CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = N : Mut = R209K

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
N	209	R209K		nonsyn	aGa	aAa	1665	1665	1	28898-28900

Details of the mutation R209K within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
N	209	R209K	aGa	aAa	1665	1665	All	0.000318
N	209	R209K	aGa	aAa	361	361	AY.29	0.005694
N	209	R209K	aGa	aAa	288	288	B.1	0.002638
N	209	R209K	aGa	aAa	260	260	B.1.425	0.778443
N	209	R209K	aGa	aAa	141	141	P.1	0.002221
N	209	R209K	aGa	aAa	104	104	AY.4	0.000162
N	209	R209K	aGa	aAa	96	96	B.1.2	0.000845
N	209	R209K	aGa	aAa	51	51	B.1.1.519	0.002025
N	209	R209K	aGa	aAa	35	35	B.1.1	0.000635
N	209	R209K	aGa	aAa	24	24	B.1.221.1	0.069767
N	209	R209K	aGa	aAa	22	22	B.1.221	0.001563
N	209	R209K	aGa	aAa	21	21	B.1.351	0.000624
N	209	R209K	aGa	aAa	19	19	B.1.177.86	0.003486
N	209	R209K	aGa	aAa	14	14	AY.113	0.001993
N	209	R209K	aGa	aAa	13	13	B.1.1.7	0.000012
N	209	R209K	aGa	aAa	13	13	B.1.617.2	0.000049
N	209	R209K	aGa	aAa	11	11	B.1.503	0.027363
N	209	R209K	aGa	aAa	8	8	B.1.177.42	0.007156
N	209	R209K	aGa	aAa	7	7	B.1.177	0.000092
N	209	R209K	aGa	aAa	7	7	B.1.243	0.000487
N	209	R209K	aGa	aAa	6	6	P.1.14	0.000287
N	209	R209K	aGa	aAa	5	5	AY.33	0.000334
N	209	R209K	aGa	aAa	5	5	AY.79	0.006053
N	209	R209K	aGa	aAa	5	5	B.1.160	0.000156
N	209	R209K	aGa	aAa	4	4	AY.29.1	0.000882
N	209	R209K	aGa	aAa	4	4	AY.44	0.000024
N	209	R209K	aGa	aAa	4	4	B.1.1.214	0.000222
N	209	R209K	aGa	aAa	4	4	B.1.177.16	0.002658
N	209	R209K	aGa	aAa	4	4	B.1.199	0.016529
N	209	R209K	aGa	aAa	4	4	B.1.596	0.000349
N	209	R209K	aGa	aAa	3	3	AY.6	0.000123
N	209	R209K	aGa	aAa	3	3	B.1.1.12	0.022388
N	209	R209K	aGa	aAa	3	3	B.1.1.222	0.000612
N	209	R209K	aGa	aAa	3	3	B.1.1.387	0.176471
N	209	R209K	aGa	aAa	3	3	B.1.177.56	0.002003
N	209	R209K	aGa	aAa	3	3	B.1.36.8	0.003
N	209	R209K	aGa	aAa	3	3	B.40	0.001093
N	209	R209K	aGa	aAa	3	3	P.1.1	0.000953
N	209	R209K	aGa	aAa	2	2	AY.4.2	0.000043
N	209	R209K	aGa	aAa	2	2	AY.43	0.000009
N	209	R209K	aGa	aAa	2	2	AY.45	0.000243
N	209	R209K	aGa	aAa	2	2	AY.5	0.000041
N	209	R209K	aGa	aAa	2	2	AY.9.2	0.000073
N	209	R209K	aGa	aAa	2	2	B.1.1.312	0.003824
N	209	R209K	aGa	aAa	2	2	B.1.177.44	0.001038
N	209	R209K	aGa	aAa	2	2	B.1.258.10	0.022727
N	209	R209K	aGa	aAa	2	2	B.1.258.3	0.00335
N	209	R209K	aGa	aAa	2	2	B.1.36.29	0.001035
N	209	R209K	aGa	aAa	2	2	B.1.409	0.001563
N	209	R209K	aGa	aAa	2	2	B.1.422	0.001625
N	209	R209K	aGa	aAa	2	2	B.1.468	0.011429
N	209	R209K	aGa	aAa	2	2	B.1.470	0.002809
N	209	R209K	aGa	aAa	2	2	B.1.582	0.000981
N	209	R209K	aGa	aAa	2	2	D.2	0.00015
N	209	R209K	aGa	aAa	2	2	P.1.12	0.000968
N	209	R209K	aGa	aAa	2	2	P.1.15	0.000465
N	209	R209K	aGa	aAa	2	2	P.1.17	0.000324
N	209	R209K	aGa	aAa	2	2	P.1.7	0.000639
N	209	R209K	aGa	aAa	1	1	AM.4	0.003571
N	209	R209K	aGa	aAa	1	1	AU.2	0.002421
N	209	R209K	aGa	aAa	1	1	AY.100	0.000046
N	209	R209K	aGa	aAa	1	1	AY.102	0.000027
N	209	R209K	aGa	aAa	1	1	AY.103	0.000006
N	209	R209K	aGa	aAa	1	1	AY.119	0.000035
N	209	R209K	aGa	aAa	1	1	AY.12	0.000316
N	209	R209K	aGa	aAa	1	1	AY.20	0.000039
N	209	R209K	aGa	aAa	1	1	AY.39	0.000025
N	209	R209K	aGa	aAa	1	1	AY.4.5	0.000107
N	209	R209K	aGa	aAa	1	1	AY.61	0.000105
N	209	R209K	aGa	aAa	1	1	AY.75.1	0.00018
N	209	R209K	aGa	aAa	1	1	AY.98	0.000079
N	209	R209K	aGa	aAa	1	1	AY.99.2	0.000092
N	209	R209K	aGa	aAa	1	1	B.1.1.10	0.001115
N	209	R209K	aGa	aAa	1	1	B.1.1.129	0.009174
N	209	R209K	aGa	aAa	1	1	B.1.1.39	0.00051
N	209	R209K	aGa	aAa	1	1	B.1.1.464	0.001473
N	209	R209K	aGa	aAa	1	1	B.1.103	0.019231
N	209	R209K	aGa	aAa	1	1	B.1.111	0.001175
N	209	R209K	aGa	aAa	1	1	B.1.147	0.000756
N	209	R209K	aGa	aAa	1	1	B.1.177.10	0.000878
N	209	R209K	aGa	aAa	1	1	B.1.177.6	0.000977
N	209	R209K	aGa	aAa	1	1	B.1.177.65	0.000665
N	209	R209K	aGa	aAa	1	1	B.1.177.7	0.000165
N	209	R209K	aGa	aAa	1	1	B.1.177.73	0.000566
N	209	R209K	aGa	aAa	1	1	B.1.210	0.002132
N	209	R209K	aGa	aAa	1	1	B.1.214.2	0.0006
N	209	R209K	aGa	aAa	1	1	B.1.221.2	0.004016
N	209	R209K	aGa	aAa	1	1	B.1.223	0.002778
N	209	R209K	aGa	aAa	1	1	B.1.237	0.004975
N	209	R209K	aGa	aAa	1	1	B.1.240	0.000216
N	209	R209K	aGa	aAa	1	1	B.1.258	0.000067
N	209	R209K	aGa	aAa	1	1	B.1.281	0.021739
N	209	R209K	aGa	aAa	1	1	B.1.302	0.013333
N	209	R209K	aGa	aAa	1	1	B.1.338	0.008621
N	209	R209K	aGa	aAa	1	1	B.1.36	0.000146
N	209	R209K	aGa	aAa	1	1	B.1.36.17	0.000494
N	209	R209K	aGa	aAa	1	1	B.1.36.22	0.001208
N	209	R209K	aGa	aAa	1	1	B.1.36.36	0.000602
N	209	R209K	aGa	aAa	1	1	B.1.411	0.003704
N	209	R209K	aGa	aAa	1	1	B.1.429	0.000024
N	209	R209K	aGa	aAa	1	1	B.1.509	0.000866
N	209	R209K	aGa	aAa	1	1	B.1.521	0.004975
N	209	R209K	aGa	aAa	1	1	B.1.540	0.009709
N	209	R209K	aGa	aAa	1	1	B.1.549	0.007194
N	209	R209K	aGa	aAa	1	1	B.1.561	0.000397
N	209	R209K	aGa	aAa	1	1	B.1.564	0.000426
N	209	R209K	aGa	aAa	1	1	B.1.565	0.00081
N	209	R209K	aGa	aAa	1	1	B.1.566	0.019231
N	209	R209K	aGa	aAa	1	1	B.1.568	0.001111
N	209	R209K	aGa	aAa	1	1	B.1.581	0.009434
N	209	R209K	aGa	aAa	1	1	B.1.588	0.00091
N	209	R209K	aGa	aAa	1	1	B.1.590	0.004545
N	209	R209K	aGa	aAa	1	1	B.1.595	0.000261
N	209	R209K	aGa	aAa	1	1	B.1.609	0.000479
N	209	R209K	aGa	aAa	1	1	B.3	0.000831
N	209	R209K	aGa	aAa	1	1	B.31	0.003731
N	209	R209K	aGa	aAa	1	1	B.4	0.002208
N	209	R209K	aGa	aAa	1	1	P.1.16	0.000374
N	209	R209K	aGa	aAa	1	1	W.1	0.008696

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.