CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : Mut = R32H

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N32R32HnonsyncGccAc38253825128367-28369

Details of the mutation R32H within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N32R32HcGccAc38253825All0.000732
N32R32HcGccAc12311231B.1.4221
N32R32HcGccAc401401B.1.2210.028484
N32R32HcGccAc262262AY.610.027452
N32R32HcGccAc236236B.1.617.20.000889
N32R32HcGccAc219219AY.440.001333
N32R32HcGccAc197197AY.40.000307
N32R32HcGccAc176176B.1.1.1570.160731
N32R32HcGccAc139139B.1.1.70.000124
N32R32HcGccAc8787B.1.177.570.024445
N32R32HcGccAc8282AZ.10.071119
N32R32HcGccAc7373AY.1030.000453
N32R32HcGccAc6969AY.140.006073
N32R32HcGccAc4848B.10.00044
N32R32HcGccAc4545B.1.3050.096774
N32R32HcGccAc2929AY.50.000599
N32R32HcGccAc2727B.1.20.000238
N32R32HcGccAc2727B.1.4290.000635
N32R32HcGccAc2727B.1.5260.000635
N32R32HcGccAc2020AY.75.10.003606
N32R32HcGccAc1919AY.250.000114
N32R32HcGccAc1919B.1.36.360.011439
N32R32HcGccAc1919B.1.617.10.00245
N32R32HcGccAc1818B.1.1.630.006944
N32R32HcGccAc1616AY.4.40.006547
N32R32HcGccAc1515AY.200.000583
N32R32HcGccAc1515B.1.10.000272
N32R32HcGccAc1313AY.30.000129
N32R32HcGccAc1212AY.470.000373
N32R32HcGccAc1111AY.1020.000292
N32R32HcGccAc1111P.10.000173
N32R32HcGccAc1010AY.290.000158
N32R32HcGccAc1010B.1.1280.006353
N32R32HcGccAc1010B.1.3510.000297
N32R32HcGccAc88B.1.1.500.005431
N32R32HcGccAc88B.1.4270.000404
N32R32HcGccAc77AY.260.000198
N32R32HcGccAc77B.1.1770.000092
N32R32HcGccAc77B.1.3660.034146
N32R32HcGccAc66AY.1200.000223
N32R32HcGccAc66AY.430.000027
N32R32HcGccAc66AY.910.004383
N32R32HcGccAc66B.1.1.5190.000238
N32R32HcGccAc66B.1.4590.02449
N32R32HcGccAc55AY.1000.00023
N32R32HcGccAc55AY.4.20.000108
N32R32HcGccAc55AY.710.002375
N32R32HcGccAc55B.1.4480.013123
N32R32HcGccAc55B.60.00455
N32R32HcGccAc44AY.270.000259
N32R32HcGccAc44AY.420.000161
N32R32HcGccAc44AY.860.00332
N32R32HcGccAc44C.110.042553
N32R32HcGccAc33AY.1100.000338
N32R32HcGccAc33AY.1130.000427
N32R32HcGccAc33AY.240.001293
N32R32HcGccAc33AY.390.000074
N32R32HcGccAc33AY.540.000286
N32R32HcGccAc33AY.620.001307
N32R32HcGccAc33AY.870.002498
N32R32HcGccAc33B.1.1.3480.002389
N32R32HcGccAc33B.1.177.600.000655
N32R32HcGccAc33B.1.2580.0002
N32R32HcGccAc33B.1.619.10.001924
N32R32HcGccAc33R.10.00027
N32R32HcGccAc22A.23.10.001408
N32R32HcGccAc22AY.130.000322
N32R32HcGccAc22AY.230.000139
N32R32HcGccAc22AY.550.001835
N32R32HcGccAc22AY.590.001059
N32R32HcGccAc22AY.650.001066
N32R32HcGccAc22B.1.1.3180.000604
N32R32HcGccAc22B.1.2430.000139
N32R32HcGccAc22B.1.5960.000174
N32R32HcGccAc22B.1.6090.000959
N32R32HcGccAc22B.1.6190.001742
N32R32HcGccAc22B.1.6210.000177
N32R32HcGccAc22B.1.930.001867
N32R32HcGccAc22B.350.015625
N32R32HcGccAc22P.1.140.000096
N32R32HcGccAc22P.1.150.000465
N32R32HcGccAc11A.2.40.003367
N32R32HcGccAc11AP.10.001502
N32R32HcGccAc11AY.100.00053
N32R32HcGccAc11AY.1170.000085
N32R32HcGccAc11AY.1180.000063
N32R32HcGccAc11AY.1190.000035
N32R32HcGccAc11AY.1210.000135
N32R32HcGccAc11AY.160.00038
N32R32HcGccAc11AY.16.10.00047
N32R32HcGccAc11AY.190.00114
N32R32HcGccAc11AY.320.000532
N32R32HcGccAc11AY.34.10.00051
N32R32HcGccAc11AY.360.000148
N32R32HcGccAc11AY.39.10.00004
N32R32HcGccAc11AY.410.000294
N32R32HcGccAc11AY.460.000104
N32R32HcGccAc11AY.46.60.000072
N32R32HcGccAc11AY.570.000656
N32R32HcGccAc11AY.640.000595
N32R32HcGccAc11AY.690.000187
N32R32HcGccAc11AY.750.000056
N32R32HcGccAc11AY.80.000606
N32R32HcGccAc11AY.950.000761
N32R32HcGccAc11AY.980.000079
N32R32HcGccAc11AY.98.10.000048
N32R32HcGccAc11B0.000128
N32R32HcGccAc11B.1.1.1760.000439
N32R32HcGccAc11B.1.1.1890.001513
N32R32HcGccAc11B.1.1.280.000311
N32R32HcGccAc11B.1.1.3110.000358
N32R32HcGccAc11B.1.1.3620.005618
N32R32HcGccAc11B.1.1.370.000193
N32R32HcGccAc11B.1.1.4340.000349
N32R32HcGccAc11B.1.1.4400.011765
N32R32HcGccAc11B.1.1310.008772
N32R32HcGccAc11B.1.160.100.008065
N32R32HcGccAc11B.1.177.40.000211
N32R32HcGccAc11B.1.177.70.000165
N32R32HcGccAc11B.1.177.750.001041
N32R32HcGccAc11B.1.2340.000132
N32R32HcGccAc11B.1.2400.000216
N32R32HcGccAc11B.1.36.10.00114
N32R32HcGccAc11B.1.4870.019608
N32R32HcGccAc11B.1.4970.000315
N32R32HcGccAc11B.1.5090.000866
N32R32HcGccAc11B.1.5250.000113
N32R32HcGccAc11B.1.5550.022222
N32R32HcGccAc11B.1.5640.000426
N32R32HcGccAc11B.1.5950.000261
N32R32HcGccAc11B.1.6230.000536
N32R32HcGccAc11B.1.6370.000073
N32R32HcGccAc11N.50.001767
N32R32HcGccAc11P.1.100.000269
N32R32HcGccAc11P.1.40.000977
N32R32HcGccAc11P.20.000187
N32R32HcGccAc11U.10.012821

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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