CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : Mut = S202S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N202S202SsynAGtTCt1274191270380.9970128877-28879
N202S202SsynagTagC1274193570.0028017828877-28879
N202S202SsynAGTTCC127419220.00017265928877-28879
N202S202SsynAGTTCA12741910.0000078481228877-28879
N202S202SsynAGTTCG12741910.0000078481228877-28879

Details of the mutation S202S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N202S202SAGtTCt127038127419All0.024298
N202S202SagTagC357127419All0.000068
N202S202SAGTTCC22127419All0.000004
N202S202SAGTTCG1127419All0
N202S202SAGTTCA1127419All0
N202S202SAGtTCt6064860660P.10.955448
N202S202SAGTTCC1260660P.10.000189
N202S202SAGtTCt2080120803P.1.140.994312
N202S202SAGTTCC220803P.1.140.000096
N202S202SAGtTCt1502615044B.1.1.70.013452
N202S202SagTagC1415044B.1.1.70.000013
N202S202SAGTTCC415044B.1.1.70.000004
N202S202SAGtTCt53165316P.1.170.859916
N202S202SAGtTCt41324135P.1.150.960037
N202S202SAGTTCC24135P.1.150.000465
N202S202SAGTTCA14135P.1.150.000232
N202S202SAGtTCt35873587P.1.100.966586
N202S202SAGtTCt30693070P.1.70.979885
N202S202SAGTTCC13070P.1.70.000319
N202S202SAGtTCt25232523P.1.160.943883
N202S202SAGtTCt21432144P.1.10.68075
N202S202SAGTTCC12144P.1.10.000318
N202S202SAGtTCt13281329P.1.120.642788
N202S202SAGTTCG11329P.1.120.000484
N202S202SAGtTCt10861086P.1.130.975741
N202S202SAGtTCt10271027P.1.17.10.898513
N202S202SAGtTCt10231023P.1.40.999023
N202S202SAGtTCt856856P.1.20.989595
N202S202SAGtTCt762763B.1.1.5190.03026
N202S202SagTagC1763B.1.1.5190.00004
N202S202SAGtTCt514514P.1.61
N202S202SAGtTCt456458B.1.10.008272
N202S202SagTagC2458B.1.10.000036
N202S202SAGtTCt272272B.1.1.2140.015084
N202S202SAGtTCt238238C.37.10.623037
N202S202SAGtTCt208208P.1.91
N202S202SAGtTCt206206P.1.80.985646
N202S202SAGtTCt185185Q.80.030508
N202S202SAGtTCt168168B.1.1.5280.807692
N202S202SagTagC117117B.1.5640.04983
N202S202SAGtTCt114114B.1.1.3221
N202S202SagTagC96105AY.250.000577
N202S202SAGtTCt9105AY.250.000054
N202S202SAGtTCt100100P.1.10.10.813008
N202S202SAGtTCt9898P.1.111
N202S202SAGtTCt8285B.10.000751
N202S202SagTagC385B.10.000027
N202S202SAGtTCt6060Q.10.00758
N202S202SAGtTCt5959B.1.1.4160.053394
N202S202SAGtTCt4747AY.4.2.10.007002
N202S202SAGtTCt4141B.1.1.2220.008364
N202S202SAGtTCt4040B.1.1.390.020387
N202S202SAGtTCt3737Q.30.005366
N202S202SAGtTCt3434B.1.1.2890.070833
N202S202SAGtTCt3233B.1.1.280.00996
N202S202SagTagC133B.1.1.280.000311
N202S202SAGtTCt3333B.1.1.4080.916667
N202S202SAGtTCt3333C.370.00383
N202S202SAGtTCt3131C.160.032874
N202S202SAGtTCt2929P.1.31
N202S202SagTagC2828B.1.1.4280.264151
N202S202SAGtTCt2828B.1.1.4340.009759
N202S202SAGtTCt2121P.1.10.20.875
N202S202SAGtTCt1420AY.440.000085
N202S202SagTagC620AY.440.000037
N202S202SAGtTCt2020R.10.0018
N202S202SAGtTCt1919B.1.1.2770.014416
N202S202SAGtTCt1919B.1.1.3241
N202S202SAGtTCt1117B.1.617.20.000041
N202S202SagTagC617B.1.617.20.000023
N202S202SagTagC1516AY.40.000023
N202S202SAGtTCt116AY.40.000002
N202S202SAGtTCt1414B.1.1.1610.04947
N202S202SAGtTCt1014D.20.00075
N202S202SagTagC414D.20.0003
N202S202SAGtTCt1313P.1.51
N202S202SAGtTCt1212B.1.1.3180.003621
N202S202SAGtTCt1212P.20.00224
N202S202SAGtTCt1111AY.1010.005395
N202S202SAGtTCt1111B.1.1.2530.027569
N202S202SAGtTCt1111B.1.1.630.004244
N202S202SAGtTCt1111B.1.1.740.047414
N202S202SAGtTCt911B.1.6210.000797
N202S202SagTagC211B.1.6210.000177
N202S202SAGtTCt1010AY.340.00097
N202S202SAGtTCt1010B.1.1.2160.008905
N202S202SAGtTCt99AE.80.004401
N202S202SAGtTCt99B.1.1.330.003788
N202S202SAGtTCt99B.1.1.40.026786
N202S202SagTagC79B.1.20.000062
N202S202SAGtTCt29B.1.20.000018
N202S202SagTagC58AY.30.00005
N202S202SAGtTCt38AY.30.00003
N202S202SAGtTCt88B.1.1.5070.069565
N202S202SAGtTCt77B.1.1.2070.008274
N202S202SAGtTCt77B.1.1.250.00398
N202S202SAGtTCt77B.1.1.2650.022082
N202S202SAGtTCt77B.1.1.3150.059322
N202S202SAGtTCt77B.1.1.3170.002882
N202S202SAGtTCt66AD.20.001314
N202S202SAGtTCt46AY.1020.000106
N202S202SagTagC26AY.1020.000053
N202S202SAGtTCt66AZ.20.004926
N202S202SAGtTCt66B.1.1.10.00196
N202S202SAGtTCt66B.1.1.1760.002636
N202S202SAGtTCt66B.1.1.340.078947
N202S202SAGtTCt66B.1.1.3480.004777
N202S202SAGtTCt66B.1.1.560.107143
N202S202SagTagC46B.1.4290.000094
N202S202SAGtTCt26B.1.4290.000047
N202S202SAGtTCt66C.36.10.024896
N202S202SAGtTCt55B.1.1.2940.006329
N202S202SAGtTCt55B.1.1.3110.001791
N202S202SAGtTCt55B.1.1.3160.004625
N202S202SAGtTCt55B.1.1.370.000964
N202S202SAGtTCt55B.1.5260.000118
N202S202SagTagC34AY.430.000013
N202S202SAGtTCt14AY.430.000004
N202S202SAGtTCt44B.1.1.1920.009238
N202S202SAGtTCt44B.1.1.2840.00043
N202S202SAGtTCt44B.1.1.3270.4
N202S202SAGtTCt44B.1.1.4090.011331
N202S202SagTagC44B.1.1600.000125
N202S202SagTagC44B.1.3690.001141
N202S202SAGtTCt44C.380.032258
N202S202SAGtTCt33AY.1030.000019
N202S202SAGtTCt33AZ.40.010067
N202S202SAGtTCt33B.1.1.2200.005576
N202S202SAGtTCt33B.1.1.3120.005736
N202S202SAGtTCt33B.1.1.3510.00838
N202S202SAGtTCt33B.1.1.3860.2
N202S202SAGtTCt33B.1.1.4290.013825
N202S202SAGtTCt33B.1.1.4860.004732
N202S202SAGtTCt33B.1.1.510.005155
N202S202SAGtTCt33B.1.1.5230.004687
N202S202SagTagC23B.1.1770.000026
N202S202SAGtTCt13B.1.1770.000013
N202S202SAGtTCt33B.1.3110.000824
N202S202SagTagC33B.1.360.000438
N202S202SAGtTCt33B.1.5330.028846
N202S202SAGtTCt33C.360.002732
N202S202SAGtTCt33C.36.30.001702
N202S202SAGtTCt33L.10.005714
N202S202SAGtTCt22AY.1000.000092
N202S202SagTagC22AY.1190.000071
N202S202SAGtTCt22AY.260.000057
N202S202SAGtTCt22AY.3.10.000171
N202S202SagTagC22AY.460.000208
N202S202SAGtTCt22AY.540.000191
N202S202SAGtTCt22B.1.1.1210.004854
N202S202SAGtTCt22B.1.1.2790.002242
N202S202SAGtTCt22B.1.1.3050.007722
N202S202SAGtTCt22B.1.1.3690.000892
N202S202SAGtTCt22B.1.1.4320.002532
N202S202SAGtTCt22B.1.1.540.006042
N202S202SAGtTCt22B.1.1.700.000682
N202S202SAGtTCt12B.1.2210.000071
N202S202SagTagC12B.1.2210.000071
N202S202SAGtTCt22B.1.3240.00321
N202S202SAGtTCt12B.1.3510.00003
N202S202SagTagC12B.1.3510.00003
N202S202SagTagC22B.1.36.80.002
N202S202SAGtTCt22B.1.5600.009259
N202S202SAGtTCt22B.1.5960.000174
N202S202SAGtTCt22D.50.00995
N202S202SAGtTCt22M.10.046512
N202S202SAGtTCt22N.90.011905
N202S202SagTagC110.055556
N202S202SAGtTCt11A.2.50.000499
N202S202SAGtTCt11AY.1050.000643
N202S202SagTagC11AY.1160.000287
N202S202SagTagC11AY.120.000316
N202S202SAGtTCt11AY.120.10.000321
N202S202SAGtTCt11AY.200.000039
N202S202SAGtTCt11AY.240.000431
N202S202SagTagC11AY.34.10.00051
N202S202SagTagC11AY.360.000148
N202S202SagTagC11AY.4.20.000022
N202S202SagTagC11AY.400.000964
N202S202SagTagC11AY.420.00004
N202S202SagTagC11AY.46.40.000165
N202S202SagTagC11AY.470.000031
N202S202SagTagC11AY.50.000021
N202S202SAGtTCt11AY.520.000814
N202S202SAGtTCt11AY.650.000533
N202S202SagTagC11AY.740.000116
N202S202SAGtTCt11AY.75.10.00018
N202S202SAGtTCt11AZ.10.000867
N202S202SAGtTCt11B0.000128
N202S202SAGtTCt11B.1.1.100.001115
N202S202SAGtTCt11B.1.1.1170.009709
N202S202SAGtTCt11B.1.1.1410.002012
N202S202SAGtTCt11B.1.1.1440.028571
N202S202SAGtTCt11B.1.1.1710.003676
N202S202SAGtTCt11B.1.1.1980.001468
N202S202SAGtTCt11B.1.1.2030.016949
N202S202SagTagC11B.1.1.2250.007194
N202S202SAGtTCt11B.1.1.2360.006897
N202S202SAGtTCt11B.1.1.2410.00207
N202S202SAGtTCt11B.1.1.2540.011236
N202S202SAGtTCt11B.1.1.2800.003086
N202S202SAGtTCt11B.1.1.2830.023256
N202S202SAGtTCt11B.1.1.2960.018182
N202S202SAGtTCt11B.1.1.2980.000862
N202S202SAGtTCt11B.1.1.3260.001761
N202S202SAGtTCt11B.1.1.3310.011628
N202S202SAGtTCt11B.1.1.3330.001076
N202S202SAGtTCt11B.1.1.3370.003597
N202S202SAGtTCt11B.1.1.3440.010753
N202S202SAGtTCt11B.1.1.3590.027778
N202S202SAGtTCt11B.1.1.3620.005618
N202S202SAGtTCt11B.1.1.3710.010417
N202S202SAGtTCt11B.1.1.3720.000689
N202S202SAGtTCt11B.1.1.3770.001381
N202S202SAGtTCt11B.1.1.3870.058824
N202S202SAGtTCt11B.1.1.3890.006061
N202S202SAGtTCt11B.1.1.3980.003226
N202S202SAGtTCt11B.1.1.4020.011111
N202S202SAGtTCt11B.1.1.4170.002703
N202S202SAGtTCt11B.1.1.4500.034483
N202S202SAGtTCt11B.1.1.480.002874
N202S202SAGtTCt11B.1.1.500.000679
N202S202SAGtTCt11B.1.1.5180.006329
N202S202SAGtTCt11B.1.1.610.008772
N202S202SAGtTCt11B.1.1.830.00271
N202S202SAGtTCt11B.1.1.990.02381
N202S202SAGtTCt11B.1.1390.000733
N202S202SAGtTCt11B.1.177.730.000566
N202S202SagTagC11B.1.2220.001692
N202S202SAGtTCt11B.1.2430.00007
N202S202SagTagC11B.1.258.220.002667
N202S202SagTagC11B.1.3560.001727
N202S202SagTagC11B.1.36.290.000517
N202S202SagTagC11B.1.36.360.000602
N202S202SagTagC11B.1.3610.001289
N202S202SAGtTCt11B.1.3750.00082
N202S202SAGtTCt11B.1.4970.000315
N202S202SagTagC11B.1.5300.007143
N202S202SAGtTCt11B.1.5800.004065
N202S202SAGtTCt11B.1.6200.000946
N202S202SAGtTCt11B.1.6230.000536
N202S202SAGtTCt11C.10.002392
N202S202SAGtTCt11C.30.10.006711
N202S202SAGtTCt11C.350.000774
N202S202SAGtTCt11C.390.018868
N202S202SAGtTCt11N.50.001767
N202S202SAGtTCt11P.40.003802
N202S202SAGtTCt11P.70.004367

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.