CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : Mut = S187L

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N187S187LnonsyntCatTa15221152150.99960628832-28834
N187S187LnonsyntCAtTG1522160.00039419228832-28834

Details of the mutation S187L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N187S187LtCatTa1521515221All0.00291
N187S187LtCAtTG615221All0.000001
N187S187LtCatTa1109911105R.10.99901
N187S187LtCAtTG611105R.10.00054
N187S187LtCatTa786786B.1.2650.998729
N187S187LtCatTa749749B.1.4160.950508
N187S187LtCatTa622622B.1.416.10.971875
N187S187LtCatTa389389B.10.003563
N187S187LtCatTa300300B.1.10.005442
N187S187LtCatTa254254AY.510.230909
N187S187LtCatTa221221B.1.5410.977876
N187S187LtCatTa102102B.1.1.2200.189591
N187S187LtCatTa7777B.1.6221
N187S187LtCatTa6666B.1.6290.88
N187S187LtCatTa4343B.1.2580.002862
N187S187LtCatTa3434B.1.1.5250.185792
N187S187LtCatTa3333B.1.1.70.00003
N187S187LtCatTa2121AY.260.000595
N187S187LtCatTa1919AY.30.000189
N187S187LtCatTa1919B.1.617.20.000072
N187S187LtCatTa1717B.1.1.3170.006999
N187S187LtCatTa1616AY.430.000071
N187S187LtCatTa1515AY.4.10.011062
N187S187LtCatTa1212AY.40.000019
N187S187LtCatTa1212B.1.1.100.013378
N187S187LtCatTa1111B.1.5950.002871
N187S187LtCatTa1010AY.470.000311
N187S187LtCatTa1010B.1.20.000088
N187S187LtCatTa99B.1.1.2940.011392
N187S187LtCatTa99B.1.6210.000797
N187S187LtCatTa88AY.370.002528
N187S187LtCatTa88AY.9.10.00067
N187S187LtCatTa88AY.9.20.000294
N187S187LtCatTa88B.1.160.180.058394
N187S187LtCatTa88B.1.1770.000105
N187S187LtCatTa77B.290.024561
N187S187LtCatTa66AY.250.000036
N187S187LtCatTa66AY.440.000037
N187S187LtCatTa66AY.99.20.000553
N187S187LtCatTa66P.10.000095
N187S187LtCatTa55A.10.001409
N187S187LtCatTa55B.1.1.4020.055556
N187S187LtCatTa55B.1.160.320.021459
N187S187LtCatTa44AY.280.007561
N187S187LtCatTa44AY.340.000388
N187S187LtCatTa44B.1.1.2220.000816
N187S187LtCatTa44B.1.1.4230.25
N187S187LtCatTa44B.1.1600.000125
N187S187LtCatTa44B.400.001457
N187S187LtCatTa44C.370.000464
N187S187LtCatTa33AY.1020.00008
N187S187LtCatTa33AY.1030.000019
N187S187LtCatTa33AY.380.001498
N187S187LtCatTa33AY.4.20.000065
N187S187LtCatTa33B.1.1.3550.046154
N187S187LtCatTa33B.1.1.390.001529
N187S187LtCatTa33B.1.1.5210.016043
N187S187LtCatTa33B.1.177.240.003886
N187S187LtCatTa33B.1.2910.057692
N187S187LtCatTa33B.1.36.290.001552
N187S187LtCatTa33B.1.3670.002377
N187S187LtCatTa33B.1.5440.018072
N187S187LtCatTa22AY.240.000862
N187S187LtCatTa22AY.390.000049
N187S187LtCatTa22AY.39.10.000079
N187S187LtCatTa22AY.420.00008
N187S187LtCatTa22AY.610.00021
N187S187LtCatTa22AY.750.000112
N187S187LtCatTa22AY.980.000158
N187S187LtCatTa22B.1.1.1890.003026
N187S187LtCatTa22B.1.1.2910.001485
N187S187LtCatTa22B.1.1.3050.007722
N187S187LtCatTa22B.1.1.4110.029412
N187S187LtCatTa22B.1.1.510.003436
N187S187LtCatTa22B.1.1.830.00542
N187S187LtCatTa22B.1.1570.00597
N187S187LtCatTa22B.1.177.100.001756
N187S187LtCatTa22B.1.258.170.000208
N187S187LtCatTa22B.1.3510.000059
N187S187LtCatTa22B.1.4290.000047
N187S187LtCatTa22B.1.4700.002809
N187S187LtCatTa22B.1.5640.000852
N187S187LtCatTa22B.1.5960.000174
N187S187LtCatTa22B.1.617.30.00597
N187S187LtCatTa22B.1.6370.000146
N187S187LtCatTa22B.1.6380.105263
N187S187LtCatTa22B.30.001661
N187S187LtCatTa22B.550.0059
N187S187LtCatTa11A0.000387
N187S187LtCatTa11A.20.000662
N187S187LtCatTa11A.60.005128
N187S187LtCatTa11AY.1000.000046
N187S187LtCatTa11AY.1130.000142
N187S187LtCatTa11AY.120.20.001285
N187S187LtCatTa11AY.16.10.00047
N187S187LtCatTa11AY.290.000016
N187S187LtCatTa11AY.34.10.00051
N187S187LtCatTa11AY.4.40.000409
N187S187LtCatTa11AY.450.000122
N187S187LtCatTa11AY.46.20.000635
N187S187LtCatTa11AY.46.40.000165
N187S187LtCatTa11AY.490.003195
N187S187LtCatTa11AY.75.10.00018
N187S187LtCatTa11B0.000128
N187S187LtCatTa11B.1.1.1860.003436
N187S187LtCatTa11B.1.1.1960.005714
N187S187LtCatTa11B.1.1.1980.001468
N187S187LtCatTa11B.1.1.2070.001182
N187S187LtCatTa11B.1.1.2360.006897
N187S187LtCatTa11B.1.1.2630.001558
N187S187LtCatTa11B.1.1.2730.006757
N187S187LtCatTa11B.1.1.2770.000759
N187S187LtCatTa11B.1.1.3120.001912
N187S187LtCatTa11B.1.1.330.000421
N187S187LtCatTa11B.1.1.3560.008547
N187S187LtCatTa11B.1.1.4200.001006
N187S187LtCatTa11B.1.1.4480.002033
N187S187LtCatTa11B.1.1.4640.001473
N187S187LtCatTa11B.1.1.5190.00004
N187S187LtCatTa11B.1.1.5220.017241
N187S187LtCatTa11B.1.1.5230.001563
N187S187LtCatTa11B.1.1.700.000341
N187S187LtCatTa11B.1.1.80.003584
N187S187LtCatTa11B.1.1390.000733
N187S187LtCatTa11B.1.160.140.002119
N187S187LtCatTa11B.1.177.70.000165
N187S187LtCatTa11B.1.214.10.02
N187S187LtCatTa11B.1.2340.000132
N187S187LtCatTa11B.1.2400.000216
N187S187LtCatTa11B.1.3110.000275
N187S187LtCatTa11B.1.36.360.000602
N187S187LtCatTa11B.1.3750.00082
N187S187LtCatTa11B.1.4090.000781
N187S187LtCatTa11B.1.4270.00005
N187S187LtCatTa11B.1.4600.017857
N187S187LtCatTa11B.1.5250.000113
N187S187LtCatTa11B.1.5330.009615
N187S187LtCatTa11B.1.5760.000907
N187S187LtCatTa11B.1.5820.000491
N187S187LtCatTa11B.230.002924
N187S187LtCatTa11B.4.10.018868
N187S187LtCatTa11B.610.005747
N187S187LtCatTa11C.1.20.004255
N187S187LtCatTa11C.60.037037
N187S187LtCatTa11P.1.120.000484
N187S187LtCatTa11P.1.170.000162

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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