0.013575 |
N | 205 | T205I | aCt | aTt | 3 | 3 | B.1.177.45 | 0.001144 |
N | 205 | T205I | aCt | aTt | 3 | 3 | B.1.189 | 0.012876 |
N | 205 | T205I | aCt | aTt | 3 | 3 | B.1.22 | 0.003953 |
N | 205 | T205I | aCt | aTt | 3 | 3 | B.1.222 | 0.005076 |
N | 205 | T205I | aCt | aTt | 3 | 3 | B.1.356 | 0.005181 |
N | 205 | T205I | aCt | aTt | 3 | 3 | B.1.369 | 0.000856 |
N | 205 | T205I | aCt | aTt | 3 | 3 | B.1.382 | 0.026786 |
N | 205 | T205I | aCt | aTt | 3 | 3 | B.1.416.1 | 0.004687 |
N | 205 | T205I | aCt | aTt | 3 | 3 | B.1.436 | 0.003086 |
N | 205 | T205I | aCt | aTt | 3 | 3 | B.1.517 | 0.001281 |
N | 205 | T205I | aCT | aTC | 2 | 3 | B.1.617.1 | 0.000258 |
N | 205 | T205I | aCt | aTt | 1 | 3 | B.1.617.1 | 0.000129 |
N | 205 | T205I | aCt | aTt | 3 | 3 | B.1.9.5 | 0.017045 |
N | 205 | T205I | aCt | aTt | 3 | 3 | B.6.3 | 0.078947 |
N | 205 | T205I | aCt | aTt | 3 | 3 | B.6.6 | 0.002667 |
N | 205 | T205I | aCt | aTt | 3 | 3 | P.1.1 | 0.000953 |
N | 205 | T205I | aCt | aTt | 2 | 2 | AY.108 | 0.002205 |
N | 205 | T205I | aCt | aTt | 2 | 2 | AY.16 | 0.000759 |
N | 205 | T205I | aCt | aTt | 2 | 2 | AY.4.5 | 0.000215 |
N | 205 | T205I | aCt | aTt | 2 | 2 | AY.40 | 0.001929 |
N | 205 | T205I | aCt | aTt | 2 | 2 | AY.46.6 | 0.000144 |
N | 205 | T205I | aCt | aTt | 2 | 2 | AY.58 | 0.001815 |
N | 205 | T205I | aCt | aTt | 2 | 2 | AY.9.1 | 0.000167 |
N | 205 | T205I | aCt | aTt | 2 | 2 | AY.92 | 0.000575 |
N | 205 | T205I | aCt | aTt | 2 | 2 | B.1.1.186 | 0.006873 |
N | 205 | T205I | aCt | aTt | 2 | 2 | B.1.1.301 | 0.002358 |
N | 205 | T205I | aCt | aTt | 2 | 2 | B.1.1.306 | 0.000877 |
N | 205 | T205I | aCt | aTt | 2 | 2 | B.1.1.33 | 0.000842 |
N | 205 | T205I | aCt | aTt | 2 | 2 | B.1.1.448 | 0.004065 |
N | 205 | T205I | aCt | aTt | 2 | 2 | B.1.139 | 0.001466 |
N | 205 | T205I | aCt | aTt | 2 | 2 | B.1.140 | 0.037736 |
N | 205 | T205I | aCt | aTt | 2 | 2 | B.1.149 | 0.006849 |
N | 205 | T205I | aCt | aTt | 2 | 2 | B.1.164 | 0.029851 |
N | 205 | T205I | aCt | aTt | 2 | 2 | B.1.177.15 | 0.001262 |
N | 205 | T205I | aCt | aTt | 2 | 2 | B.1.177.81 | 0.000379 |
N | 205 | T205I | aCt | aTt | 2 | 2 | B.1.177.86 | 0.000367 |
N | 205 | T205I | aCt | aTt | 2 | 2 | B.1.224 | 0.05 |
N | 205 | T205I | aCT | aTC | 2 | 2 | B.1.237 | 0.00995 |
N | 205 | T205I | aCt | aTt | 2 | 2 | B.1.240 | 0.000431 |
N | 205 | T205I | aCt | aTt | 2 | 2 | B.1.243.1 | 0.044444 |
N | 205 | T205I | aCt | aTt | 2 | 2 | B.1.258.14 | 0.001961 |
N | 205 | T205I | aCt | aTt | 2 | 2 | B.1.281 | 0.043478 |
N | 205 | T205I | aCt | aTt | 2 | 2 | B.1.289 | 0.005319 |
N | 205 | T205I | aCt | aTt | 2 | 2 | B.1.340 | 0.008584 |
N | 205 | T205I | aCt | aTt | 2 | 2 | B.1.350 | 0.005865 |
N | 205 | T205I | aCt | aTt | 2 | 2 | B.1.36.18 | 0.00084 |
N | 205 | T205I | aCt | aTt | 2 | 2 | B.1.36.31 | 0.003503 |
N | 205 | T205I | aCt | aTt | 2 | 2 | B.1.36.8 | 0.002 |
N | 205 | T205I | aCt | aTt | 2 | 2 | B.1.37 | 0.029412 |
N | 205 | T205I | aCt | aTt | 2 | 2 | B.1.413 | 0.008511 |
N | 205 | T205I | aCt | aTt | 2 | 2 | B.1.451 | 0.016393 |
N | 205 | T205I | aCt | aTt | 2 | 2 | B.1.523 | 0.004902 |
N | 205 | T205I | aCt | aTt | 2 | 2 | B.1.629 | 0.026667 |
N | 205 | T205I | aCt | aTt | 2 | 2 | B.1.634 | 0.006849 |
N | 205 | T205I | aCt | aTt | 2 | 2 | B.1.84 | 0.041667 |
N | 205 | T205I | aCt | aTt | 2 | 2 | B.1.94 | 0.054054 |
N | 205 | T205I | aCt | aTt | 2 | 2 | B.23 | 0.005848 |
N | 205 | T205I | aCt | aTt | 2 | 2 | B.39 | 0.004662 |
N | 205 | T205I | aCt | aTt | 1 | 2 | C.37 | 0.000116 |
N | 205 | T205I | aCT | aTC | 1 | 2 | C.37 | 0.000116 |
N | 205 | T205I | aCt | aTt | 2 | 2 | Q.3 | 0.00029 |
N | 205 | T205I | aCt | aTt | 1 | 1 | A.12 | 0.166667 |
N | 205 | T205I | aCt | aTt | 1 | 1 | A.19 | 0.009434 |
N | 205 | T205I | aCt | aTt | 1 | 1 | AE.8 | 0.000489 |
N | 205 | T205I | aCt | aTt | 1 | 1 | AY.1 | 0.000396 |
N | 205 | T205I | aCt | aTt | 1 | 1 | AY.101 | 0.00049 |
N | 205 | T205I | aCt | aTt | 1 | 1 | AY.110 | 0.000113 |
N | 205 | T205I | aCt | aTt | 1 | 1 | AY.114 | 0.000231 |
N | 205 | T205I | aCt | aTt | 1 | 1 | AY.12 | 0.000316 |
N | 205 | T205I | aCt | aTt | 1 | 1 | AY.16.1 | 0.00047 |
N | 205 | T205I | aCt | aTt | 1 | 1 | AY.34 | 0.000097 |
N | 205 | T205I | aCt | aTt | 1 | 1 | AY.52 | 0.000814 |
N | 205 | T205I | aCt | aTt | 1 | 1 | AY.55 | 0.000917 |
N | 205 | T205I | aCt | aTt | 1 | 1 | AY.60 | 0.000938 |
N | 205 | T205I | aCt | aTt | 1 | 1 | AY.64 | 0.000595 |
N | 205 | T205I | aCt | aTt | 1 | 1 | AY.7 | 0.000196 |
N | 205 | T205I | aCt | aTt | 1 | 1 | AY.71 | 0.000475 |
N | 205 | T205I | aCt | aTt | 1 | 1 | AY.82 | 0.001357 |
N | 205 | T205I | aCt | aTt | 1 | 1 | AY.85 | 0.000427 |
N | 205 | T205I | aCt | aTt | 1 | 1 | AY.9 | 0.000068 |
N | 205 | T205I | aCt | aTt | 1 | 1 | AY.91 | 0.00073 |
N | 205 | T205I | aCT | aTC | 1 | 1 | AY.97 | 0.001701 |
N | 205 | T205I | aCT | aTC | 1 | 1 | AY.99 | 0.001049 |
N | 205 | T205I | aCt | aTt | 1 | 1 | AY.99.1 | 0.001553 |
N | 205 | T205I | aCt | aTt | 1 | 1 | AZ.3 | 0.00152 |
N | 205 | T205I | aCt | aTt | 1 | 1 | AZ.5 | 0.003509 |
N | 205 | T205I | aCt | aTt | 1 | 1 | B.1.1.176 | 0.000439 |
N | 205 | T205I | aCt | aTt | 1 | 1 | B.1.1.200 | 0.007463 |
N | 205 | T205I | aCt | aTt | 1 | 1 | B.1.1.228 | 0.003049 |
N | 205 | T205I | aCt | aTt | 1 | 1 | B.1.1.229 | 0.005747 |
N | 205 | T205I | aCt | aTt | 1 | 1 | B.1.1.25 | 0.000569 |
N | 205 | T205I | aCt | aTt | 1 | 1 | B.1.1.263 | 0.001558 |
N | 205 | T205I | aCt | aTt | 1 | 1 | B.1.1.312 | 0.001912 |
N | 205 | T205I | aCt | aTt | 1 | 1 | B.1.1.326 | 0.001761 |
N | 205 | T205I | aCt | aTt | 1 | 1 | B.1.1.372 | 0.000689 |
N | 205 | T205I | aCt | aTt | 1 | 1 | B.1.1.389 | 0.006061 |
N | 205 | T205I | aCt | aTt | 1 | 1 | B.1.1.432 | 0.001266 |
N | 205 | T205I | aCt | aTt | 1 | 1 | B.1.1.434 | 0.000349 |
N | 205 | T205I | aCt | aTt | 1 | 1 | B.1.1.44 | 0.00241 |
N | 205 | T205I | aCt | aTt | 1 | 1 | B.1.1.485 | 0.016667 |
N | 205 | T205I | aCt | aTt | 1 | 1 | B.1.1.51 | 0.001718 |
N | 205 | T205I | aCt | aTt | 1 | 1 | B.1.1.528 | 0.004808 |
N | 205 | T205I | aCt | aTt | 1 | 1 | B.1.1.54 | 0.003021 |
N | 205 | T205I | aCt | aTt | 1 | 1 | B.1.1.8 | 0.003584 |
N | 205 | T205I | aCt | aTt | 1 | 1 | B.1.105 | 0.009615 |
N | 205 | T205I | aCt | aTt | 1 | 1 | B.1.113 | 0.015625 |
N | 205 | T205I | aCt | aTt | 1 | 1 | B.1.119 | 0.010526 |
N | 205 | T205I | aCt | aTt | 1 | 1 | B.1.126 | 0.001276 |
N | 205 | T205I | aCt | aTt | 1 | 1 | B.1.128 | 0.000635 |
N | 205 | T205I | aCt | aTt | 1 | 1 | B.1.13 | 0.002375 |
N | 205 | T205I | aCt | aTt | 1 | 1 | B.1.158 | 0.02381 |
N | 205 | T205I | aCt | aTt | 1 | 1 | B.1.160.14 | 0.002119 |
N | 205 | T205I | aCt | aTt | 1 | 1 | B.1.160.7 | 0.002079 |
N | 205 | T205I | aCt | aTt | 1 | 1 | B.1.169 | 0.014925 |
N | 205 | T205I | aCt | aTt | 1 | 1 | B.1.177.31 | 0.011494 |
N | 205 | T205I | aCt | aTt | 1 | 1 | B.1.177.33 | 0.001645 |
N | 205 | T205I | aCt | aTt | 1 | 1 | B.1.177.43 | 0.001477 |
N | 205 | T205I | aCt | aTt | 1 | 1 | B.1.177.44 | 0.000519 |
N | 205 | T205I | aCt | aTt | 1 | 1 | B.1.177.5 | 0.001242 |
N | 205 | T205I | aCt | aTt | 1 | 1 | B.1.177.54 | 0.000606 |
N | 205 | T205I | aCt | aTt | 1 | 1 | B.1.177.56 | 0.000668 |
N | 205 | T205I | aCt | aTt | 1 | 1 | B.1.177.57 | 0.000281 |
N | 205 | T205I | aCt | aTt | 1 | 1 | B.1.177.8 | 0.000752 |
N | 205 | T205I | aCt | aTt | 1 | 1 | B.1.177.82 | 0.000477 |
N | 205 | T205I | aCt | aTt | 1 | 1 | B.1.177.87 | 0.000728 |
N | 205 | T205I | aCt | aTt | 1 | 1 | B.1.179 | 0.003759 |
N | 205 | T205I | aCt | aTt | 1 | 1 | B.1.182 | 0.007246 |
N | 205 | T205I | aCt | aTt | 1 | 1 | B.1.190 | 0.01 |
N | 205 | T205I | aCt | aTt | 1 | 1 | B.1.223 | 0.002778 |
N | 205 | T205I | aCt | aTt | 1 | 1 | B.1.247 | 0.014925 |
N | 205 | T205I | aCt | aTt | 1 | 1 | B.1.258.22 | 0.002667 |
N | 205 | T205I | aCt | aTt | 1 | 1 | B.1.264 | 0.012346 |
N | 205 | T205I | aCt | aTt | 1 | 1 | B.1.265 | 0.001271 |
N | 205 | T205I | aCt | aTt | 1 | 1 | B.1.306 | 0.005714 |
N | 205 | T205I | aCt | aTt | 1 | 1 | B.1.314 | 0.007519 |
N | 205 | T205I | aCt | aTt | 1 | 1 | B.1.319 | 0.003049 |
N | 205 | T205I | aCt | aTt | 1 | 1 | B.1.332 | 0.003497 |
N | 205 | T205I | aCt | aTt | 1 | 1 | B.1.337 | 0.005587 |
N | 205 | T205I | aCt | aTt | 1 | 1 | B.1.338 | 0.008621 |
N | 205 | T205I | aCt | aTt | 1 | 1 | B.1.35 | 0.008475 |
N | 205 | T205I | aCt | aTt | 1 | 1 | B.1.36.22 | 0.001208 |
N | 205 | T205I | aCt | aTt | 1 | 1 | B.1.362 | 0.001541 |
N | 205 | T205I | aCt | aTt | 1 | 1 | B.1.362.2 | 0.004717 |
N | 205 | T205I | aCt | aTt | 1 | 1 | B.1.385 | 0.010638 |
N | 205 | T205I | aCt | aTt | 1 | 1 | B.1.391 | 0.001127 |
N | 205 | T205I | aCt | aTt | 1 | 1 | B.1.393 | 0.028571 |
N | 205 | T205I | aCt | aTt | 1 | 1 | B.1.397 | 0.004854 |
N | 205 | T205I | aCt | aTt | 1 | 1 | B.1.404 | 0.001302 |
N | 205 | T205I | aCt | aTt | 1 | 1 | B.1.408 | 0.00369 |
N | 205 | T205I | aCt | aTt | 1 | 1 | B.1.438.1 | 0.000107 |
N | 205 | T205I | aCt | aTt | 1 | 1 | B.1.441 | 0.009615 |
N | 205 | T205I | aCt | aTt | 1 | 1 | B.1.444 | 0.015873 |
N | 205 | T205I | aCt | aTt | 1 | 1 | B.1.467 | 0.04 |
N | 205 | T205I | aCt | aTt | 1 | 1 | B.1.499 | 0.00105 |
N | 205 | T205I | aCt | aTt | 1 | 1 | B.1.521 | 0.004975 |
N | 205 | T205I | aCt | aTt | 1 | 1 | B.1.551 | 0.00129 |
N | 205 | T205I | aCt | aTt | 1 | 1 | B.1.558 | 0.004566 |
N | 205 | T205I | aCt | aTt | 1 | 1 | B.1.565 | 0.00081 |
N | 205 | T205I | aCt | aTt | 1 | 1 | B.1.570 | 0.002941 |
N | 205 | T205I | aCt | aTt | 1 | 1 | B.1.587 | 0.001898 |
N | 205 | T205I | aCt | aTt | 1 | 1 | B.1.594 | 0.03125 |
N | 205 | T205I | aCt | aTt | 1 | 1 | B.1.595.4 | 0.007299 |
N | 205 | T205I | aCt | aTt | 1 | 1 | B.1.625 | 0.002353 |
N | 205 | T205I | aCt | aTt | 1 | 1 | B.1.631 | 0.003367 |
N | 205 | T205I | aCt | aTt | 1 | 1 | B.20 | 0.023256 |
N | 205 | T205I | aCt | aTt | 1 | 1 | B.31 | 0.003731 |
N | 205 | T205I | aCt | aTt | 1 | 1 | B.34 | 0.013699 |
N | 205 | T205I | aCt | aTt | 1 | 1 | B.4 | 0.002208 |
N | 205 | T205I | aCt | aTt | 1 | 1 | B.4.1 | 0.018868 |
N | 205 | T205I | aCt | aTt | 1 | 1 | B.4.5 | 0.011905 |
N | 205 | T205I | aCt | aTt | 1 | 1 | B.52 | 0.010101 |
N | 205 | T205I | aCt | aTt | 1 | 1 | C.2 | 0.016129 |
N | 205 | T205I | aCt | aTt | 1 | 1 | C.37.1 | 0.002618 |
N | 205 | T205I | aCt | aTt | 1 | 1 | P.1.16 | 0.000374 |
N | 205 | T205I | aCt | aTt | 1 | 1 | P.1.7 | 0.000319 |
N | 205 | T205I | aCt | aTt | 1 | 1 | P.3 | 0.001595 |
N | 205 | T205I | aCt | aTt | 1 | 1 | Q.8 | 0.000165 |
N | 205 | T205I | aCt | aTt | 1 | 1 | U.3 | 0.003861 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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