CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
N | 135 | T135I | nonsyn | aCt | aTt | 20664 | 20663 | 0.999952 | 28676-28678 | |
N | 135 | T135I | nonsyn | aCT | aTC | 20664 | 1 | 0.0000483933 | 28676-28678 |
Details of the mutation T135I within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
N | 135 | T135I | aCt | aTt | 20663 | 20664 | All | 0.003952 |
N | 135 | T135I | aCT | aTC | 1 | 20664 | All | 0 |
N | 135 | T135I | aCt | aTt | 5412 | 5412 | B.1.1.7 | 0.004845 |
N | 135 | T135I | aCt | aTt | 3179 | 3179 | B.1.311 | 0.872872 |
N | 135 | T135I | aCt | aTt | 1763 | 1763 | AY.4.2 | 0.038237 |
N | 135 | T135I | aCt | aTt | 1241 | 1241 | AY.4 | 0.001932 |
N | 135 | T135I | aCt | aTt | 1107 | 1107 | B.1.617.2 | 0.004168 |
N | 135 | T135I | aCt | aTt | 703 | 703 | AY.25 | 0.004228 |
N | 135 | T135I | aCt | aTt | 663 | 663 | B.1.2 | 0.005838 |
N | 135 | T135I | aCt | aTt | 639 | 639 | AY.103 | 0.003968 |
N | 135 | T135I | aCt | aTt | 417 | 417 | AY.43 | 0.001848 |
N | 135 | T135I | aCt | aTt | 322 | 322 | AY.44 | 0.00196 |
N | 135 | T135I | aCt | aTt | 315 | 315 | AY.3 | 0.003133 |
N | 135 | T135I | aCt | aTt | 299 | 299 | AY.14 | 0.026316 |
N | 135 | T135I | aCt | aTt | 282 | 282 | AY.26 | 0.007983 |
N | 135 | T135I | aCt | aTt | 266 | 266 | B.1.160 | 0.008296 |
N | 135 | T135I | aCt | aTt | 254 | 254 | P.1 | 0.004002 |
N | 135 | T135I | aCt | aTt | 240 | 240 | AY.47 | 0.007465 |
N | 135 | T135I | aCt | aTt | 144 | 144 | AY.5 | 0.002973 |
N | 135 | T135I | aCt | aTt | 120 | 120 | AY.75 | 0.006723 |
N | 135 | T135I | aCt | aTt | 114 | 114 | AY.39 | 0.002817 |
N | 135 | T135I | aCt | aTt | 107 | 107 | B.1.351 | 0.003181 |
N | 135 | T135I | aCt | aTt | 104 | 104 | B.1 | 0.000953 |
N | 135 | T135I | aCt | aTt | 103 | 103 | AY.102 | 0.002731 |
N | 135 | T135I | aCt | aTt | 100 | 100 | B.1.369 | 0.028523 |
N | 135 | T135I | aCt | aTt | 92 | 92 | AY.61 | 0.00964 |
N | 135 | T135I | aCt | aTt | 82 | 82 | B.1.1 | 0.001488 |
N | 135 | T135I | aCt | aTt | 80 | 80 | AY.9 | 0.005408 |
N | 135 | T135I | aCt | aTt | 78 | 78 | AY.20 | 0.003031 |
N | 135 | T135I | aCt | aTt | 78 | 78 | B.1.234 | 0.010292 |
N | 135 | T135I | aCt | aTt | 60 | 60 | AY.6 | 0.002468 |
N | 135 | T135I | aCt | aTt | 59 | 59 | B.1.177 | 0.000777 |
N | 135 | T135I | aCt | aTt | 55 | 55 | AY.29 | 0.000868 |
N | 135 | T135I | aCt | aTt | 55 | 55 | B.1.241 | 0.044643 |
N | 135 | T135I | aCt | aTt | 52 | 52 | B.1.517 | 0.022203 |
N | 135 | T135I | aCt | aTt | 51 | 51 | B.1.1.303 | 0.140884 |
N | 135 | T135I | aCt | aTt | 50 | 50 | B.1.480 | 0.124378 |
N | 135 | T135I | aCt | aTt | 48 | 48 | AY.99.2 | 0.004424 |
N | 135 | T135I | aCt | aTt | 46 | 46 | P.1.14 | 0.002199 |
N | 135 | T135I | aCt | aTt | 44 | 44 | B.1.1.519 | 0.001747 |
N | 135 | T135I | aCt | aTt | 44 | 44 | Q.5 | 0.745763 |
N | 135 | T135I | aCt | aTt | 44 | 44 | R.1 | 0.00396 |
N | 135 | T135I | aCt | aTt | 42 | 42 | B.1.36.1 | 0.047891 |
N | 135 | T135I | aCt | aTt | 38 | 38 | B.1.526 | 0.000893 |
N | 135 | T135I | aCt | aTt | 37 | 37 | AY.9.2 | 0.001359 |
N | 135 | T135I | aCt | aTt | 36 | 36 | AY.54 | 0.003432 |
N | 135 | T135I | aCt | aTt | 32 | 32 | AY.100 | 0.001472 |
N | 135 | T135I | aCt | aTt | 31 | 31 | AY.27 | 0.002006 |
N | 135 | T135I | aCt | aTt | 30 | 30 | AY.9.1 | 0.002512 |
N | 135 | T135I | aCt | aTt | 28 | 28 | AY.33 | 0.00187 |
N | 135 | T135I | aCt | aTt | 28 | 28 | AY.74 | 0.003238 |
N | 135 | T135I | aCt | aTt | 28 | 28 | B.1.619.1 | 0.01796 |
N | 135 | T135I | aCt | aTt | 27 | 27 | AY.78 | 0.041602 |
N | 135 | T135I | aCt | aTt | 26 | 26 | AY.46.6 | 0.001877 |
N | 135 | T135I | aCt | aTt | 26 | 26 | AY.51 | 0.023636 |
N | 135 | T135I | aCt | aTt | 26 | 26 | B.1.1.216 | 0.023152 |
N | 135 | T135I | aCt | aTt | 24 | 24 | AY.114 | 0.005547 |
N | 135 | T135I | aCt | aTt | 24 | 24 | AY.117 | 0.002028 |
N | 135 | T135I | aCt | aTt | 24 | 24 | AY.119 | 0.000847 |
N | 135 | T135I | aCt | aTt | 24 | 24 | AY.46 | 0.002498 |
N | 135 | T135I | aCt | aTt | 24 | 24 | B.1.427 | 0.001212 |
N | 135 | T135I | aCt | aTt | 22 | 22 | AY.110 | 0.002479 |
N | 135 | T135I | aCt | aTt | 22 | 22 | AY.45 | 0.002677 |
N | 135 | T135I | aCt | aTt | 22 | 22 | B.1.396 | 0.015526 |
N | 135 | T135I | aCt | aTt | 21 | 21 | AY.118 | 0.001316 |
N | 135 | T135I | aCt | aTt | 21 | 21 | AY.42 | 0.000845 |
N | 135 | T135I | aCt | aTt | 21 | 21 | B.1.429 | 0.000494 |
N | 135 | T135I | aCt | aTt | 20 | 20 | AY.13 | 0.00322 |
N | 135 | T135I | aCt | aTt | 20 | 20 | AY.39.1 | 0.000792 |
N | 135 | T135I | aCt | aTt | 19 | 19 | AY.120.1 | 0.0061 |
N | 135 | T135I | aCt | aTt | 19 | 19 | P.1.7 | 0.006066 |
N | 135 | T135I | aCt | aTt | 18 | 18 | AY.34 | 0.001745 |
N | 135 | T135I | aCt | aTt | 16 | 16 | AY.21 | 0.030361 |
N | 135 | T135I | aCt | aTt | 16 | 16 | P.1.17 | 0.002588 |
N | 135 | T135I | aCt | aTt | 15 | 15 | AY.23 | 0.001046 |
N | 135 | T135I | aCt | aTt | 15 | 15 | AY.75.1 | 0.002705 |
N | 135 | T135I | aCt | aTt | 15 | 15 | B.1.1.163 | 0.114504 |
N | 135 | T135I | aCt | aTt | 15 | 15 | B.1.236 | 0.030801 |
N | 135 | T135I | aCt | aTt | 14 | 14 | AY.120 | 0.000521 |
N | 135 | T135I | aCt | aTt | 14 | 14 | AY.29.1 | 0.003087 |
N | 135 | T135I | aCt | aTt | 14 | 14 | AY.48 | 0.006512 |
N | 135 | T135I | aCt | aTt | 14 | 14 | B.1.1.28 | 0.004357 |
N | 135 | T135I | aCt | aTt | 14 | 14 | C.37 | 0.001625 |
N | 135 | T135I | aCt | aTt | 13 | 13 | AY.107 | 0.006058 |
N | 135 | T135I | aCt | aTt | 13 | 13 | AY.71 | 0.006176 |
N | 135 | T135I | aCt | aTt | 13 | 13 | AY.84 | 0.005687 |
N | 135 | T135I | aCt | aTt | 13 | 13 | B.1.177.73 | 0.007361 |
N | 135 | T135I | aCt | aTt | 13 | 13 | B.1.258.17 | 0.001352 |
N | 135 | T135I | aCt | aTt | 12 | 12 | AY.3.1 | 0.001023 |
N | 135 | T135I | aCt | aTt | 12 | 12 | AY.46.4 | 0.001974 |
N | 135 | T135I | aCt | aTt | 12 | 12 | B.1.258 | 0.000799 |
N | 135 | T135I | aCt | aTt | 11 | 11 | AY.69 | 0.002053 |
N | 135 | T135I | aCt | aTt | 11 | 11 | B.1.177.69 | 0.01632 |
N | 135 | T135I | aCt | aTt | 11 | 11 | B.1.575 | 0.003337 |
N | 135 | T135I | aCt | aTt | 11 | 11 | B.1.637 | 0.000804 |
N | 135 | T135I | aCt | aTt | 10 | 10 | AY.111 | 0.001832 |
N | 135 | T135I | aCt | aTt | 10 | 10 | AY.34.1 | 0.005099 |
N | 135 | T135I | aCt | aTt | 10 | 10 | AY.38 | 0.004993 |
N | 135 | T135I | aCt | aTt | 10 | 10 | AY.58 | 0.009074 |
N | 135 | T135I | aCt | aTt | 10 | 10 | P.1.15 | 0.002323 |
N | 135 | T135I | aCt | aTt | 9 | 9 | AY.101 | 0.004414 |
N | 135 | T135I | aCt | aTt | 9 | 9 | AY.24 | 0.003879 |
N | 135 | T135I | aCt | aTt | 9 | 9 | AY.5.3 | 0.003036 |
N | 135 | T135I | aCt | aTt | 9 | 9 | AY.98 | 0.000711 |
N | 135 | T135I | aCt | aTt | 9 | 9 | B.1.36 | 0.001313 |
N | 135 | T135I | aCt | aTt | 9 | 9 | D.2 | 0.000675 |
N | 135 | T135I | aCt | aTt | 9 | 9 | Q.3 | 0.001305 |
N | 135 | T135I | aCt | aTt | 8 | 8 | AY.4.1 | 0.0059 |
N | 135 | T135I | aCt | aTt | 8 | 8 | AY.62 | 0.003486 |
N | 135 | T135I | aCt | aTt | 8 | 8 | AY.65 | 0.004264 |
N | 135 | T135I | aCt | aTt | 8 | 8 | AY.67 | 0.003714 |
N | 135 | T135I | aCt | aTt | 8 | 8 | B.1.160.14 | 0.016949 |
N | 135 | T135I | aCt | aTt | 8 | 8 | B.1.351.2 | 0.002421 |
N | 135 | T135I | aCt | aTt | 8 | 8 | B.1.596 | 0.000697 |
N | 135 | T135I | aCt | aTt | 8 | 8 | P.1.1 | 0.002541 |
N | 135 | T135I | aCt | aTt | 7 | 7 | AY.121 | 0.000947 |
N | 135 | T135I | aCt | aTt | 7 | 7 | AY.57 | 0.004593 |
N | 135 | T135I | aCt | aTt | 7 | 7 | AY.99 | 0.007345 |
N | 135 | T135I | aCt | aTt | 7 | 7 | B.1.1.353 | 0.145833 |
N | 135 | T135I | aCt | aTt | 7 | 7 | B.1.1.391 | 0.059829 |
N | 135 | T135I | aCt | aTt | 7 | 7 | B.1.240 | 0.001509 |
N | 135 | T135I | aCt | aTt | 7 | 7 | B.1.279 | 0.003595 |
N | 135 | T135I | aCt | aTt | 7 | 7 | B.1.375 | 0.005738 |
N | 135 | T135I | aCt | aTt | 6 | 6 | AY.113 | 0.000854 |
N | 135 | T135I | aCt | aTt | 6 | 6 | AY.116 | 0.001721 |
N | 135 | T135I | aCt | aTt | 6 | 6 | AY.4.5 | 0.000645 |
N | 135 | T135I | aCt | aTt | 6 | 6 | AY.7 | 0.001176 |
N | 135 | T135I | aCt | aTt | 6 | 6 | AY.98.1 | 0.000291 |
N | 135 | T135I | aCt | aTt | 6 | 6 | B.1.1.294 | 0.007595 |
N | 135 | T135I | aCt | aTt | 5 | 6 | B.1.1.33 | 0.002104 |
N | 135 | T135I | aCT | aTC | 1 | 6 | B.1.1.33 | 0.000421 |
N | 135 | T135I | aCt | aTt | 6 | 6 | B.1.565 | 0.004862 |
N | 135 | T135I | aCt | aTt | 6 | 6 | B.1.617.1 | 0.000774 |
N | 135 | T135I | aCt | aTt | 6 | 6 | P.1.12 | 0.002904 |
N | 135 | T135I | aCt | aTt | 5 | 5 | AY.105 | 0.003215 |
N | 135 | T135I | aCt | aTt | 5 | 5 | AY.106 | 0.001674 |
N | 135 | T135I | aCt | aTt | 5 | 5 | AY.16 | 0.001898 |
N | 135 | T135I | aCt | aTt | 5 | 5 | AY.4.4 | 0.002046 |
N | 135 | T135I | aCt | aTt | 5 | 5 | AY.50 | 0.003997 |
N | 135 | T135I | aCt | aTt | 5 | 5 | AY.55 | 0.004587 |
N | 135 | T135I | aCt | aTt | 5 | 5 | AY.59 | 0.002648 |
N | 135 | T135I | aCt | aTt | 5 | 5 | B.1.1.25 | 0.002843 |
N | 135 | T135I | aCt | aTt | 5 | 5 | B.1.1.398 | 0.016129 |
N | 135 | T135I | aCt | aTt | 5 | 5 | B.1.1.51 | 0.008591 |
N | 135 | T135I | aCt | aTt | 5 | 5 | B.1.177.86 | 0.000917 |
N | 135 | T135I | aCt | aTt | 5 | 5 | B.1.221 | 0.000355 |
N | 135 | T135I | aCt | aTt | 5 | 5 | C.36.3 | 0.002836 |
N | 135 | T135I | aCt | aTt | 5 | 5 | Q.8 | 0.000825 |
N | 135 | T135I | aCt | aTt | 4 | 4 | AY.16.1 | 0.00188 |
N | 135 | T135I | aCt | aTt | 4 | 4 | AY.63 | 0.001547 |
N | 135 | T135I | aCt | aTt | 4 | 4 | AY.85 | 0.001709 |
N | 135 | T135I | aCt | aTt | 4 | 4 | AY.9.2.1 | 0.007905 |
N | 135 | T135I | aCt | aTt | 4 | 4 | AY.93 | 0.001092 |
N | 135 | T135I | aCt | aTt | 4 | 4 | AZ.1 | 0.003469 |
N | 135 | T135I | aCt | aTt | 4 | 4 | B.1.1.70 | 0.001364 |
N | 135 | T135I | aCt | aTt | 4 | 4 | B.1.243 | 0.000278 |
N | 135 | T135I | aCt | aTt | 4 | 4 | B.1.466.2 | 0.001565 |
N | 135 | T135I | aCt | aTt | 4 | 4 | B.1.471 | 0.010929 |
N | 135 | T135I | aCt | aTt | 4 | 4 | B.1.497 | 0.001259 |
N | 135 | T135I | aCt | aTt | 4 | 4 | B.1.564 | 0.001704 |
N | 135 | T135I | aCt | aTt | 4 | 4 | B.1.599 | 0.014599 |
N | 135 | T135I | aCt | aTt | 4 | 4 | B.1.621 | 0.000354 |
N | 135 | T135I | aCt | aTt | 4 | 4 | P.1.16 | 0.001496 |
N | 135 | T135I | aCt | aTt | 4 | 4 | Q.1 | 0.000505 |
N | 135 | T135I | aCt | aTt | 3 | 3 | AY.116.1 | 0.000934 |
N | 135 | T135I | aCt | aTt | 3 | 3 | AY.2 | 0.001068 |
N | 135 | T135I | aCt | aTt | 3 | 3 | AY.35 | 0.000699 |
N | 135 | T135I | aCt | aTt | 3 | 3 | AY.4.2.1 | 0.000447 |
N | 135 | T135I | aCt | aTt | 3 | 3 | AY.41 | 0.000882 |
N | 135 | T135I | aCt | aTt | 3 | 3 | AY.46.5 | 0.000595 |
N | 135 | T135I | aCt | aTt | 3 | 3 | AY.64 | 0.001786 |
N | 135 | T135I | aCt | aTt | 3 | 3 | AY.73 | 0.001996 |
N | 135 | T135I | aCt | aTt | 3 | 3 | AY.90 | 0.002053 |
N | 135 | T135I | aCt | aTt | 3 | 3 | B | 0.000383 |
N | 135 | T135I | aCt | aTt | 3 | 3 | B.1.1.117 | 0.029126 |
N | 135 | T135I | aCt | aTt | 3 | 3 | B.1.1.222 | 0.000612 |
N | 135 | T135I | aCt | aTt | 3 | 3 | B.1.1.243 | 0.012245 |
N | 135 | T135I | aCt | aTt | 3 | 3 | B.1.1.318 | 0.000905 |
N | 135 | T135I | aCt | aTt | 3 | 3 | B.1.1.416 | 0.002715 |
N | 135 | T135I | aCt | aTt | 3 | 3 | B.1.1.518 | 0.018987 |
N | 135 | T135I | aCt | aTt | 3 | 3 | B.1.119 | 0.031579 |
N | 135 | T135I | aCt | aTt | 3 | 3 | B.1.177.75 | 0.003122 |
N | 135 | T135I | aCt | aTt | 3 | 3 | B.1.438.1 | 0.000322 |
N | 135 | T135I | aCt | aTt | 3 | 3 | B.1.469 | 0.01083 |
N | 135 | T135I | aCt | aTt | 3 | 3 | B.1.582 | 0.001472 |
N | 135 | T135I | aCt | aTt | 3 | 3 | B.1.595.2 | 0.12 |
N | 135 | T135I | aCt | aTt | 3 | 3 | C.36 | 0.002732 |
N | 135 | T135I | aCt | aTt | 3 | 3 | Q.2 | 0.00184 |
N | 135 | T135I | aCt | aTt | 2 | 2 | A | 0.000774 |
N | 135 | T135I | aCt | aTt | 2 | 2 | A.2 | 0.001324 |
N | 135 | T135I | aCt | aTt | 2 | 2 | AY.10 | 0.00106 |
N | 135 | T135I | aCt | aTt | 2 | 2 | AY.11 | 0.002677 |
N | 135 | T135I | aCt | aTt | 2 | 2 | AY.115 | 0.010417 |
N | 135 | T135I | aCt | aTt | 2 | 2 | AY.19 | 0.002281 |
N | 135 | T135I | aCt | aTt | 2 | 2 | AY.31 | 0.037037 |
N | 135 | T135I | aCt | aTt | 2 | 2 | AY.36 | 0.000296 |
N | 135 | T135I | aCt | aTt | 2 | 2 | AY.37 | 0.000632 |
N | 135 | T135I | aCt | aTt | 2 | 2 | AY.5.4 | 0.000553 |
N | 135 | T135I | aCt | aTt | 2 | 2 | AY.60 | 0.001876 |
N | 135 | T135I | aCt | aTt | 2 | 2 | AY.8 | 0.001212 |
N | 135 | T135I | aCt | aTt | 2 | 2 | AY.89 | 0.009804 |
N | 135 | T135I | aCt | aTt | 2 | 2 | B.1.1.153 | 0.002191 |
N | 135 | T135I | aCt | aTt | 2 | 2 | B.1.1.214 | 0.000111 |
N | 135 | T135I | aCt | aTt | 2 | 2 | B.1.1.306 | 0.000877 |
N | 135 | T135I | aCt | aTt | 2 | 2 | B.1.1.50 | 0.001358 |
N | 135 | T135I | aCt | aTt | 2 | 2 | B.1.1.523 | 0.003125 |
N | 135 | T135I | aCt | aTt | 2 | 2 | B.1.1.63 | 0.000772 |
N | 135 | T135I | aCt | aTt | 2 | 2 | B.1.126 | 0.002551 |
N | 135 | T135I | aCt | aTt | 2 | 2 | B.1.147 | 0.001512 |
N | 135 | T135I | aCt | aTt | 2 | 2 | B.1.177.21 | 0.000153 |
N | 135 | T135I | aCt | aTt | 2 | 2 | B.1.177.30 | 0.005025 |
N | 135 | T135I | aCt | aTt | 2 | 2 | B.1.177.4 | 0.000422 |
N | 135 | T135I | aCt | aTt | 2 | 2 | B.1.177.77 | 0.001452 |
N | 135 | T135I | aCt | aTt | 2 | 2 | B.1.351.1 | 0.076923 |
N | 135 | T135I | aCt | aTt | 2 | 2 | B.1.36.8 | 0.002 |
N | 135 | T135I | aCt | aTt | 2 | 2 | B.1.367 | 0.001585 |
N | 135 | T135I | aCt | aTt | 2 | 2 | B.1.398 | 0.005952 |
N | 135 | T135I | aCt | aTt | 2 | 2 | B.1.400 | 0.000858 |
N | 135 | T135I | aCt | aTt | 2 | 2 | B.1.525 | 0.000226 |
N | 135 | T135I | aCt | aTt | 2 | 2 | B.1.538 | 0.016129 |
N | 135 | T135I | aCt | aTt | 2 | 2 | B.1.609 | 0.000959 |
N | 135 | T135I | aCt | aTt | 2 | 2 | B.1.623 | 0.001073 |
N | 135 | T135I | aCt | aTt | 2 | 2 | B.1.627 | 0.00404 |
N | 135 | T135I | aCt | aTt | 2 | 2 | B.1.638 | 0.105263 |
N | 135 | T135I | aCt | aTt | 2 | 2 | N.5 | 0.003534 |
N | 135 | T135I | aCt | aTt | 2 | 2 | P.1.2 | 0.002312 |
N | 135 | T135I | aCt | aTt | 2 | 2 | P.1.8 | 0.009569 |
N | 135 | T135I | aCt | aTt | 2 | 2 | P.2 | 0.000373 |
N | 135 | T135I | aCt | aTt | 1 | 1 | A.2.5.2 | 0.001572 |
N | 135 | T135I | aCt | aTt | 1 | 1 | A.21 | 0.00277 |
N | 135 | T135I | aCt | aTt | 1 | 1 | AD.2 | 0.000219 |
N | 135 | T135I | aCt | aTt | 1 | 1 | AE.8 | 0.000489 |
N | 135 | T135I | aCt | aTt | 1 | 1 | AU.3 | 0.00211 |
N | 135 | T135I | aCt | aTt | 1 | 1 | AY.1 | 0.000396 |
N | 135 | T135I | aCt | aTt | 1 | 1 | AY.104 | 0.001984 |
N | 135 | T135I | aCt | aTt | 1 | 1 | AY.108 | 0.001103 |
N | 135 | T135I | aCt | aTt | 1 | 1 | AY.12 | 0.000316 |
N | 135 | T135I | aCt | aTt | 1 | 1 | AY.15 | 0.002222 |
N | 135 | T135I | aCt | aTt | 1 | 1 | AY.28 | 0.00189 |
N | 135 | T135I | aCt | aTt | 1 | 1 | AY.4.3 | 0.000842 |
N | 135 | T135I | aCt | aTt | 1 | 1 | AY.46.1 | 0.001027 |
N | 135 | T135I | aCt | aTt | 1 | 1 | AY.46.2 | 0.000635 |
N | 135 | T135I | aCt | aTt | 1 | 1 | AY.46.3 | 0.000934 |
N | 135 | T135I | aCt | aTt | 1 | 1 | AY.49 | 0.003195 |
N | 135 | T135I | aCt | aTt | 1 | 1 | AY.52 | 0.000814 |
N | 135 | T135I | aCt | aTt | 1 | 1 | AY.53 | 0.000288 |
N | 135 | T135I | aCt | aTt | 1 | 1 | AY.56 | 0.001605 |
N | 135 | T135I | aCt | aTt | 1 | 1 | AY.7.1 | 0.000113 |
N | 135 | T135I | aCt | aTt | 1 | 1 | AY.70 | 0.000209 |
N | 135 | T135I | aCt | aTt | 1 | 1 | AY.79 | 0.001211 |
N | 135 | T135I | aCt | aTt | 1 | 1 | AY.82 | 0.001357 |
N | 135 | T135I | aCt | aTt | 1 | 1 | AY.91 | 0.00073 |
N | 135 | T135I | aCt | aTt | 1 | 1 | AY.92 | 0.000287 |
N | 135 | T135I | aCt | aTt | 1 | 1 | AY.94 | 0.000443 |
N | 135 | T135I | aCt | aTt | 1 | 1 | B.1.1.1 | 0.000327 |
N | 135 | T135I | aCt | aTt | 1 | 1 | B.1.1.182 | 0.090909 |
N | 135 | T135I | aCt | aTt | 1 | 1 | B.1.1.189 | 0.001513 |
N | 135 | T135I | aCt | aTt | 1 | 1 | B.1.1.239 | 0.032258 |
N | 135 | T135I | aCt | aTt | 1 | 1 | B.1.1.277 | 0.000759 |
N | 135 | T135I | aCt | aTt | 1 | 1 | B.1.1.289 | 0.002083 |
N | 135 | T135I | aCt | aTt | 1 | 1 | B.1.1.29 | 0.010309 |
N | 135 | T135I | aCt | aTt | 1 | 1 | B.1.1.311 | 0.000358 |
N | 135 | T135I | aCt | aTt | 1 | 1 | B.1.1.315 | 0.008475 |
N | 135 | T135I | aCt | aTt | 1 | 1 | B.1.1.322 | 0.008772 |
N | 135 | T135I | aCt | aTt | 1 | 1 | B.1.1.335 | 0.012987 |
N | 135 | T135I | aCt | aTt | 1 | 1 | B.1.1.369 | 0.000446 |
N | 135 | T135I | aCt | aTt | 1 | 1 | B.1.1.397 | 0.002252 |
N | 135 | T135I | aCt | aTt | 1 | 1 | B.1.1.450 | 0.034483 |
N | 135 | T135I | aCt | aTt | 1 | 1 | B.1.1.5 | 0.008333 |
N | 135 | T135I | aCt | aTt | 1 | 1 | B.1.1.514 | 0.038462 |
N | 135 | T135I | aCt | aTt | 1 | 1 | B.1.1.52 | 0.012195 |
N | 135 | T135I | aCt | aTt | 1 | 1 | B.1.1.525 | 0.005464 |
N | 135 | T135I | aCt | aTt | 1 | 1 | B.1.115 | 0.021739 |
N | 135 | T135I | aCt | aTt | 1 | 1 | B.1.160.16 | 0.000929 |
N | 135 | T135I | aCt | aTt | 1 | 1 | B.1.160.26 | 0.002421 |
N | 135 | T135I | aCt | aTt | 1 | 1 | B.1.177.19 | 0.001431 |
N | 135 | T135I | aCt | aTt | 1 | 1 | B.1.177.43 | 0.001477 |
N | 135 | T135I | aCt | aTt | 1 | 1 | B.1.177.81 | 0.000189 |
N | 135 | T135I | aCt | aTt | 1 | 1 | B.1.177.84 | 0.006667 |
N | 135 | T135I | aCt | aTt | 1 | 1 | B.1.206 | 0.000816 |
N | 135 | T135I | aCt | aTt | 1 | 1 | B.1.221.4 | 0.004167 |
N | 135 | T135I | aCt | aTt | 1 | 1 | B.1.239 | 0.001221 |
N | 135 | T135I | aCt | aTt | 1 | 1 | B.1.250 | 0.014493 |
N | 135 | T135I | aCt | aTt | 1 | 1 | B.1.258.3 | 0.001675 |
N | 135 | T135I | aCt | aTt | 1 | 1 | B.1.258.7 | 0.001912 |
N | 135 | T135I | aCt | aTt | 1 | 1 | B.1.328 | 0.03125 |
N | 135 | T135I | aCt | aTt | 1 | 1 | B.1.351.5 | 0.0006 |
N | 135 | T135I | aCt | aTt | 1 | 1 | B.1.36.12 | 0.009615 |
N | 135 | T135I | aCt | aTt | 1 | 1 | B.1.36.29 | 0.000517 |
N | 135 | T135I | aCt | aTt | 1 | 1 | B.1.361 | 0.001289 |
N | 135 | T135I | aCt | aTt | 1 | 1 | B.1.391 | 0.001127 |
N | 135 | T135I | aCt | aTt | 1 | 1 | B.1.404 | 0.001302 |
N | 135 | T135I | aCt | aTt | 1 | 1 | B.1.422 | 0.000812 |
N | 135 | T135I | aCt | aTt | 1 | 1 | B.1.428 | 0.00102 |
N | 135 | T135I | aCt | aTt | 1 | 1 | B.1.499 | 0.00105 |
N | 135 | T135I | aCt | aTt | 1 | 1 | B.1.510 | 0.026316 |
N | 135 | T135I | aCt | aTt | 1 | 1 | B.1.524 | 0.001406 |
N | 135 | T135I | aCt | aTt | 1 | 1 | B.1.551 | 0.00129 |
N | 135 | T135I | aCt | aTt | 1 | 1 | B.1.561 | 0.000397 |
N | 135 | T135I | aCt | aTt | 1 | 1 | B.1.562 | 0.018519 |
N | 135 | T135I | aCt | aTt | 1 | 1 | B.1.567 | 0.003333 |
N | 135 | T135I | aCt | aTt | 1 | 1 | B.1.576 | 0.000907 |
N | 135 | T135I | aCt | aTt | 1 | 1 | B.1.595 | 0.000261 |
N | 135 | T135I | aCt | aTt | 1 | 1 | B.1.597 | 0.00463 |
N | 135 | T135I | aCt | aTt | 1 | 1 | B.1.620 | 0.000946 |
N | 135 | T135I | aCt | aTt | 1 | 1 | B.40 | 0.000364 |
N | 135 | T135I | aCt | aTt | 1 | 1 | C.1.2 | 0.004255 |
N | 135 | T135I | aCt | aTt | 1 | 1 | C.14 | 0.004329 |
N | 135 | T135I | aCt | aTt | 1 | 1 | C.18 | 0.002591 |
N | 135 | T135I | aCt | aTt | 1 | 1 | C.36.1 | 0.004149 |
N | 135 | T135I | aCt | aTt | 1 | 1 | C.37.1 | 0.002618 |
N | 135 | T135I | aCt | aTt | 1 | 1 | Q.4 | 0.000455 |
N | 135 | T135I | aCt | aTt | 1 | 1 | U.3 | 0.003861 |
N | 135 | T135I | aCt | aTt | 1 | 1 | W.4 | 0.001351 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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