CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : Mut = S202R

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N202S202RnonsynagTagG13533133510.98655128877-28879
N202S202RnonsynagTagA135331570.011601328877-28879
N202S202RnonsynAgtCgt13533220.0016256628877-28879
N202S202RnonsynAgTCgG1353310.000073893428877-28879
N202S202RnonsynAgTCgA1353310.000073893428877-28879
N202S202RnonsynAgTCgC1353310.000073893428877-28879

Details of the mutation S202R within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N202S202RagTagG1335113533All0.002554
N202S202RagTagA15713533All0.00003
N202S202RAgtCgt2213533All0.000004
N202S202RAgTCgA113533All0
N202S202RAgTCgG113533All0
N202S202RAgTCgC113533All0
N202S202RagTagG1316813169B.1.5260.309508
N202S202RagTagA113169B.1.5260.000024
N202S202RagTagA143151B.1.5440.861446
N202S202RagTagG8151B.1.5440.048193
N202S202RagTagG7279B.10.000659
N202S202RagTagA779B.10.000064
N202S202RagTagG3333B.1.617.20.000124
N202S202RagTagG1515AY.1020.000398
N202S202RAgtCgt1215AY.440.000073
N202S202RagTagG315AY.440.000018
N202S202RagTagG88B.1.1.70.000007
N202S202RAgtCgt270.111111
N202S202RAgTCgC170.055556
N202S202RagTagA170.055556
N202S202RagTagG170.055556
N202S202RAgTCgG170.055556
N202S202RAgTCgA170.055556
N202S202RagTagG77B.1.177.730.003964
N202S202RagTagG45P.10.000063
N202S202RagTagA15P.10.000016
N202S202RagTagG44B0.000511
N202S202RagTagG44B.1.6230.002146
N202S202RAgtCgt23B.1.10.000036
N202S202RagTagG13B.1.10.000018
N202S202RagTagG33B.1.20.000026
N202S202RagTagG33B.1.2430.000209
N202S202RAgtCgt22AY.250.000012
N202S202RagTagG22AY.390.000049
N202S202RagTagG22AY.430.000009
N202S202RagTagG22B.1.5960.000174
N202S202RagTagA22B.1.617.10.000258
N202S202RagTagG22P.1.120.000968
N202S202RagTagG11AY.1170.000085
N202S202RAgtCgt11AY.200.000039
N202S202RAgtCgt11AY.40.000002
N202S202RAgtCgt11AY.46.50.000198
N202S202RagTagA11AY.690.000187
N202S202RagTagG11B.1.1.3120.001912
N202S202RagTagG11B.1.2340.000132
N202S202RAgtCgt11B.1.3360.002439
N202S202RagTagG11B.1.4290.000024
N202S202RagTagG11B.1.5300.007143
N202S202RagTagG11B.1.5800.004065
N202S202RagTagA11B.1.5900.004545
N202S202RagTagG11B.1.6370.000073
N202S202RagTagG11P.1.100.000269
N202S202RagTagG11P.1.170.000162