CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = N : Mut = R203del

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
N	203	R203del		del	AGG	---	1875	1875	1	28880-28882

Details of the mutation R203del within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
N	203	R203del	AGG	---	1875	1875	All	0.000359
N	203	R203del	AGG	---	517	517	B.1.1.7	0.000463
N	203	R203del	AGG	---	419	419	P.1	0.006601
N	203	R203del	AGG	---	129	129	P.1.12	0.062439
N	203	R203del	AGG	---	85	85	D.2	0.006379
N	203	R203del	AGG	---	60	60	B.1.617.2	0.000226
N	203	R203del	AGG	---	59	59	B.1	0.00054
N	203	R203del	AGG	---	46	46	AY.74	0.00532
N	203	R203del	AGG	---	36	36	P.1.17	0.005823
N	203	R203del	AGG	---	33	33	P.1.14	0.001577
N	203	R203del	AGG	---	29	29	AY.4	0.000045
N	203	R203del	AGG	---	27	27	AY.25	0.000162
N	203	R203del	AGG	---	27	27	P.1.15	0.006273
N	203	R203del	AGG	---	23	23	Q.2	0.01411
N	203	R203del	AGG	---	22	22	AY.52	0.017915
N	203	R203del	AGG	---	21	21	AY.100	0.000966
N	203	R203del	AGG	---	21	21	AY.4.2.1	0.003129
N	203	R203del	AGG	---	17	17	B.1.214	0.062271
N	203	R203del	AGG	---	15	15	AY.43	0.000066
N	203	R203del	AGG	---	14	14	P.1.1	0.004447
N	203	R203del	AGG	---	13	13	AY.103	0.000081
N	203	R203del	AGG	---	13	13	B.1.1.519	0.000516
N	203	R203del	AGG	---	12	12	AY.26	0.00034
N	203	R203del	AGG	---	12	12	AY.44	0.000073
N	203	R203del	AGG	---	12	12	AY.47	0.000373
N	203	R203del	AGG	---	9	9	AY.118	0.000564
N	203	R203del	AGG	---	9	9	AY.119	0.000318
N	203	R203del	AGG	---	9	9	AY.3	0.00009
N	203	R203del	AGG	---	9	9	AY.45	0.001095
N	203	R203del	AGG	---	8	8	P.1.16	0.002993
N	203	R203del	AGG	---	7	7	AY.23	0.000488
N	203	R203del	AGG	---	7	7	B.1.243	0.000487
N	203	R203del	AGG	---	7	7	B.1.526	0.000165
N	203	R203del	AGG	---	6	6	AY.75	0.000336
N	203	R203del	AGG	---	6	6	AY.85	0.002563
N	203	R203del	AGG	---	6	6	B.1.349	0.004289
N	203	R203del	AGG	---	5	5	AY.27	0.000324
N	203	R203del	AGG	---	5	5	B.1.617.1	0.000645
N	203	R203del	AGG	---	5	5	P.1.2	0.00578
N	203	R203del	AGG	---	4	4	AD.2	0.000876
N	203	R203del	AGG	---	4	4	AY.36	0.000593
N	203	R203del	AGG	---	4	4	AY.59	0.002119
N	203	R203del	AGG	---	4	4	AY.9.1	0.000335
N	203	R203del	AGG	---	4	4	AY.9.2	0.000147
N	203	R203del	AGG	---	4	4	B.1.1.222	0.000816
N	203	R203del	AGG	---	4	4	C.37	0.000464
N	203	R203del	AGG	---	4	4	P.1.10	0.001078
N	203	R203del	AGG	---	4	4	P.1.7	0.001277
N	203	R203del	AGG	---	3	3	AY.30	0.001187
N	203	R203del	AGG	---	3	3	AY.4.2	0.000065
N	203	R203del	AGG	---	3	3	AY.4.5	0.000322
N	203	R203del	AGG	---	3	3	B.1.36	0.000438
N	203	R203del	AGG	---	3	3	B.1.576	0.00272
N	203	R203del	AGG	---	2	2	AY.102	0.000053
N	203	R203del	AGG	---	2	2	AY.39	0.000049
N	203	R203del	AGG	---	2	2	AY.40	0.001929
N	203	R203del	AGG	---	2	2	AY.46	0.000208
N	203	R203del	AGG	---	2	2	AY.50	0.001599
N	203	R203del	AGG	---	2	2	AY.54	0.000191
N	203	R203del	AGG	---	2	2	AY.63	0.000774
N	203	R203del	AGG	---	2	2	AY.7.2	0.001119
N	203	R203del	AGG	---	2	2	B	0.000256
N	203	R203del	AGG	---	2	2	B.1.1	0.000036
N	203	R203del	AGG	---	2	2	B.1.1.25	0.001137
N	203	R203del	AGG	---	2	2	B.1.1.28	0.000622
N	203	R203del	AGG	---	2	2	B.1.2	0.000018
N	203	R203del	AGG	---	2	2	B.1.351	0.000059
N	203	R203del	AGG	---	1	1	A.1	0.000282
N	203	R203del	AGG	---	1	1	A.23.1	0.000704
N	203	R203del	AGG	---	1	1	AY.110	0.000113
N	203	R203del	AGG	---	1	1	AY.113	0.000142
N	203	R203del	AGG	---	1	1	AY.120	0.000037
N	203	R203del	AGG	---	1	1	AY.16	0.00038
N	203	R203del	AGG	---	1	1	AY.16.1	0.00047
N	203	R203del	AGG	---	1	1	AY.21	0.001898
N	203	R203del	AGG	---	1	1	AY.29	0.000016
N	203	R203del	AGG	---	1	1	AY.29.1	0.000221
N	203	R203del	AGG	---	1	1	AY.33	0.000067
N	203	R203del	AGG	---	1	1	AY.37	0.000316
N	203	R203del	AGG	---	1	1	AY.39.1	0.00004
N	203	R203del	AGG	---	1	1	AY.42	0.00004
N	203	R203del	AGG	---	1	1	AY.5	0.000021
N	203	R203del	AGG	---	1	1	AY.5.4	0.000277
N	203	R203del	AGG	---	1	1	AY.57	0.000656
N	203	R203del	AGG	---	1	1	AY.6	0.000041
N	203	R203del	AGG	---	1	1	AY.61	0.000105
N	203	R203del	AGG	---	1	1	AY.65	0.000533
N	203	R203del	AGG	---	1	1	AY.71	0.000475
N	203	R203del	AGG	---	1	1	AY.79	0.001211
N	203	R203del	AGG	---	1	1	AY.98.1	0.000048
N	203	R203del	AGG	---	1	1	B.1.1.1	0.000327
N	203	R203del	AGG	---	1	1	B.1.1.33	0.000421
N	203	R203del	AGG	---	1	1	B.1.1.432	0.001266
N	203	R203del	AGG	---	1	1	B.1.177	0.000013
N	203	R203del	AGG	---	1	1	B.1.258	0.000067
N	203	R203del	AGG	---	1	1	B.1.324	0.001605
N	203	R203del	AGG	---	1	1	B.1.427	0.00005
N	203	R203del	AGG	---	1	1	B.1.465	0.003802
N	203	R203del	AGG	---	1	1	B.1.525	0.000113
N	203	R203del	AGG	---	1	1	B.1.596	0.000087
N	203	R203del	AGG	---	1	1	C.37.1	0.002618
N	203	R203del	AGG	---	1	1	P.1.13	0.000898
N	203	R203del	AGG	---	1	1	P.1.8	0.004785

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.