CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : Mut = S2Y

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N2S2YnonsyntCttAt10993109760.99845428277-28279
N2S2YnonsyntCTtAC10993170.0015464428277-28279

Details of the mutation S2Y within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N2S2YtCttAt1097610993All0.002099
N2S2YtCTtAC1710993All0.000003
N2S2YtCttAt84918493B.1.5250.960846
N2S2YtCTtAC28493B.1.5250.000226
N2S2YtCttAt11911191B.1.1.3480.948248
N2S2YtCttAt617617B.1.177.810.116812
N2S2YtCttAt191191A.23.10.134507
N2S2YtCttAt155155B.1.10.002812
N2S2YtCttAt6777P.10.001056
N2S2YtCTtAC1077P.10.000158
N2S2YtCttAt7070B.10.000641
N2S2YtCttAt2525B.1.1770.000329
N2S2YtCttAt2020B.1.20.000176
N2S2YtCttAt1414AY.40.000022
N2S2YtCttAt1111B.1.1.3070.027848
N2S2YtCttAt99B.1.1.70.000008
N2S2YtCttAt77AY.1030.000043
N2S2YtCttAt77B.1.1.10.002287
N2S2YtCttAt66B0.000767
N2S2YtCttAt66P.1.40.005859
N2S2YtCttAt55B.1.177.500.023474
N2S2YtCttAt44B.1.3510.000119
N2S2YtCttAt33AY.620.001307
N2S2YtCttAt33B.1.1.1800.032258
N2S2YtCttAt33B.1.1.2690.00406
N2S2YtCttAt33B.1.1.3690.001339
N2S2YtCttAt33B.1.1.3720.002066
N2S2YtCttAt33B.1.360.000438
N2S2YtCttAt33C.370.000348
N2S2YtCttAt23P.1.150.000465
N2S2YtCTtAC13P.1.150.000232
N2S2YtCttAt33P.1.20.003468
N2S2YtCttAt22B.1.1.1740.006757
N2S2YtCttAt22B.1.5330.019231
N2S2YtCttAt22B.1.5960.000174
N2S2YtCttAt22B.1.6090.000959
N2S2YtCttAt22C.160.002121
N2S2YtCttAt11AY.1000.000046
N2S2YtCttAt11AY.1190.000035
N2S2YtCttAt11AY.30.00001
N2S2YtCttAt11AY.360.000148
N2S2YtCttAt11AY.370.000316
N2S2YtCttAt11B.1.1.100.001115
N2S2YtCttAt11B.1.1.1710.003676
N2S2YtCttAt11B.1.1.1980.001468
N2S2YtCttAt11B.1.1.2200.001859
N2S2YtCttAt11B.1.1.2220.000204
N2S2YtCttAt11B.1.1.280.000311
N2S2YtCttAt11B.1.1.3180.000302
N2S2YtCttAt11B.1.1.3260.001761
N2S2YtCttAt11B.1.1.3980.003226
N2S2YtCttAt11B.1.1.4160.000905
N2S2YtCttAt11B.1.1.4420.018519
N2S2YtCttAt11B.1.1.4620.008621
N2S2YtCttAt11B.1.1.500.000679
N2S2YtCttAt11B.1.1.5190.00004
N2S2YtCttAt11B.1.1.630.000386
N2S2YtCttAt11B.1.1.890.006061
N2S2YtCttAt11B.1.1.990.02381
N2S2YtCttAt11B.1.160.320.004292
N2S2YtCttAt11B.1.1620.005025
N2S2YtCttAt11B.1.177.70.000165
N2S2YtCttAt11B.1.2210.000071
N2S2YtCttAt11B.1.230.006061
N2S2YtCttAt11B.1.3110.000275
N2S2YtCttAt11B.1.351.30.000876
N2S2YtCttAt11B.1.3750.00082
N2S2YtCttAt11B.1.3960.000706
N2S2YtCttAt11B.1.4390.005917
N2S2YtCttAt11B.1.466.20.000391
N2S2YtCttAt11B.1.4700.001404
N2S2YtCTtAC11B.1.5240.001406
N2S2YtCttAt11B.1.5260.000024
N2S2YtCttAt11B.1.5350.028571
N2S2YtCttAt11B.1.5970.00463
N2S2YtCttAt11B.1.617.20.000004
N2S2YtCttAt11B.550.00295
N2S2YtCttAt11C.350.000774
N2S2YtCttAt11C.400.027778
N2S2YtCttAt11P.1.120.000484
N2S2YtCTtAC11P.1.130.000898
N2S2YtCttAt11P.1.160.000374
N2S2YtCTtAC11P.1.170.000162
N2S2YtCTtAC11P.1.70.000319
N2S2YtCttAt11P.20.000187