CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : Mut = S235S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N235S235SsyntcTtcC6944820.69452428976-28978
N235S235SsyntcTtcA6941690.24351628976-28978
N235S235SsyntcTtcG694420.060518728976-28978
N235S235SsynTCtAGt69410.0014409228976-28978

Details of the mutation S235S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N235S235StcTtcC482694All0.000092
N235S235StcTtcA169694All0.000032
N235S235StcTtcG42694All0.000008
N235S235STCtAGt1694All0
N235S235StcTtcC143147AY.40.000223
N235S235StcTtcA4147AY.40.000006
N235S235StcTtcC8888AY.50.001817
N235S235StcTtcA7171B.1.6210.006285
N235S235StcTtcC7070B.1.6100.248227
N235S235StcTtcG2842AY.440.00017
N235S235StcTtcC1442AY.440.000085
N235S235StcTtcC2629B.1.617.20.000098
N235S235StcTtcG229B.1.617.20.000008
N235S235StcTtcA129B.1.617.20.000004
N235S235StcTtcA2828B.1.1110.032902
N235S235StcTtcC2020AY.360.002964
N235S235StcTtcC1820AY.430.00008
N235S235StcTtcG120AY.430.000004
N235S235StcTtcA120AY.430.000004
N235S235StcTtcC2020B.1.1.390.010194
N235S235StcTtcC1515AY.390.000371
N235S235StcTtcC1515B.1.20.000132
N235S235StcTtcA1111AY.39.10.000436
N235S235StcTtcA99AY.9.10.000754
N235S235StcTtcA88AY.250.000048
N235S235StcTtcC67B.10.000055
N235S235StcTtcA17B.10.000009
N235S235StcTtcA77B.1.360.001021
N235S235StcTtcC66AY.1200.000223
N235S235StcTtcC55AY.200.000194
N235S235StcTtcA35B.1.10.000054
N235S235StcTtcC25B.1.10.000036
N235S235StcTtcC44AY.260.000113
N235S235StcTtcC44B.1.1.2140.000222
N235S235StcTtcC44B.1.3510.000119
N235S235StcTtcA23AY.30.00002
N235S235STCtAGt13AY.30.00001
N235S235StcTtcC33B.1.1.5190.000119
N235S235StcTtcC23B.1.2210.000142
N235S235StcTtcG13B.1.2210.000071
N235S235StcTtcA33B.1.36.290.001552
N235S235StcTtcA33B.1.4030.009804
N235S235StcTtcA33B.1.4090.002344
N235S235StcTtcG22AY.450.000243
N235S235StcTtcC12B.1.1770.000013
N235S235StcTtcG12B.1.1770.000013
N235S235StcTtcA22B.1.4700.002809
N235S235StcTtcA22C.370.000232
N235S235StcTtcC22P.1.140.000096
N235S235StcTtcA12P.1.150.000232
N235S235StcTtcC12P.1.150.000232
N235S235StcTtcC11AY.1020.000027
N235S235StcTtcC11AY.1170.000085
N235S235StcTtcC11AY.1180.000063
N235S235StcTtcA11AY.350.000233
N235S235StcTtcG11AY.490.003195
N235S235StcTtcC11AY.540.000095
N235S235StcTtcC11AY.590.00053
N235S235StcTtcC11AY.610.000105
N235S235StcTtcG11AY.690.000187
N235S235StcTtcG11AY.850.000427
N235S235StcTtcC11B.1.1.1700.001247
N235S235StcTtcA11B.1.1.280.000311
N235S235StcTtcC11B.1.1.70.000001
N235S235StcTtcG11B.1.177.210.000076
N235S235StcTtcC11B.1.177.670.007634
N235S235StcTtcA11B.1.177.810.000189
N235S235StcTtcA11B.1.2340.000132
N235S235StcTtcG11B.1.3290.000608
N235S235StcTtcC11B.1.36.10.00114
N235S235StcTtcA11B.1.4290.000024
N235S235StcTtcG11B.1.4590.004082
N235S235StcTtcA11B.1.4620.007246
N235S235StcTtcG11B.1.5250.000113
N235S235StcTtcA11B.1.5260.000024
N235S235StcTtcC11B.1.5960.000087
N235S235StcTtcA11B.1.6230.000536
N235S235StcTtcC11B.1.6370.000073
N235S235StcTtcC11C.37.10.002618
N235S235StcTtcA11P.10.000016

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.