CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
N | 327 | S327L | nonsyn | tCg | tTg | 59465 | 59444 | 0.999647 | 29252-29254 | |
N | 327 | S327L | nonsyn | tCG | tTA | 59465 | 21 | 0.000353149 | 29252-29254 |
Details of the mutation S327L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
N | 327 | S327L | tCg | tTg | 59444 | 59465 | All | 0.011369 |
N | 327 | S327L | tCG | tTA | 21 | 59465 | All | 0.000004 |
N | 327 | S327L | tCg | tTg | 41406 | 41406 | AY.5 | 0.855001 |
N | 327 | S327L | tCg | tTg | 3181 | 3181 | AY.4 | 0.004951 |
N | 327 | S327L | tCg | tTg | 2921 | 2921 | AY.5.4 | 0.808246 |
N | 327 | S327L | tCg | tTg | 2224 | 2224 | AY.5.3 | 0.750337 |
N | 327 | S327L | tCg | tTg | 1561 | 1561 | B.1.1.7 | 0.001397 |
N | 327 | S327L | tCg | tTg | 897 | 897 | B.1.617.2 | 0.003378 |
N | 327 | S327L | tCg | tTg | 589 | 589 | B.1.429 | 0.013858 |
N | 327 | S327L | tCg | tTg | 573 | 573 | AY.97 | 0.97449 |
N | 327 | S327L | tCg | tTg | 572 | 572 | B.1.2 | 0.005037 |
N | 327 | S327L | tCg | tTg | 405 | 405 | AY.5.2 | 0.997537 |
N | 327 | S327L | tCg | tTg | 265 | 265 | AY.43 | 0.001174 |
N | 327 | S327L | tCg | tTg | 265 | 265 | AY.5.1 | 0.996241 |
N | 327 | S327L | tCg | tTg | 213 | 213 | AY.47 | 0.006625 |
N | 327 | S327L | tCg | tTg | 208 | 208 | AY.25 | 0.001251 |
N | 327 | S327L | tCg | tTg | 189 | 189 | B.1 | 0.001731 |
N | 327 | S327L | tCg | tTg | 179 | 179 | AY.3 | 0.00178 |
N | 327 | S327L | tCg | tTg | 167 | 179 | AY.44 | 0.001016 |
N | 327 | S327L | tCG | tTA | 12 | 179 | AY.44 | 0.000073 |
N | 327 | S327L | tCg | tTg | 159 | 159 | AY.103 | 0.000987 |
N | 327 | S327L | tCg | tTg | 132 | 132 | P.1 | 0.00208 |
N | 327 | S327L | tCg | tTg | 131 | 131 | AY.120 | 0.00487 |
N | 327 | S327L | tCg | tTg | 114 | 114 | B.1.177 | 0.001501 |
N | 327 | S327L | tCg | tTg | 104 | 104 | R.1 | 0.009361 |
N | 327 | S327L | tCg | tTg | 90 | 91 | B.1.221 | 0.006393 |
N | 327 | S327L | tCG | tTA | 1 | 91 | B.1.221 | 0.000071 |
N | 327 | S327L | tCg | tTg | 85 | 85 | AY.4.2.1 | 0.012664 |
N | 327 | S327L | tCg | tTg | 82 | 82 | AY.42 | 0.003299 |
N | 327 | S327L | tCg | tTg | 80 | 80 | B.1.526 | 0.00188 |
N | 327 | S327L | tCg | tTg | 78 | 78 | B.1.243 | 0.005428 |
N | 327 | S327L | tCg | tTg | 76 | 76 | B.1.1.222 | 0.015504 |
N | 327 | S327L | tCg | tTg | 67 | 69 | AY.29 | 0.001057 |
N | 327 | S327L | tCG | tTA | 2 | 69 | AY.29 | 0.000032 |
N | 327 | S327L | tCg | tTg | 58 | 58 | AY.3.1 | 0.004945 |
N | 327 | S327L | tCg | tTg | 58 | 58 | B.1.36 | 0.008462 |
N | 327 | S327L | tCg | tTg | 56 | 56 | AY.46.5 | 0.011111 |
N | 327 | S327L | tCg | tTg | 53 | 53 | AY.4.2 | 0.00115 |
N | 327 | S327L | tCg | tTg | 50 | 50 | B.1.1 | 0.000907 |
N | 327 | S327L | tCg | tTg | 50 | 50 | P.2 | 0.009332 |
N | 327 | S327L | tCg | tTg | 49 | 49 | AY.63 | 0.018956 |
N | 327 | S327L | tCg | tTg | 46 | 46 | AY.6 | 0.001892 |
N | 327 | S327L | tCg | tTg | 45 | 45 | P.1.10 | 0.012126 |
N | 327 | S327L | tCg | tTg | 43 | 43 | B.1.570 | 0.126471 |
N | 327 | S327L | tCg | tTg | 42 | 42 | AY.20 | 0.001632 |
N | 327 | S327L | tCg | tTg | 41 | 41 | P.1.7 | 0.013091 |
N | 327 | S327L | tCg | tTg | 40 | 40 | AY.23 | 0.00279 |
N | 327 | S327L | tCg | tTg | 40 | 40 | C.37 | 0.004643 |
N | 327 | S327L | tCg | tTg | 37 | 37 | AY.29.1 | 0.008159 |
N | 327 | S327L | tCg | tTg | 37 | 37 | AY.69 | 0.006907 |
N | 327 | S327L | tCg | tTg | 36 | 36 | AY.39 | 0.00089 |
N | 327 | S327L | tCg | tTg | 36 | 36 | B.1.258.17 | 0.003743 |
N | 327 | S327L | tCg | tTg | 33 | 33 | Q.1 | 0.004169 |
N | 327 | S327L | tCg | tTg | 31 | 31 | AY.26 | 0.000878 |
N | 327 | S327L | tCg | tTg | 31 | 31 | B.1.1.519 | 0.001231 |
N | 327 | S327L | tCg | tTg | 31 | 31 | B.1.351 | 0.000922 |
N | 327 | S327L | tCg | tTg | 29 | 29 | AY.120.1 | 0.00931 |
N | 327 | S327L | tCg | tTg | 29 | 29 | B.1.160 | 0.000904 |
N | 327 | S327L | tCg | tTg | 29 | 29 | B.1.177.81 | 0.00549 |
N | 327 | S327L | tCg | tTg | 28 | 28 | AY.119 | 0.000989 |
N | 327 | S327L | tCg | tTg | 28 | 28 | AY.39.1 | 0.001109 |
N | 327 | S327L | tCg | tTg | 27 | 27 | AY.118 | 0.001692 |
N | 327 | S327L | tCg | tTg | 27 | 27 | AY.40 | 0.026037 |
N | 327 | S327L | tCg | tTg | 27 | 27 | AY.99.2 | 0.002488 |
N | 327 | S327L | tCg | tTg | 27 | 27 | B.1.604 | 0.465517 |
N | 327 | S327L | tCg | tTg | 26 | 26 | AY.111 | 0.004762 |
N | 327 | S327L | tCg | tTg | 26 | 26 | B.1.258 | 0.00173 |
N | 327 | S327L | tCg | tTg | 26 | 26 | B.1.621 | 0.002301 |
N | 327 | S327L | tCg | tTg | 25 | 25 | B.1.438.1 | 0.002682 |
N | 327 | S327L | tCg | tTg | 23 | 23 | AY.102 | 0.00061 |
N | 327 | S327L | tCg | tTg | 23 | 23 | B.1.351.2 | 0.006959 |
N | 327 | S327L | tCg | tTg | 22 | 22 | AY.92 | 0.00632 |
N | 327 | S327L | tCg | tTg | 21 | 21 | AY.46 | 0.002186 |
N | 327 | S327L | tCg | tTg | 21 | 21 | AY.75 | 0.001176 |
N | 327 | S327L | tCg | tTg | 21 | 21 | B.1.234 | 0.002771 |
N | 327 | S327L | tCg | tTg | 21 | 21 | B.1.596 | 0.00183 |
N | 327 | S327L | tCg | tTg | 20 | 20 | AY.41 | 0.005879 |
N | 327 | S327L | tCg | tTg | 20 | 20 | B.1.177.4 | 0.004221 |
N | 327 | S327L | tCg | tTg | 20 | 20 | P.1.14 | 0.000956 |
N | 327 | S327L | tCg | tTg | 18 | 18 | AY.117 | 0.001521 |
N | 327 | S327L | tCg | tTg | 17 | 17 | P.1.4 | 0.016602 |
N | 327 | S327L | tCg | tTg | 16 | 16 | AY.93 | 0.004369 |
N | 327 | S327L | tCg | tTg | 16 | 16 | AY.98 | 0.001264 |
N | 327 | S327L | tCg | tTg | 15 | 15 | AY.120.2 | 0.01928 |
N | 327 | S327L | tCg | tTg | 15 | 15 | AY.45 | 0.001825 |
N | 327 | S327L | tCg | tTg | 15 | 15 | P.1.15 | 0.003485 |
N | 327 | S327L | tCg | tTg | 14 | 14 | AY.106 | 0.004689 |
N | 327 | S327L | tCg | tTg | 14 | 14 | AY.116.1 | 0.00436 |
N | 327 | S327L | tCg | tTg | 14 | 14 | AY.54 | 0.001335 |
N | 327 | S327L | tCg | tTg | 14 | 14 | B.1.427 | 0.000707 |
N | 327 | S327L | tCg | tTg | 13 | 13 | AY.58 | 0.011797 |
N | 327 | S327L | tCg | tTg | 12 | 12 | AY.59 | 0.006356 |
N | 327 | S327L | tCg | tTg | 12 | 12 | B.1.1.214 | 0.000665 |
N | 327 | S327L | tCg | tTg | 12 | 12 | B.1.369 | 0.003423 |
N | 327 | S327L | tCg | tTg | 12 | 12 | B.1.8 | 0.023669 |
N | 327 | S327L | tCg | tTg | 11 | 11 | AY.98.1 | 0.000533 |
N | 327 | S327L | tCg | tTg | 11 | 11 | B.1.1.422 | 0.5 |
N | 327 | S327L | tCg | tTg | 10 | 10 | AY.35 | 0.00233 |
N | 327 | S327L | tCg | tTg | 10 | 10 | AY.84 | 0.004374 |
N | 327 | S327L | tCg | tTg | 10 | 10 | B.1.36.29 | 0.005173 |
N | 327 | S327L | tCg | tTg | 9 | 9 | AY.9.2 | 0.000331 |
N | 327 | S327L | tCg | tTg | 9 | 9 | B.1.177.21 | 0.000688 |
N | 327 | S327L | tCg | tTg | 9 | 9 | B.1.177.87 | 0.00655 |
N | 327 | S327L | tCg | tTg | 9 | 9 | B.1.336 | 0.021951 |
N | 327 | S327L | tCg | tTg | 9 | 9 | B.1.637 | 0.000658 |
N | 327 | S327L | tCg | tTg | 8 | 8 | A.27 | 0.013245 |
N | 327 | S327L | tCg | tTg | 8 | 8 | AY.32 | 0.00426 |
N | 327 | S327L | tCg | tTg | 8 | 8 | AY.46.6 | 0.000578 |
N | 327 | S327L | tCg | tTg | 8 | 8 | AY.68 | 0.00219 |
N | 327 | S327L | tCg | tTg | 8 | 8 | AY.99 | 0.008395 |
N | 327 | S327L | tCg | tTg | 8 | 8 | B.1.1.265 | 0.025237 |
N | 327 | S327L | tCg | tTg | 8 | 8 | B.1.177.17 | 0.006568 |
N | 327 | S327L | tCg | tTg | 8 | 8 | B.1.525 | 0.000905 |
N | 327 | S327L | tCg | tTg | 8 | 8 | B.1.582 | 0.003925 |
N | 327 | S327L | tCg | tTg | 7 | 7 | AY.14 | 0.000616 |
N | 327 | S327L | tCg | tTg | 7 | 7 | AY.75.1 | 0.001262 |
N | 327 | S327L | tCg | tTg | 7 | 7 | AY.91 | 0.005113 |
N | 327 | S327L | tCg | tTg | 7 | 7 | AY.95 | 0.005327 |
N | 327 | S327L | tCg | tTg | 7 | 7 | B.1.1.243 | 0.028571 |
N | 327 | S327L | tCg | tTg | 7 | 7 | B.1.177.60 | 0.001529 |
N | 327 | S327L | tCg | tTg | 7 | 7 | B.1.517 | 0.002989 |
N | 327 | S327L | tCg | tTg | 7 | 7 | B.1.609 | 0.003356 |
N | 327 | S327L | tCg | tTg | 7 | 7 | B.1.628 | 0.002467 |
N | 327 | S327L | tCg | tTg | 6 | 6 | AY.34 | 0.000582 |
N | 327 | S327L | tCg | tTg | 6 | 6 | B.1.1.216 | 0.005343 |
N | 327 | S327L | tCg | tTg | 5 | 6 | B.1.1.306 | 0.002192 |
N | 327 | S327L | tCG | tTA | 1 | 6 | B.1.1.306 | 0.000438 |
N | 327 | S327L | tCg | tTg | 6 | 6 | B.1.1.39 | 0.003058 |
N | 327 | S327L | tCg | tTg | 6 | 6 | B.1.177.11 | 0.010187 |
N | 327 | S327L | tCg | tTg | 6 | 6 | B.1.199 | 0.024793 |
N | 327 | S327L | tCg | tTg | 6 | 6 | B.1.564 | 0.002555 |
N | 327 | S327L | tCg | tTg | 6 | 6 | B.1.565 | 0.004862 |
N | 327 | S327L | tCg | tTg | 6 | 6 | B.1.617.1 | 0.000774 |
N | 327 | S327L | tCg | tTg | 6 | 6 | P.1.12 | 0.002904 |
N | 327 | S327L | tCg | tTg | 5 | 5 | AY.10 | 0.00265 |
N | 327 | S327L | tCg | tTg | 5 | 5 | AY.113 | 0.000712 |
N | 327 | S327L | tCg | tTg | 5 | 5 | AY.114 | 0.001156 |
N | 327 | S327L | tCg | tTg | 5 | 5 | AY.46.4 | 0.000823 |
N | 327 | S327L | tCg | tTg | 5 | 5 | AY.57 | 0.003281 |
N | 327 | S327L | tCg | tTg | 5 | 5 | AZ.2 | 0.004105 |
N | 327 | S327L | tCg | tTg | 5 | 5 | B | 0.000639 |
N | 327 | S327L | tCg | tTg | 5 | 5 | B.1.1.25 | 0.002843 |
N | 327 | S327L | tCg | tTg | 5 | 5 | B.1.1.333 | 0.005382 |
N | 327 | S327L | tCg | tTg | 5 | 5 | B.1.1.372 | 0.003444 |
N | 327 | S327L | tCg | tTg | 5 | 5 | B.1.206 | 0.004078 |
N | 327 | S327L | tCg | tTg | 5 | 5 | B.1.575 | 0.001517 |
N | 327 | S327L | tCG | tTA | 5 | 5 | S.1 | 0.024752 |
N | 327 | S327L | tCg | tTg | 4 | 4 | 0.222222 | |
N | 327 | S327L | tCg | tTg | 4 | 4 | AY.101 | 0.001962 |
N | 327 | S327L | tCg | tTg | 4 | 4 | AY.105 | 0.002572 |
N | 327 | S327L | tCg | tTg | 4 | 4 | AY.109 | 0.002959 |
N | 327 | S327L | tCg | tTg | 4 | 4 | AY.16 | 0.001519 |
N | 327 | S327L | tCg | tTg | 4 | 4 | B.1.1.277 | 0.003035 |
N | 327 | S327L | tCg | tTg | 4 | 4 | B.1.1.311 | 0.001433 |
N | 327 | S327L | tCg | tTg | 4 | 4 | B.1.1.316 | 0.0037 |
N | 327 | S327L | tCg | tTg | 4 | 4 | B.1.177.56 | 0.00267 |
N | 327 | S327L | tCg | tTg | 4 | 4 | B.1.240 | 0.000862 |
N | 327 | S327L | tCg | tTg | 4 | 4 | B.1.36.38 | 0.006568 |
N | 327 | S327L | tCg | tTg | 4 | 4 | B.1.466.2 | 0.001565 |
N | 327 | S327L | tCg | tTg | 4 | 4 | P.1.17 | 0.000647 |
N | 327 | S327L | tCg | tTg | 3 | 3 | A.1 | 0.000846 |
N | 327 | S327L | tCg | tTg | 3 | 3 | AY.100 | 0.000138 |
N | 327 | S327L | tCg | tTg | 3 | 3 | AY.116 | 0.00086 |
N | 327 | S327L | tCg | tTg | 3 | 3 | AY.33 | 0.0002 |
N | 327 | S327L | tCg | tTg | 3 | 3 | AY.36 | 0.000445 |
N | 327 | S327L | tCg | tTg | 3 | 3 | AY.4.5 | 0.000322 |
N | 327 | S327L | tCg | tTg | 3 | 3 | AY.74 | 0.000347 |
N | 327 | S327L | tCg | tTg | 3 | 3 | AY.86 | 0.00249 |
N | 327 | S327L | tCg | tTg | 3 | 3 | B.1.1.28 | 0.000934 |
N | 327 | S327L | tCg | tTg | 3 | 3 | B.1.1.284 | 0.000322 |
N | 327 | S327L | tCg | tTg | 3 | 3 | B.1.1.374 | 0.007126 |
N | 327 | S327L | tCg | tTg | 3 | 3 | B.1.160.14 | 0.006356 |
N | 327 | S327L | tCg | tTg | 3 | 3 | B.1.177.16 | 0.001993 |
N | 327 | S327L | tCg | tTg | 3 | 3 | B.1.177.86 | 0.00055 |
N | 327 | S327L | tCg | tTg | 3 | 3 | B.1.239 | 0.003663 |
N | 327 | S327L | tCg | tTg | 3 | 3 | B.1.36.10 | 0.014354 |
N | 327 | S327L | tCg | tTg | 3 | 3 | B.1.36.18 | 0.001261 |
N | 327 | S327L | tCg | tTg | 3 | 3 | B.1.36.8 | 0.003 |
N | 327 | S327L | tCg | tTg | 3 | 3 | B.1.390 | 0.031915 |
N | 327 | S327L | tCg | tTg | 3 | 3 | B.1.456 | 0.009804 |
N | 327 | S327L | tCg | tTg | 3 | 3 | B.1.489 | 0.130435 |
N | 327 | S327L | tCg | tTg | 3 | 3 | B.1.499 | 0.003151 |
N | 327 | S327L | tCg | tTg | 3 | 3 | C.36.3 | 0.001702 |
N | 327 | S327L | tCg | tTg | 3 | 3 | D.2 | 0.000225 |
N | 327 | S327L | tCg | tTg | 3 | 3 | P.3 | 0.004785 |
N | 327 | S327L | tCg | tTg | 3 | 3 | Q.4 | 0.001364 |
N | 327 | S327L | tCg | tTg | 3 | 3 | Q.8 | 0.000495 |
N | 327 | S327L | tCg | tTg | 2 | 2 | A.3 | 0.004193 |
N | 327 | S327L | tCg | tTg | 2 | 2 | AE.8 | 0.000978 |
N | 327 | S327L | tCg | tTg | 2 | 2 | AY.104 | 0.003968 |
N | 327 | S327L | tCg | tTg | 2 | 2 | AY.34.1 | 0.00102 |
N | 327 | S327L | tCg | tTg | 2 | 2 | AY.46.2 | 0.001271 |
N | 327 | S327L | tCg | tTg | 2 | 2 | AY.49 | 0.00639 |
N | 327 | S327L | tCg | tTg | 2 | 2 | AY.55 | 0.001835 |
N | 327 | S327L | tCg | tTg | 2 | 2 | AY.65 | 0.001066 |
N | 327 | S327L | tCg | tTg | 2 | 2 | AY.7 | 0.000392 |
N | 327 | S327L | tCg | tTg | 2 | 2 | AY.70 | 0.000417 |
N | 327 | S327L | tCg | tTg | 2 | 2 | AY.81 | 0.003984 |
N | 327 | S327L | tCg | tTg | 2 | 2 | AY.87 | 0.001665 |
N | 327 | S327L | tCg | tTg | 2 | 2 | AY.96 | 0.004149 |
N | 327 | S327L | tCg | tTg | 2 | 2 | B.1.1.1 | 0.000653 |
N | 327 | S327L | tCg | tTg | 2 | 2 | B.1.1.153 | 0.002191 |
N | 327 | S327L | tCg | tTg | 2 | 2 | B.1.1.157 | 0.001826 |
N | 327 | S327L | tCg | tTg | 2 | 2 | B.1.1.353 | 0.041667 |
N | 327 | S327L | tCg | tTg | 2 | 2 | B.1.1.388 | 0.090909 |
N | 327 | S327L | tCg | tTg | 2 | 2 | B.1.1.432 | 0.002532 |
N | 327 | S327L | tCg | tTg | 2 | 2 | B.1.1.525 | 0.010929 |
N | 327 | S327L | tCg | tTg | 2 | 2 | B.1.1.70 | 0.000682 |
N | 327 | S327L | tCg | tTg | 2 | 2 | B.1.177.10 | 0.001756 |
N | 327 | S327L | tCg | tTg | 2 | 2 | B.1.177.18 | 0.00232 |
N | 327 | S327L | tCg | tTg | 2 | 2 | B.1.177.46 | 0.001837 |
N | 327 | S327L | tCg | tTg | 2 | 2 | B.1.177.57 | 0.000562 |
N | 327 | S327L | tCg | tTg | 2 | 2 | B.1.258.11 | 0.000793 |
N | 327 | S327L | tCg | tTg | 2 | 2 | B.1.258.20 | 0.031746 |
N | 327 | S327L | tCg | tTg | 2 | 2 | B.1.258.22 | 0.005333 |
N | 327 | S327L | tCg | tTg | 2 | 2 | B.1.311 | 0.000549 |
N | 327 | S327L | tCg | tTg | 2 | 2 | B.1.351.5 | 0.001199 |
N | 327 | S327L | tCg | tTg | 2 | 2 | B.1.36.17 | 0.000988 |
N | 327 | S327L | tCg | tTg | 2 | 2 | B.1.375 | 0.001639 |
N | 327 | S327L | tCg | tTg | 2 | 2 | B.1.39 | 0.007812 |
N | 327 | S327L | tCg | tTg | 2 | 2 | B.1.413 | 0.008511 |
N | 327 | S327L | tCg | tTg | 2 | 2 | B.1.416 | 0.002538 |
N | 327 | S327L | tCg | tTg | 2 | 2 | B.1.561 | 0.000794 |
N | 327 | S327L | tCg | tTg | 2 | 2 | B.1.619.1 | 0.001283 |
N | 327 | S327L | tCg | tTg | 2 | 2 | B.1.623 | 0.001073 |
N | 327 | S327L | tCg | tTg | 2 | 2 | B.1.78 | 0.017094 |
N | 327 | S327L | tCg | tTg | 2 | 2 | B.40 | 0.000729 |
N | 327 | S327L | tCg | tTg | 2 | 2 | C.30 | 0.003454 |
N | 327 | S327L | tCg | tTg | 2 | 2 | C.36 | 0.001821 |
N | 327 | S327L | tCg | tTg | 2 | 2 | N.4 | 0.008511 |
N | 327 | S327L | tCg | tTg | 1 | 1 | A | 0.000387 |
N | 327 | S327L | tCg | tTg | 1 | 1 | A.2.5 | 0.000499 |
N | 327 | S327L | tCg | tTg | 1 | 1 | A.23.1 | 0.000704 |
N | 327 | S327L | tCg | tTg | 1 | 1 | A.6 | 0.005128 |
N | 327 | S327L | tCg | tTg | 1 | 1 | AD.2 | 0.000219 |
N | 327 | S327L | tCg | tTg | 1 | 1 | AE.1 | 0.011364 |
N | 327 | S327L | tCg | tTg | 1 | 1 | AE.5 | 0.018519 |
N | 327 | S327L | tCg | tTg | 1 | 1 | AM.4 | 0.003571 |
N | 327 | S327L | tCg | tTg | 1 | 1 | AU.3 | 0.00211 |
N | 327 | S327L | tCg | tTg | 1 | 1 | AW.1 | 0.003049 |
N | 327 | S327L | tCg | tTg | 1 | 1 | AY.110 | 0.000113 |
N | 327 | S327L | tCg | tTg | 1 | 1 | AY.12 | 0.000316 |
N | 327 | S327L | tCg | tTg | 1 | 1 | AY.120.2.1 | 0.000498 |
N | 327 | S327L | tCg | tTg | 1 | 1 | AY.19 | 0.00114 |
N | 327 | S327L | tCg | tTg | 1 | 1 | AY.2 | 0.000356 |
N | 327 | S327L | tCg | tTg | 1 | 1 | AY.22 | 0.002092 |
N | 327 | S327L | tCg | tTg | 1 | 1 | AY.24 | 0.000431 |
N | 327 | S327L | tCg | tTg | 1 | 1 | AY.28 | 0.00189 |
N | 327 | S327L | tCg | tTg | 1 | 1 | AY.30 | 0.000396 |
N | 327 | S327L | tCg | tTg | 1 | 1 | AY.37 | 0.000316 |
N | 327 | S327L | tCg | tTg | 1 | 1 | AY.38 | 0.000499 |
N | 327 | S327L | tCg | tTg | 1 | 1 | AY.4.3 | 0.000842 |
N | 327 | S327L | tCg | tTg | 1 | 1 | AY.46.1 | 0.001027 |
N | 327 | S327L | tCg | tTg | 1 | 1 | AY.50 | 0.000799 |
N | 327 | S327L | tCg | tTg | 1 | 1 | AY.53 | 0.000288 |
N | 327 | S327L | tCg | tTg | 1 | 1 | AY.60 | 0.000938 |
N | 327 | S327L | tCg | tTg | 1 | 1 | AY.61 | 0.000105 |
N | 327 | S327L | tCg | tTg | 1 | 1 | AY.62 | 0.000436 |
N | 327 | S327L | tCg | tTg | 1 | 1 | AY.71 | 0.000475 |
N | 327 | S327L | tCg | tTg | 1 | 1 | AY.82 | 0.001357 |
N | 327 | S327L | tCg | tTg | 1 | 1 | AY.9 | 0.000068 |
N | 327 | S327L | tCg | tTg | 1 | 1 | AY.9.1 | 0.000084 |
N | 327 | S327L | tCg | tTg | 1 | 1 | AY.9.2.1 | 0.001976 |
N | 327 | S327L | tCg | tTg | 1 | 1 | B.1.1.10 | 0.001115 |
N | 327 | S327L | tCg | tTg | 1 | 1 | B.1.1.128 | 0.007092 |
N | 327 | S327L | tCg | tTg | 1 | 1 | B.1.1.141 | 0.002012 |
N | 327 | S327L | tCg | tTg | 1 | 1 | B.1.1.176 | 0.000439 |
N | 327 | S327L | tCg | tTg | 1 | 1 | B.1.1.196 | 0.005714 |
N | 327 | S327L | tCg | tTg | 1 | 1 | B.1.1.220 | 0.001859 |
N | 327 | S327L | tCg | tTg | 1 | 1 | B.1.1.241 | 0.00207 |
N | 327 | S327L | tCg | tTg | 1 | 1 | B.1.1.255 | 0.00303 |
N | 327 | S327L | tCg | tTg | 1 | 1 | B.1.1.268 | 0.014925 |
N | 327 | S327L | tCg | tTg | 1 | 1 | B.1.1.27 | 0.00565 |
N | 327 | S327L | tCg | tTg | 1 | 1 | B.1.1.274 | 0.005051 |
N | 327 | S327L | tCg | tTg | 1 | 1 | B.1.1.289 | 0.002083 |
N | 327 | S327L | tCg | tTg | 1 | 1 | B.1.1.294 | 0.001266 |
N | 327 | S327L | tCg | tTg | 1 | 1 | B.1.1.318 | 0.000302 |
N | 327 | S327L | tCg | tTg | 1 | 1 | B.1.1.33 | 0.000421 |
N | 327 | S327L | tCg | tTg | 1 | 1 | B.1.1.348 | 0.000796 |
N | 327 | S327L | tCg | tTg | 1 | 1 | B.1.1.354 | 0.004386 |
N | 327 | S327L | tCg | tTg | 1 | 1 | B.1.1.37 | 0.000193 |
N | 327 | S327L | tCg | tTg | 1 | 1 | B.1.1.402 | 0.011111 |
N | 327 | S327L | tCg | tTg | 1 | 1 | B.1.1.416 | 0.000905 |
N | 327 | S327L | tCg | tTg | 1 | 1 | B.1.1.420 | 0.001006 |
N | 327 | S327L | tCg | tTg | 1 | 1 | B.1.1.434 | 0.000349 |
N | 327 | S327L | tCg | tTg | 1 | 1 | B.1.1.461 | 0.012048 |
N | 327 | S327L | tCg | tTg | 1 | 1 | B.1.1.48 | 0.002874 |
N | 327 | S327L | tCg | tTg | 1 | 1 | B.1.1.50 | 0.000679 |
N | 327 | S327L | tCg | tTg | 1 | 1 | B.1.1.515 | 0.02 |
N | 327 | S327L | tCg | tTg | 1 | 1 | B.1.1.52 | 0.012195 |
N | 327 | S327L | tCg | tTg | 1 | 1 | B.1.1.521 | 0.005348 |
N | 327 | S327L | tCg | tTg | 1 | 1 | B.1.1.63 | 0.000386 |
N | 327 | S327L | tCg | tTg | 1 | 1 | B.1.108 | 0.005814 |
N | 327 | S327L | tCg | tTg | 1 | 1 | B.1.110.3 | 0.000718 |
N | 327 | S327L | tCg | tTg | 1 | 1 | B.1.111 | 0.001175 |
N | 327 | S327L | tCg | tTg | 1 | 1 | B.1.126 | 0.001276 |
N | 327 | S327L | tCg | tTg | 1 | 1 | B.1.13 | 0.002375 |
N | 327 | S327L | tCg | tTg | 1 | 1 | B.1.157 | 0.002985 |
N | 327 | S327L | tCg | tTg | 1 | 1 | B.1.160.26 | 0.002421 |
N | 327 | S327L | tCg | tTg | 1 | 1 | B.1.160.30 | 0.002976 |
N | 327 | S327L | tCg | tTg | 1 | 1 | B.1.160.8 | 0.001289 |
N | 327 | S327L | tCg | tTg | 1 | 1 | B.1.177.33 | 0.001645 |
N | 327 | S327L | tCg | tTg | 1 | 1 | B.1.177.58 | 0.001332 |
N | 327 | S327L | tCg | tTg | 1 | 1 | B.1.177.62 | 0.001192 |
N | 327 | S327L | tCg | tTg | 1 | 1 | B.1.177.65 | 0.000665 |
N | 327 | S327L | tCg | tTg | 1 | 1 | B.1.177.7 | 0.000165 |
N | 327 | S327L | tCg | tTg | 1 | 1 | B.1.178 | 0.02381 |
N | 327 | S327L | tCg | tTg | 1 | 1 | B.1.182 | 0.007246 |
N | 327 | S327L | tCg | tTg | 1 | 1 | B.1.214.2 | 0.0006 |
N | 327 | S327L | tCg | tTg | 1 | 1 | B.1.221.3 | 0.000833 |
N | 327 | S327L | tCg | tTg | 1 | 1 | B.1.232 | 0.000537 |
N | 327 | S327L | tCg | tTg | 1 | 1 | B.1.237 | 0.004975 |
N | 327 | S327L | tCg | tTg | 1 | 1 | B.1.250 | 0.014493 |
N | 327 | S327L | tCg | tTg | 1 | 1 | B.1.258.3 | 0.001675 |
N | 327 | S327L | tCg | tTg | 1 | 1 | B.1.264 | 0.012346 |
N | 327 | S327L | tCg | tTg | 1 | 1 | B.1.279 | 0.000514 |
N | 327 | S327L | tCg | tTg | 1 | 1 | B.1.338 | 0.008621 |
N | 327 | S327L | tCg | tTg | 1 | 1 | B.1.340 | 0.004292 |
N | 327 | S327L | tCg | tTg | 1 | 1 | B.1.346 | 0.001311 |
N | 327 | S327L | tCg | tTg | 1 | 1 | B.1.349 | 0.000715 |
N | 327 | S327L | tCg | tTg | 1 | 1 | B.1.36.36 | 0.000602 |
N | 327 | S327L | tCg | tTg | 1 | 1 | B.1.36.9 | 0.003215 |
N | 327 | S327L | tCg | tTg | 1 | 1 | B.1.367 | 0.000792 |
N | 327 | S327L | tCg | tTg | 1 | 1 | B.1.397 | 0.004854 |
N | 327 | S327L | tCg | tTg | 1 | 1 | B.1.398 | 0.002976 |
N | 327 | S327L | tCg | tTg | 1 | 1 | B.1.408 | 0.00369 |
N | 327 | S327L | tCg | tTg | 1 | 1 | B.1.409 | 0.000781 |
N | 327 | S327L | tCg | tTg | 1 | 1 | B.1.416.1 | 0.001563 |
N | 327 | S327L | tCg | tTg | 1 | 1 | B.1.422 | 0.000812 |
N | 327 | S327L | tCg | tTg | 1 | 1 | B.1.429.1 | 0.012048 |
N | 327 | S327L | tCg | tTg | 1 | 1 | B.1.436 | 0.001029 |
N | 327 | S327L | tCg | tTg | 1 | 1 | B.1.459 | 0.004082 |
N | 327 | S327L | tCg | tTg | 1 | 1 | B.1.467 | 0.04 |
N | 327 | S327L | tCg | tTg | 1 | 1 | B.1.473 | 0.019231 |
N | 327 | S327L | tCg | tTg | 1 | 1 | B.1.480 | 0.002488 |
N | 327 | S327L | tCg | tTg | 1 | 1 | B.1.505 | 0.004386 |
N | 327 | S327L | tCg | tTg | 1 | 1 | B.1.523 | 0.002451 |
N | 327 | S327L | tCg | tTg | 1 | 1 | B.1.527 | 0.003704 |
N | 327 | S327L | tCg | tTg | 1 | 1 | B.1.551 | 0.00129 |
N | 327 | S327L | tCg | tTg | 1 | 1 | B.1.568 | 0.001111 |
N | 327 | S327L | tCg | tTg | 1 | 1 | B.1.577 | 0.000687 |
N | 327 | S327L | tCg | tTg | 1 | 1 | B.1.617.3 | 0.002985 |
N | 327 | S327L | tCg | tTg | 1 | 1 | B.1.88.1 | 0.004808 |
N | 327 | S327L | tCg | tTg | 1 | 1 | B.6 | 0.00091 |
N | 327 | S327L | tCg | tTg | 1 | 1 | B.6.1 | 0.026316 |
N | 327 | S327L | tCg | tTg | 1 | 1 | C.18 | 0.002591 |
N | 327 | S327L | tCg | tTg | 1 | 1 | C.26 | 0.007353 |
N | 327 | S327L | tCg | tTg | 1 | 1 | C.35 | 0.000774 |
N | 327 | S327L | tCg | tTg | 1 | 1 | C.4 | 0.01 |
N | 327 | S327L | tCg | tTg | 1 | 1 | N.5 | 0.001767 |
N | 327 | S327L | tCg | tTg | 1 | 1 | P.1.17.1 | 0.000875 |
N | 327 | S327L | tCg | tTg | 1 | 1 | P.1.2 | 0.001156 |
N | 327 | S327L | tCg | tTg | 1 | 1 | P.1.6 | 0.001946 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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