CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = N : Mut = S190G

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
N	190	S190G		nonsyn	Agt	Ggt	426	426	1	28841-28843

Details of the mutation S190G within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
N	190	S190G	Agt	Ggt	426	426	All	0.000081
N	190	S190G	Agt	Ggt	76	76	B.1.258	0.005058
N	190	S190G	Agt	Ggt	55	55	B.1.334	1
N	190	S190G	Agt	Ggt	35	35	B.1.1.398	0.112903
N	190	S190G	Agt	Ggt	34	34	B.1.248	1
N	190	S190G	Agt	Ggt	26	26	AY.4	0.00004
N	190	S190G	Agt	Ggt	22	22	B.1.1	0.000399
N	190	S190G	Agt	Ggt	21	21	B.1	0.000192
N	190	S190G	Agt	Ggt	20	20	B.1.1.7	0.000018
N	190	S190G	Agt	Ggt	15	15	AY.44	0.000091
N	190	S190G	Agt	Ggt	13	13	P.1	0.000205
N	190	S190G	Agt	Ggt	10	10	AY.14	0.00088
N	190	S190G	Agt	Ggt	9	9	AY.42	0.000362
N	190	S190G	Agt	Ggt	8	8	AY.39	0.000198
N	190	S190G	Agt	Ggt	7	7	AY.3	0.00007
N	190	S190G	Agt	Ggt	6	6	A	0.002322
N	190	S190G	Agt	Ggt	6	6	AY.25	0.000036
N	190	S190G	Agt	Ggt	5	5	AY.27	0.000324
N	190	S190G	Agt	Ggt	5	5	B.1.617.2	0.000019
N	190	S190G	Agt	Ggt	4	4	AY.16	0.001519
N	190	S190G	Agt	Ggt	3	3	AY.43	0.000013
N	190	S190G	Agt	Ggt	3	3	AY.9.1	0.000251
N	190	S190G	Agt	Ggt	3	3	B.1.1.148	0.026316
N	190	S190G	Agt	Ggt	3	3	B.1.1.28	0.000934
N	190	S190G	Agt	Ggt	3	3	B.1.2	0.000026
N	190	S190G	Agt	Ggt	2	2	AY.103	0.000012
N	190	S190G	Agt	Ggt	2	2	AY.16.1	0.00094
N	190	S190G	Agt	Ggt	2	2	AY.4.5	0.000215
N	190	S190G	Agt	Ggt	2	2	B.1.1.101	0.02
N	190	S190G	Agt	Ggt	2	2	B.1.1.434	0.000697
N	190	S190G	Agt	Ggt	2	2	B.1.428.2	0.066667
N	190	S190G	Agt	Ggt	2	2	B.1.526	0.000047
N	190	S190G	Agt	Ggt	1	1	AY.100	0.000046
N	190	S190G	Agt	Ggt	1	1	AY.102	0.000027
N	190	S190G	Agt	Ggt	1	1	AY.33	0.000067
N	190	S190G	Agt	Ggt	1	1	AY.4.2	0.000022
N	190	S190G	Agt	Ggt	1	1	AY.4.3	0.000842
N	190	S190G	Agt	Ggt	1	1	AY.45	0.000122
N	190	S190G	Agt	Ggt	1	1	AY.47	0.000031
N	190	S190G	Agt	Ggt	1	1	AY.93	0.000273
N	190	S190G	Agt	Ggt	1	1	B	0.000128
N	190	S190G	Agt	Ggt	1	1	B.1.1.10	0.001115
N	190	S190G	Agt	Ggt	1	1	B.1.1.298	0.000862
N	190	S190G	Agt	Ggt	1	1	B.1.1.348	0.000796
N	190	S190G	Agt	Ggt	1	1	B.1.108	0.005814
N	190	S190G	Agt	Ggt	1	1	B.1.160	0.000031
N	190	S190G	Agt	Ggt	1	1	B.1.177	0.000013
N	190	S190G	Agt	Ggt	1	1	B.1.243	0.00007
N	190	S190G	Agt	Ggt	1	1	B.1.258.11	0.000396
N	190	S190G	Agt	Ggt	1	1	B.1.621	0.000089
N	190	S190G	Agt	Ggt	1	1	P.1.14	0.000048
N	190	S190G	Agt	Ggt	1	1	R.1	0.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.