CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : Mut = T16A

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N16T16AnonsynAcgGcg9699680.99896828319-28321
N16T16AnonsynAcGGcT96910.0010319928319-28321

Details of the mutation T16A within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N16T16AAcgGcg968969All0.000185
N16T16AAcGGcT1969All0
N16T16AAcgGcg846846AY.260.02395
N16T16AAcgGcg5858B.1.1.70.000052
N16T16AAcgGcg88AY.30.00008
N16T16AAcgGcg66AY.46.60.000433
N16T16AAcgGcg55AY.430.000022
N16T16AAcgGcg55B.1.20.000044
N16T16AAcgGcg55B.1.2430.000348
N16T16AAcgGcg44AY.98.10.000194
N16T16AAcgGcg44B.1.617.20.000015
N16T16AAcgGcg33AY.1130.000427
N16T16AAcgGcg23AY.40.000003
N16T16AAcGGcT13AY.40.000002
N16T16AAcgGcg22A.270.003311
N16T16AAcgGcg22AY.390.000049
N16T16AAcgGcg22AY.470.000062
N16T16AAcgGcg22B.1.10.000036
N16T16AAcgGcg22B.1.1.5190.000079
N16T16AAcgGcg11AY.1020.000027
N16T16AAcgGcg11AY.1180.000063
N16T16AAcgGcg11AY.230.00007
N16T16AAcgGcg11AY.250.000006
N16T16AAcgGcg11AY.39.10.00004
N16T16AAcgGcg11AY.440.000006
N16T16AAcgGcg11AY.75.10.00018
N16T16AAcgGcg11AY.810.001992
N16T16AAcgGcg11B.10.000009
N16T16AAcgGcg11B.1.2210.000071
N16T16AAcgGcg11B.1.5950.000261
N16T16AAcgGcg11Q.20.000613

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.