CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
N | 187 | S187L | nonsyn | tCa | tTa | 15221 | 15215 | 0.999606 | 28832-28834 | |
N | 187 | S187L | nonsyn | tCA | tTG | 15221 | 6 | 0.000394192 | 28832-28834 |
Details of the mutation S187L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
N | 187 | S187L | tCa | tTa | 15215 | 15221 | All | 0.00291 |
N | 187 | S187L | tCA | tTG | 6 | 15221 | All | 0.000001 |
N | 187 | S187L | tCa | tTa | 11099 | 11105 | R.1 | 0.99901 |
N | 187 | S187L | tCA | tTG | 6 | 11105 | R.1 | 0.00054 |
N | 187 | S187L | tCa | tTa | 786 | 786 | B.1.265 | 0.998729 |
N | 187 | S187L | tCa | tTa | 749 | 749 | B.1.416 | 0.950508 |
N | 187 | S187L | tCa | tTa | 622 | 622 | B.1.416.1 | 0.971875 |
N | 187 | S187L | tCa | tTa | 389 | 389 | B.1 | 0.003563 |
N | 187 | S187L | tCa | tTa | 300 | 300 | B.1.1 | 0.005442 |
N | 187 | S187L | tCa | tTa | 254 | 254 | AY.51 | 0.230909 |
N | 187 | S187L | tCa | tTa | 221 | 221 | B.1.541 | 0.977876 |
N | 187 | S187L | tCa | tTa | 102 | 102 | B.1.1.220 | 0.189591 |
N | 187 | S187L | tCa | tTa | 77 | 77 | B.1.622 | 1 |
N | 187 | S187L | tCa | tTa | 66 | 66 | B.1.629 | 0.88 |
N | 187 | S187L | tCa | tTa | 43 | 43 | B.1.258 | 0.002862 |
N | 187 | S187L | tCa | tTa | 34 | 34 | B.1.1.525 | 0.185792 |
N | 187 | S187L | tCa | tTa | 33 | 33 | B.1.1.7 | 0.00003 |
N | 187 | S187L | tCa | tTa | 21 | 21 | AY.26 | 0.000595 |
N | 187 | S187L | tCa | tTa | 19 | 19 | AY.3 | 0.000189 |
N | 187 | S187L | tCa | tTa | 19 | 19 | B.1.617.2 | 0.000072 |
N | 187 | S187L | tCa | tTa | 17 | 17 | B.1.1.317 | 0.006999 |
N | 187 | S187L | tCa | tTa | 16 | 16 | AY.43 | 0.000071 |
N | 187 | S187L | tCa | tTa | 15 | 15 | AY.4.1 | 0.011062 |
N | 187 | S187L | tCa | tTa | 12 | 12 | AY.4 | 0.000019 |
N | 187 | S187L | tCa | tTa | 12 | 12 | B.1.1.10 | 0.013378 |
N | 187 | S187L | tCa | tTa | 11 | 11 | B.1.595 | 0.002871 |
N | 187 | S187L | tCa | tTa | 10 | 10 | AY.47 | 0.000311 |
N | 187 | S187L | tCa | tTa | 10 | 10 | B.1.2 | 0.000088 |
N | 187 | S187L | tCa | tTa | 9 | 9 | B.1.1.294 | 0.011392 |
N | 187 | S187L | tCa | tTa | 9 | 9 | B.1.621 | 0.000797 |
N | 187 | S187L | tCa | tTa | 8 | 8 | AY.37 | 0.002528 |
N | 187 | S187L | tCa | tTa | 8 | 8 | AY.9.1 | 0.00067 |
N | 187 | S187L | tCa | tTa | 8 | 8 | AY.9.2 | 0.000294 |
N | 187 | S187L | tCa | tTa | 8 | 8 | B.1.160.18 | 0.058394 |
N | 187 | S187L | tCa | tTa | 8 | 8 | B.1.177 | 0.000105 |
N | 187 | S187L | tCa | tTa | 7 | 7 | B.29 | 0.024561 |
N | 187 | S187L | tCa | tTa | 6 | 6 | AY.25 | 0.000036 |
N | 187 | S187L | tCa | tTa | 6 | 6 | AY.44 | 0.000037 |
N | 187 | S187L | tCa | tTa | 6 | 6 | AY.99.2 | 0.000553 |
N | 187 | S187L | tCa | tTa | 6 | 6 | P.1 | 0.000095 |
N | 187 | S187L | tCa | tTa | 5 | 5 | A.1 | 0.001409 |
N | 187 | S187L | tCa | tTa | 5 | 5 | B.1.1.402 | 0.055556 |
N | 187 | S187L | tCa | tTa | 5 | 5 | B.1.160.32 | 0.021459 |
N | 187 | S187L | tCa | tTa | 4 | 4 | AY.28 | 0.007561 |
N | 187 | S187L | tCa | tTa | 4 | 4 | AY.34 | 0.000388 |
N | 187 | S187L | tCa | tTa | 4 | 4 | B.1.1.222 | 0.000816 |
N | 187 | S187L | tCa | tTa | 4 | 4 | B.1.1.423 | 0.25 |
N | 187 | S187L | tCa | tTa | 4 | 4 | B.1.160 | 0.000125 |
N | 187 | S187L | tCa | tTa | 4 | 4 | B.40 | 0.001457 |
N | 187 | S187L | tCa | tTa | 4 | 4 | C.37 | 0.000464 |
N | 187 | S187L | tCa | tTa | 3 | 3 | AY.102 | 0.00008 |
N | 187 | S187L | tCa | tTa | 3 | 3 | AY.103 | 0.000019 |
N | 187 | S187L | tCa | tTa | 3 | 3 | AY.38 | 0.001498 |
N | 187 | S187L | tCa | tTa | 3 | 3 | AY.4.2 | 0.000065 |
N | 187 | S187L | tCa | tTa | 3 | 3 | B.1.1.355 | 0.046154 |
N | 187 | S187L | tCa | tTa | 3 | 3 | B.1.1.39 | 0.001529 |
N | 187 | S187L | tCa | tTa | 3 | 3 | B.1.1.521 | 0.016043 |
N | 187 | S187L | tCa | tTa | 3 | 3 | B.1.177.24 | 0.003886 |
N | 187 | S187L | tCa | tTa | 3 | 3 | B.1.291 | 0.057692 |
N | 187 | S187L | tCa | tTa | 3 | 3 | B.1.36.29 | 0.001552 |
N | 187 | S187L | tCa | tTa | 3 | 3 | B.1.367 | 0.002377 |
N | 187 | S187L | tCa | tTa | 3 | 3 | B.1.544 | 0.018072 |
N | 187 | S187L | tCa | tTa | 2 | 2 | AY.24 | 0.000862 |
N | 187 | S187L | tCa | tTa | 2 | 2 | AY.39 | 0.000049 |
N | 187 | S187L | tCa | tTa | 2 | 2 | AY.39.1 | 0.000079 |
N | 187 | S187L | tCa | tTa | 2 | 2 | AY.42 | 0.00008 |
N | 187 | S187L | tCa | tTa | 2 | 2 | AY.61 | 0.00021 |
N | 187 | S187L | tCa | tTa | 2 | 2 | AY.75 | 0.000112 |
N | 187 | S187L | tCa | tTa | 2 | 2 | AY.98 | 0.000158 |
N | 187 | S187L | tCa | tTa | 2 | 2 | B.1.1.189 | 0.003026 |
N | 187 | S187L | tCa | tTa | 2 | 2 | B.1.1.291 | 0.001485 |
N | 187 | S187L | tCa | tTa | 2 | 2 | B.1.1.305 | 0.007722 |
N | 187 | S187L | tCa | tTa | 2 | 2 | B.1.1.411 | 0.029412 |
N | 187 | S187L | tCa | tTa | 2 | 2 | B.1.1.51 | 0.003436 |
N | 187 | S187L | tCa | tTa | 2 | 2 | B.1.1.83 | 0.00542 |
N | 187 | S187L | tCa | tTa | 2 | 2 | B.1.157 | 0.00597 |
N | 187 | S187L | tCa | tTa | 2 | 2 | B.1.177.10 | 0.001756 |
N | 187 | S187L | tCa | tTa | 2 | 2 | B.1.258.17 | 0.000208 |
N | 187 | S187L | tCa | tTa | 2 | 2 | B.1.351 | 0.000059 |
N | 187 | S187L | tCa | tTa | 2 | 2 | B.1.429 | 0.000047 |
N | 187 | S187L | tCa | tTa | 2 | 2 | B.1.470 | 0.002809 |
N | 187 | S187L | tCa | tTa | 2 | 2 | B.1.564 | 0.000852 |
N | 187 | S187L | tCa | tTa | 2 | 2 | B.1.596 | 0.000174 |
N | 187 | S187L | tCa | tTa | 2 | 2 | B.1.617.3 | 0.00597 |
N | 187 | S187L | tCa | tTa | 2 | 2 | B.1.637 | 0.000146 |
N | 187 | S187L | tCa | tTa | 2 | 2 | B.1.638 | 0.105263 |
N | 187 | S187L | tCa | tTa | 2 | 2 | B.3 | 0.001661 |
N | 187 | S187L | tCa | tTa | 2 | 2 | B.55 | 0.0059 |
N | 187 | S187L | tCa | tTa | 1 | 1 | A | 0.000387 |
N | 187 | S187L | tCa | tTa | 1 | 1 | A.2 | 0.000662 |
N | 187 | S187L | tCa | tTa | 1 | 1 | A.6 | 0.005128 |
N | 187 | S187L | tCa | tTa | 1 | 1 | AY.100 | 0.000046 |
N | 187 | S187L | tCa | tTa | 1 | 1 | AY.113 | 0.000142 |
N | 187 | S187L | tCa | tTa | 1 | 1 | AY.120.2 | 0.001285 |
N | 187 | S187L | tCa | tTa | 1 | 1 | AY.16.1 | 0.00047 |
N | 187 | S187L | tCa | tTa | 1 | 1 | AY.29 | 0.000016 |
N | 187 | S187L | tCa | tTa | 1 | 1 | AY.34.1 | 0.00051 |
N | 187 | S187L | tCa | tTa | 1 | 1 | AY.4.4 | 0.000409 |
N | 187 | S187L | tCa | tTa | 1 | 1 | AY.45 | 0.000122 |
N | 187 | S187L | tCa | tTa | 1 | 1 | AY.46.2 | 0.000635 |
N | 187 | S187L | tCa | tTa | 1 | 1 | AY.46.4 | 0.000165 |
N | 187 | S187L | tCa | tTa | 1 | 1 | AY.49 | 0.003195 |
N | 187 | S187L | tCa | tTa | 1 | 1 | AY.75.1 | 0.00018 |
N | 187 | S187L | tCa | tTa | 1 | 1 | B | 0.000128 |
N | 187 | S187L | tCa | tTa | 1 | 1 | B.1.1.186 | 0.003436 |
N | 187 | S187L | tCa | tTa | 1 | 1 | B.1.1.196 | 0.005714 |
N | 187 | S187L | tCa | tTa | 1 | 1 | B.1.1.198 | 0.001468 |
N | 187 | S187L | tCa | tTa | 1 | 1 | B.1.1.207 | 0.001182 |
N | 187 | S187L | tCa | tTa | 1 | 1 | B.1.1.236 | 0.006897 |
N | 187 | S187L | tCa | tTa | 1 | 1 | B.1.1.263 | 0.001558 |
N | 187 | S187L | tCa | tTa | 1 | 1 | B.1.1.273 | 0.006757 |
N | 187 | S187L | tCa | tTa | 1 | 1 | B.1.1.277 | 0.000759 |
N | 187 | S187L | tCa | tTa | 1 | 1 | B.1.1.312 | 0.001912 |
N | 187 | S187L | tCa | tTa | 1 | 1 | B.1.1.33 | 0.000421 |
N | 187 | S187L | tCa | tTa | 1 | 1 | B.1.1.356 | 0.008547 |
N | 187 | S187L | tCa | tTa | 1 | 1 | B.1.1.420 | 0.001006 |
N | 187 | S187L | tCa | tTa | 1 | 1 | B.1.1.448 | 0.002033 |
N | 187 | S187L | tCa | tTa | 1 | 1 | B.1.1.464 | 0.001473 |
N | 187 | S187L | tCa | tTa | 1 | 1 | B.1.1.519 | 0.00004 |
N | 187 | S187L | tCa | tTa | 1 | 1 | B.1.1.522 | 0.017241 |
N | 187 | S187L | tCa | tTa | 1 | 1 | B.1.1.523 | 0.001563 |
N | 187 | S187L | tCa | tTa | 1 | 1 | B.1.1.70 | 0.000341 |
N | 187 | S187L | tCa | tTa | 1 | 1 | B.1.1.8 | 0.003584 |
N | 187 | S187L | tCa | tTa | 1 | 1 | B.1.139 | 0.000733 |
N | 187 | S187L | tCa | tTa | 1 | 1 | B.1.160.14 | 0.002119 |
N | 187 | S187L | tCa | tTa | 1 | 1 | B.1.177.7 | 0.000165 |
N | 187 | S187L | tCa | tTa | 1 | 1 | B.1.214.1 | 0.02 |
N | 187 | S187L | tCa | tTa | 1 | 1 | B.1.234 | 0.000132 |
N | 187 | S187L | tCa | tTa | 1 | 1 | B.1.240 | 0.000216 |
N | 187 | S187L | tCa | tTa | 1 | 1 | B.1.311 | 0.000275 |
N | 187 | S187L | tCa | tTa | 1 | 1 | B.1.36.36 | 0.000602 |
N | 187 | S187L | tCa | tTa | 1 | 1 | B.1.375 | 0.00082 |
N | 187 | S187L | tCa | tTa | 1 | 1 | B.1.409 | 0.000781 |
N | 187 | S187L | tCa | tTa | 1 | 1 | B.1.427 | 0.00005 |
N | 187 | S187L | tCa | tTa | 1 | 1 | B.1.460 | 0.017857 |
N | 187 | S187L | tCa | tTa | 1 | 1 | B.1.525 | 0.000113 |
N | 187 | S187L | tCa | tTa | 1 | 1 | B.1.533 | 0.009615 |
N | 187 | S187L | tCa | tTa | 1 | 1 | B.1.576 | 0.000907 |
N | 187 | S187L | tCa | tTa | 1 | 1 | B.1.582 | 0.000491 |
N | 187 | S187L | tCa | tTa | 1 | 1 | B.23 | 0.002924 |
N | 187 | S187L | tCa | tTa | 1 | 1 | B.4.1 | 0.018868 |
N | 187 | S187L | tCa | tTa | 1 | 1 | B.61 | 0.005747 |
N | 187 | S187L | tCa | tTa | 1 | 1 | C.1.2 | 0.004255 |
N | 187 | S187L | tCa | tTa | 1 | 1 | C.6 | 0.037037 |
N | 187 | S187L | tCa | tTa | 1 | 1 | P.1.12 | 0.000484 |
N | 187 | S187L | tCa | tTa | 1 | 1 | P.1.17 | 0.000162 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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