CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : Mut = S206F

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N206S206FnonsyntCttTt567056680.99964728889-28891
N206S206FnonsyntCTtTC567020.00035273428889-28891

Details of the mutation S206F within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N206S206FtCttTt56685670All0.001084
N206S206FtCTtTC25670All0
N206S206FtCttTt23172317B.1.5170.989325
N206S206FtCttTt972972B.1.4361
N206S206FtCttTt446446B.1.3240.715891
N206S206FtCttTt310310B.1.617.20.001167
N206S206FtCttTt218219B.10.001997
N206S206FtCTtTC1219B.10.000009
N206S206FtCttTt204204AY.40.000318
N206S206FtCttTt189189B.1.517.10.994737
N206S206FtCttTt8484AY.1030.000522
N206S206FtCttTt7676B.1.10.001379
N206S206FtCttTt6969AY.260.001953
N206S206FtCttTt5252AY.430.00023
N206S206FtCttTt5252AY.440.000317
N206S206FtCttTt4343AY.230.002999
N206S206FtCttTt4040AY.30.000398
N206S206FtCttTt3434B.1.1.70.00003
N206S206FtCttTt3131AY.250.000186
N206S206FtCttTt2727AY.610.002829
N206S206FtCttTt2525B.1.20.00022
N206S206FtCttTt1919AY.390.00047
N206S206FtCttTt1717AY.520.013844
N206S206FtCttTt1616AY.1130.002278
N206S206FtCttTt1616AY.1180.001002
N206S206FtCttTt1616AY.1190.000565
N206S206FtCttTt1515AY.1000.00069
N206S206FtCttTt1414AY.290.000221
N206S206FtCttTt1313AY.200.000505
N206S206FtCttTt1212AY.740.001388
N206S206FtCttTt1111AY.1170.00093
N206S206FtCttTt1111AY.750.000616
N206S206FtCttTt1010AY.470.000311
N206S206FtCttTt99AY.1200.000335
N206S206FtCttTt88AY.140.000704
N206S206FtCttTt88AY.570.005249
N206S206FtCttTt88AY.60.000329
N206S206FtCttTt77AY.1020.000186
N206S206FtCttTt77AY.950.005327
N206S206FtCttTt77AY.980.000553
N206S206FtCttTt77B.1.370.102941
N206S206FtCttTt66AY.330.000401
N206S206FtCttTt66AY.4.20.00013
N206S206FtCttTt66AY.420.000241
N206S206FtCttTt66AY.640.003571
N206S206FtCttTt66AZ.20.004926
N206S206FtCttTt66B.1.1.2140.000333
N206S206FtCttTt66B.1.1110.007051
N206S206FtCttTt66B.1.617.10.000774
N206S206FtCttTt55AY.130.000805
N206S206FtCttTt55AY.270.000324
N206S206FtCttTt55AY.3.10.000426
N206S206FtCttTt55AY.50.000103
N206S206FtCttTt55AY.620.002179
N206S206FtCttTt45AY.9.20.000147
N206S206FtCTtTC15AY.9.20.000037
N206S206FtCttTt55B.1.1.5190.000199
N206S206FtCttTt55B.1.5960.000436
N206S206FtCttTt55P.1.120.00242
N206S206FtCttTt44AY.16.10.00188
N206S206FtCttTt44AY.350.000932
N206S206FtCttTt44AY.90.00027
N206S206FtCttTt44AY.98.10.000194
N206S206FtCttTt44B.1.1.1530.004381
N206S206FtCttTt44B.1.1.630.001543
N206S206FtCttTt44B.1.6090.001918
N206S206FtCttTt33AY.1140.000693
N206S206FtCttTt33AY.1210.000406
N206S206FtCttTt33AY.240.001293
N206S206FtCttTt33AY.450.000365
N206S206FtCttTt33B.1.1.3180.000905
N206S206FtCttTt33B.1.3780.020548
N206S206FtCttTt33B.1.4730.057692
N206S206FtCttTt22A.10.000564
N206S206FtCttTt22AD.20.000438
N206S206FtCttTt22AY.120.000632
N206S206FtCttTt22AY.150.004444
N206S206FtCttTt22AY.20.000712
N206S206FtCttTt22AY.310.037037
N206S206FtCttTt22AY.360.000296
N206S206FtCttTt22AY.370.000632
N206S206FtCttTt22AY.4.2.10.000298
N206S206FtCttTt22AY.4.50.000215
N206S206FtCttTt22AY.460.000208
N206S206FtCttTt22AY.46.10.002053
N206S206FtCttTt22AY.510.001818
N206S206FtCttTt22AY.550.001835
N206S206FtCttTt22AY.630.000774
N206S206FtCttTt22AY.690.000373
N206S206FtCttTt22AY.75.10.000361
N206S206FtCttTt22AY.790.002421
N206S206FtCttTt22AY.840.000875
N206S206FtCttTt22AY.990.002099
N206S206FtCttTt22B.1.1.2270.008696
N206S206FtCttTt22B.1.1.3530.041667
N206S206FtCttTt22B.1.1.4480.004065
N206S206FtCttTt22B.1.1.4640.002946
N206S206FtCttTt22B.1.5800.00813
N206S206FtCttTt22B.1.5930.021739
N206S206FtCttTt22B.1.619.10.001283
N206S206FtCttTt22Q.80.00033
N206S206FtCttTt110.055556
N206S206FtCttTt11A.210.00277
N206S206FtCttTt11AY.116.10.000311
N206S206FtCttTt11AY.160.00038
N206S206FtCttTt11AY.280.00189
N206S206FtCttTt11AY.39.10.00004
N206S206FtCttTt11AY.46.20.000635
N206S206FtCttTt11AY.46.40.000165
N206S206FtCttTt11AY.490.003195
N206S206FtCttTt11AY.680.000274
N206S206FtCttTt11AY.7.10.000113
N206S206FtCttTt11AY.710.000475
N206S206FtCttTt11AY.830.001724
N206S206FtCttTt11AY.850.000427
N206S206FtCttTt11AY.860.00083
N206S206FtCttTt11AY.870.000833
N206S206FtCttTt11AY.920.000287
N206S206FtCttTt11AY.940.000443
N206S206FtCttTt11AY.99.20.000092
N206S206FtCttTt11B0.000128
N206S206FtCttTt11B.1.1.1890.001513
N206S206FtCttTt11B.1.1.250.000569
N206S206FtCttTt11B.1.1.2770.000759
N206S206FtCttTt11B.1.1.280.000311
N206S206FtCttTt11B.1.1.2840.000107
N206S206FtCttTt11B.1.1.310.066667
N206S206FtCttTt11B.1.1.3170.000412
N206S206FtCttTt11B.1.1.4190.007407
N206S206FtCttTt11B.1.1430.021277
N206S206FtCttTt11B.1.160.300.002976
N206S206FtCttTt11B.1.177.580.001332
N206S206FtCttTt11B.1.177.810.000189
N206S206FtCttTt11B.1.177.830.001481
N206S206FtCttTt11B.1.2180.005155
N206S206FtCttTt11B.1.2210.000071
N206S206FtCttTt11B.1.3110.000275
N206S206FtCttTt11B.1.3200.001245
N206S206FtCttTt11B.1.36.170.000494
N206S206FtCttTt11B.1.3620.001541
N206S206FtCttTt11B.1.3690.000285
N206S206FtCttTt11B.1.4650.003802
N206S206FtCttTt11B.1.5090.000866
N206S206FtCttTt11B.1.5260.000024
N206S206FtCttTt11B.1.5330.009615
N206S206FtCttTt11B.1.5640.000426
N206S206FtCttTt11B.1.6120.002653
N206S206FtCttTt11B.4.10.018868
N206S206FtCttTt11B.400.000364
N206S206FtCttTt11D.20.000075
N206S206FtCttTt11P.10.000016
N206S206FtCttTt11P.1.160.000374

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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