CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
N | 9 | Q9H | nonsyn | caG | caT | 13573 | 12369 | 0.911294 | 28298-28300 | |
N | 9 | Q9H | nonsyn | caG | caC | 13573 | 1204 | 0.0887055 | 28298-28300 |
Details of the mutation Q9H within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
N | 9 | Q9H | caG | caT | 12369 | 13573 | All | 0.002366 |
N | 9 | Q9H | caG | caC | 1204 | 13573 | All | 0.00023 |
N | 9 | Q9H | caG | caT | 3123 | 3123 | B.1.311 | 0.857496 |
N | 9 | Q9H | caG | caT | 1244 | 1255 | AY.4 | 0.001936 |
N | 9 | Q9H | caG | caC | 11 | 1255 | AY.4 | 0.000017 |
N | 9 | Q9H | caG | caT | 1027 | 1128 | AY.3 | 0.010215 |
N | 9 | Q9H | caG | caC | 101 | 1128 | AY.3 | 0.001005 |
N | 9 | Q9H | caG | caT | 982 | 983 | AY.26 | 0.027801 |
N | 9 | Q9H | caG | caC | 1 | 983 | AY.26 | 0.000028 |
N | 9 | Q9H | caG | caC | 664 | 664 | AP.1 | 0.996997 |
N | 9 | Q9H | caG | caT | 611 | 612 | B.1.1.37 | 0.11784 |
N | 9 | Q9H | caG | caC | 1 | 612 | B.1.1.37 | 0.000193 |
N | 9 | Q9H | caG | caT | 527 | 527 | B.1.351 | 0.015666 |
N | 9 | Q9H | caG | caT | 394 | 419 | B.1.1.7 | 0.000353 |
N | 9 | Q9H | caG | caC | 25 | 419 | B.1.1.7 | 0.000022 |
N | 9 | Q9H | caG | caT | 263 | 294 | B.1.617.2 | 0.00099 |
N | 9 | Q9H | caG | caC | 31 | 294 | B.1.617.2 | 0.000117 |
N | 9 | Q9H | caG | caT | 141 | 282 | AY.44 | 0.000858 |
N | 9 | Q9H | caG | caC | 141 | 282 | AY.44 | 0.000858 |
N | 9 | Q9H | caG | caT | 228 | 250 | B.1 | 0.002088 |
N | 9 | Q9H | caG | caC | 22 | 250 | B.1 | 0.000202 |
N | 9 | Q9H | caG | caT | 236 | 236 | B.1.221.4 | 0.983333 |
N | 9 | Q9H | caG | caT | 233 | 233 | B.1.1.222 | 0.047532 |
N | 9 | Q9H | caG | caT | 216 | 216 | B.1.377 | 0.986301 |
N | 9 | Q9H | caG | caT | 174 | 190 | AY.103 | 0.00108 |
N | 9 | Q9H | caG | caC | 16 | 190 | AY.103 | 0.000099 |
N | 9 | Q9H | caG | caT | 173 | 177 | AY.25 | 0.001041 |
N | 9 | Q9H | caG | caC | 4 | 177 | AY.25 | 0.000024 |
N | 9 | Q9H | caG | caT | 158 | 158 | AY.4.5 | 0.016984 |
N | 9 | Q9H | caG | caT | 138 | 156 | B.1.177 | 0.001817 |
N | 9 | Q9H | caG | caC | 18 | 156 | B.1.177 | 0.000237 |
N | 9 | Q9H | caG | caT | 128 | 138 | B.1.1 | 0.002322 |
N | 9 | Q9H | caG | caC | 10 | 138 | B.1.1 | 0.000181 |
N | 9 | Q9H | caG | caT | 122 | 128 | B.1.2 | 0.001074 |
N | 9 | Q9H | caG | caC | 6 | 128 | B.1.2 | 0.000053 |
N | 9 | Q9H | caG | caT | 116 | 116 | B.1.561 | 0.04605 |
N | 9 | Q9H | caG | caT | 103 | 103 | AY.39 | 0.002545 |
N | 9 | Q9H | caG | caC | 73 | 86 | B.1.1.70 | 0.024898 |
N | 9 | Q9H | caG | caT | 13 | 86 | B.1.1.70 | 0.004434 |
N | 9 | Q9H | caG | caT | 84 | 84 | B.1.1.519 | 0.003336 |
N | 9 | Q9H | caG | caT | 70 | 70 | AY.102 | 0.001856 |
N | 9 | Q9H | caG | caT | 58 | 60 | B.1.234 | 0.007653 |
N | 9 | Q9H | caG | caC | 2 | 60 | B.1.234 | 0.000264 |
N | 9 | Q9H | caG | caT | 57 | 57 | B.1.243 | 0.003966 |
N | 9 | Q9H | caG | caT | 54 | 54 | B.1.160 | 0.001684 |
N | 9 | Q9H | caG | caT | 52 | 52 | AY.120 | 0.001933 |
N | 9 | Q9H | caG | caT | 51 | 51 | AY.43 | 0.000226 |
N | 9 | Q9H | caG | caT | 49 | 50 | AY.5 | 0.001012 |
N | 9 | Q9H | caG | caC | 1 | 50 | AY.5 | 0.000021 |
N | 9 | Q9H | caG | caT | 50 | 50 | B.1.591 | 0.531915 |
N | 9 | Q9H | caG | caT | 41 | 44 | AY.47 | 0.001275 |
N | 9 | Q9H | caG | caC | 3 | 44 | AY.47 | 0.000093 |
N | 9 | Q9H | caG | caT | 44 | 44 | B.1.429 | 0.001035 |
N | 9 | Q9H | caG | caT | 44 | 44 | B.1.466.2 | 0.017214 |
N | 9 | Q9H | caG | caT | 41 | 44 | P.1 | 0.000646 |
N | 9 | Q9H | caG | caC | 3 | 44 | P.1 | 0.000047 |
N | 9 | Q9H | caG | caT | 37 | 37 | AY.33 | 0.002471 |
N | 9 | Q9H | caG | caT | 36 | 36 | B.1.637 | 0.002631 |
N | 9 | Q9H | caG | caT | 35 | 35 | P.2 | 0.006532 |
N | 9 | Q9H | caG | caT | 32 | 32 | P.1.14 | 0.00153 |
N | 9 | Q9H | caG | caT | 27 | 27 | AY.20 | 0.001049 |
N | 9 | Q9H | caG | caT | 27 | 27 | AY.98.1 | 0.001308 |
N | 9 | Q9H | caG | caT | 24 | 25 | B.1.177.86 | 0.004403 |
N | 9 | Q9H | caG | caC | 1 | 25 | B.1.177.86 | 0.000183 |
N | 9 | Q9H | caG | caT | 25 | 25 | R.1 | 0.00225 |
N | 9 | Q9H | caG | caT | 23 | 24 | B.1.396 | 0.016231 |
N | 9 | Q9H | caG | caC | 1 | 24 | B.1.396 | 0.000706 |
N | 9 | Q9H | caG | caT | 23 | 23 | B.1.36 | 0.003356 |
N | 9 | Q9H | caG | caT | 22 | 22 | B.1.177.75 | 0.022893 |
N | 9 | Q9H | caG | caT | 21 | 21 | AY.4.2 | 0.000455 |
N | 9 | Q9H | caG | caC | 15 | 21 | AY.69 | 0.0028 |
N | 9 | Q9H | caG | caT | 6 | 21 | AY.69 | 0.00112 |
N | 9 | Q9H | caG | caT | 18 | 21 | B.1.526 | 0.000423 |
N | 9 | Q9H | caG | caC | 3 | 21 | B.1.526 | 0.000071 |
N | 9 | Q9H | caG | caT | 19 | 20 | B.1.596 | 0.001656 |
N | 9 | Q9H | caG | caC | 1 | 20 | B.1.596 | 0.000087 |
N | 9 | Q9H | caG | caT | 19 | 19 | B.1.1.170 | 0.023691 |
N | 9 | Q9H | caG | caT | 19 | 19 | B.1.177.82 | 0.009069 |
N | 9 | Q9H | caG | caT | 17 | 18 | AY.61 | 0.001781 |
N | 9 | Q9H | caG | caC | 1 | 18 | AY.61 | 0.000105 |
N | 9 | Q9H | caG | caT | 15 | 17 | AY.100 | 0.00069 |
N | 9 | Q9H | caG | caC | 2 | 17 | AY.100 | 0.000092 |
N | 9 | Q9H | caG | caT | 16 | 17 | AY.29 | 0.000252 |
N | 9 | Q9H | caG | caC | 1 | 17 | AY.29 | 0.000016 |
N | 9 | Q9H | caG | caT | 15 | 17 | AY.45 | 0.001825 |
N | 9 | Q9H | caG | caC | 2 | 17 | AY.45 | 0.000243 |
N | 9 | Q9H | caG | caT | 17 | 17 | AY.73 | 0.011311 |
N | 9 | Q9H | caG | caT | 17 | 17 | AY.9.1 | 0.001423 |
N | 9 | Q9H | caG | caT | 17 | 17 | B.1.1.33 | 0.007155 |
N | 9 | Q9H | caG | caT | 15 | 16 | B.1.1.214 | 0.000832 |
N | 9 | Q9H | caG | caC | 1 | 16 | B.1.1.214 | 0.000055 |
N | 9 | Q9H | caG | caT | 15 | 15 | AY.23 | 0.001046 |
N | 9 | Q9H | caG | caT | 15 | 15 | B.1.177.16 | 0.009967 |
N | 9 | Q9H | caG | caT | 14 | 14 | AY.113 | 0.001993 |
N | 9 | Q9H | caG | caT | 14 | 14 | AY.46 | 0.001457 |
N | 9 | Q9H | caG | caT | 14 | 14 | AY.75 | 0.000784 |
N | 9 | Q9H | caG | caT | 14 | 14 | B.1.1.28 | 0.004357 |
N | 9 | Q9H | caG | caT | 14 | 14 | B.1.177.4 | 0.002955 |
N | 9 | Q9H | caG | caT | 14 | 14 | B.1.565 | 0.011345 |
N | 9 | Q9H | caG | caT | 13 | 13 | AY.42 | 0.000523 |
N | 9 | Q9H | caG | caT | 13 | 13 | AY.7 | 0.002548 |
N | 9 | Q9H | caG | caT | 13 | 13 | B.1.1.50 | 0.008826 |
N | 9 | Q9H | caG | caT | 11 | 13 | B.1.36.29 | 0.005691 |
N | 9 | Q9H | caG | caC | 2 | 13 | B.1.36.29 | 0.001035 |
N | 9 | Q9H | caG | caT | 12 | 12 | AY.3.1 | 0.001023 |
N | 9 | Q9H | caG | caT | 12 | 12 | AY.89 | 0.058824 |
N | 9 | Q9H | caG | caT | 9 | 11 | AY.54 | 0.000858 |
N | 9 | Q9H | caG | caC | 2 | 11 | AY.54 | 0.000191 |
N | 9 | Q9H | caG | caT | 11 | 11 | AY.9.2 | 0.000404 |
N | 9 | Q9H | caG | caT | 11 | 11 | B.1.1.25 | 0.006254 |
N | 9 | Q9H | caG | caT | 10 | 10 | B.1.188 | 0.166667 |
N | 9 | Q9H | caG | caT | 10 | 10 | B.1.391 | 0.011274 |
N | 9 | Q9H | caG | caT | 6 | 9 | AY.121 | 0.000812 |
N | 9 | Q9H | caG | caC | 3 | 9 | AY.121 | 0.000406 |
N | 9 | Q9H | caG | caT | 8 | 9 | AY.39.1 | 0.000317 |
N | 9 | Q9H | caG | caC | 1 | 9 | AY.39.1 | 0.00004 |
N | 9 | Q9H | caG | caT | 9 | 9 | AY.46.6 | 0.00065 |
N | 9 | Q9H | caG | caT | 9 | 9 | AY.62 | 0.003922 |
N | 9 | Q9H | caG | caT | 9 | 9 | AY.99.2 | 0.000829 |
N | 9 | Q9H | caG | caT | 9 | 9 | B.1.1.317 | 0.003705 |
N | 9 | Q9H | caG | caT | 9 | 9 | B.1.177.73 | 0.005096 |
N | 9 | Q9H | caG | caT | 8 | 9 | B.1.258 | 0.000532 |
N | 9 | Q9H | caG | caC | 1 | 9 | B.1.258 | 0.000067 |
N | 9 | Q9H | caG | caT | 9 | 9 | B.1.427 | 0.000454 |
N | 9 | Q9H | caG | caT | 9 | 9 | B.4.7 | 0.090909 |
N | 9 | Q9H | caG | caT | 9 | 9 | C.30 | 0.015544 |
N | 9 | Q9H | caG | caT | 8 | 8 | AY.6 | 0.000329 |
N | 9 | Q9H | caG | caT | 8 | 8 | B.1.1.189 | 0.012103 |
N | 9 | Q9H | caG | caT | 8 | 8 | B.1.1.305 | 0.030888 |
N | 9 | Q9H | caG | caT | 8 | 8 | B.1.221 | 0.000568 |
N | 9 | Q9H | caG | caT | 8 | 8 | P.1.4 | 0.007812 |
N | 9 | Q9H | caG | caT | 7 | 7 | B.1.1.1 | 0.002287 |
N | 9 | Q9H | caG | caT | 7 | 7 | B.1.1.284 | 0.000752 |
N | 9 | Q9H | caG | caT | 7 | 7 | B.1.177.21 | 0.000535 |
N | 9 | Q9H | caG | caT | 7 | 7 | B.1.595 | 0.001827 |
N | 9 | Q9H | caG | caT | 6 | 6 | A.27 | 0.009934 |
N | 9 | Q9H | caG | caT | 6 | 6 | AY.16 | 0.002278 |
N | 9 | Q9H | caG | caC | 5 | 6 | AY.27 | 0.000324 |
N | 9 | Q9H | caG | caT | 1 | 6 | AY.27 | 0.000065 |
N | 9 | Q9H | caG | caT | 6 | 6 | AY.59 | 0.003178 |
N | 9 | Q9H | caG | caT | 6 | 6 | AZ.2 | 0.004926 |
N | 9 | Q9H | caG | caT | 5 | 6 | B.1.617.1 | 0.000645 |
N | 9 | Q9H | caG | caC | 1 | 6 | B.1.617.1 | 0.000129 |
N | 9 | Q9H | caG | caT | 5 | 6 | D.2 | 0.000375 |
N | 9 | Q9H | caG | caC | 1 | 6 | D.2 | 0.000075 |
N | 9 | Q9H | caG | caT | 5 | 5 | AY.116 | 0.001434 |
N | 9 | Q9H | caG | caT | 4 | 5 | AY.117 | 0.000338 |
N | 9 | Q9H | caG | caC | 1 | 5 | AY.117 | 0.000085 |
N | 9 | Q9H | caG | caT | 5 | 5 | AY.118 | 0.000313 |
N | 9 | Q9H | caG | caT | 5 | 5 | AY.24 | 0.002155 |
N | 9 | Q9H | caG | caT | 5 | 5 | AY.51 | 0.004545 |
N | 9 | Q9H | caG | caT | 5 | 5 | AY.93 | 0.001365 |
N | 9 | Q9H | caG | caT | 5 | 5 | B.1.1.326 | 0.008803 |
N | 9 | Q9H | caG | caT | 5 | 5 | B.1.279 | 0.002568 |
N | 9 | Q9H | caG | caT | 5 | 5 | B.1.625 | 0.011765 |
N | 9 | Q9H | caG | caT | 5 | 5 | C.16 | 0.005302 |
N | 9 | Q9H | caG | caT | 4 | 4 | AY.105 | 0.002572 |
N | 9 | Q9H | caG | caC | 2 | 4 | AY.110 | 0.000225 |
N | 9 | Q9H | caG | caT | 2 | 4 | AY.110 | 0.000225 |
N | 9 | Q9H | caG | caT | 4 | 4 | AY.119 | 0.000141 |
N | 9 | Q9H | caG | caT | 4 | 4 | AY.12 | 0.001264 |
N | 9 | Q9H | caG | caT | 4 | 4 | AY.75.1 | 0.000721 |
N | 9 | Q9H | caG | caT | 4 | 4 | B | 0.000511 |
N | 9 | Q9H | caG | caT | 4 | 4 | B.1.1.219 | 0.02 |
N | 9 | Q9H | caG | caT | 4 | 4 | B.1.1.63 | 0.001543 |
N | 9 | Q9H | caG | caT | 3 | 4 | B.1.177.7 | 0.000495 |
N | 9 | Q9H | caG | caC | 1 | 4 | B.1.177.7 | 0.000165 |
N | 9 | Q9H | caG | caT | 4 | 4 | B.1.367 | 0.00317 |
N | 9 | Q9H | caG | caT | 4 | 4 | B.1.404 | 0.005208 |
N | 9 | Q9H | caG | caT | 3 | 4 | B.1.621 | 0.000266 |
N | 9 | Q9H | caG | caC | 1 | 4 | B.1.621 | 0.000089 |
N | 9 | Q9H | caG | caT | 4 | 4 | P.1.15 | 0.000929 |
N | 9 | Q9H | caG | caT | 2 | 3 | AY.10 | 0.00106 |
N | 9 | Q9H | caG | caC | 1 | 3 | AY.10 | 0.00053 |
N | 9 | Q9H | caG | caT | 3 | 3 | AY.106 | 0.001005 |
N | 9 | Q9H | caG | caT | 3 | 3 | AY.111 | 0.000549 |
N | 9 | Q9H | caG | caT | 3 | 3 | AY.36 | 0.000445 |
N | 9 | Q9H | caG | caT | 3 | 3 | AY.5.4 | 0.00083 |
N | 9 | Q9H | caG | caT | 3 | 3 | AY.68 | 0.000821 |
N | 9 | Q9H | caG | caC | 2 | 3 | AY.9 | 0.000135 |
N | 9 | Q9H | caG | caT | 1 | 3 | AY.9 | 0.000068 |
N | 9 | Q9H | caG | caT | 3 | 3 | B.1.1.141 | 0.006036 |
N | 9 | Q9H | caG | caT | 3 | 3 | B.1.1.204 | 0.009119 |
N | 9 | Q9H | caG | caT | 3 | 3 | B.1.1.306 | 0.001315 |
N | 9 | Q9H | caG | caT | 3 | 3 | B.1.1.409 | 0.008499 |
N | 9 | Q9H | caG | caT | 3 | 3 | B.1.139 | 0.002199 |
N | 9 | Q9H | caG | caT | 3 | 3 | B.1.189 | 0.012876 |
N | 9 | Q9H | caG | caT | 3 | 3 | B.1.240 | 0.000647 |
N | 9 | Q9H | caG | caT | 3 | 3 | B.1.369 | 0.000856 |
N | 9 | Q9H | caG | caT | 3 | 3 | B.1.609 | 0.001438 |
N | 9 | Q9H | caG | caT | 3 | 3 | B.1.618 | 0.012097 |
N | 9 | Q9H | caG | caT | 3 | 3 | B.6 | 0.00273 |
N | 9 | Q9H | caG | caT | 3 | 3 | N.4 | 0.012766 |
N | 9 | Q9H | caG | caT | 3 | 3 | P.1.7 | 0.000958 |
N | 9 | Q9H | caG | caT | 2 | 3 | Q.8 | 0.00033 |
N | 9 | Q9H | caG | caC | 1 | 3 | Q.8 | 0.000165 |
N | 9 | Q9H | caG | caT | 2 | 2 | AY.1 | 0.000791 |
N | 9 | Q9H | caG | caT | 2 | 2 | AY.14 | 0.000176 |
N | 9 | Q9H | caG | caT | 2 | 2 | AY.17 | 0.016393 |
N | 9 | Q9H | caG | caT | 2 | 2 | AY.34 | 0.000194 |
N | 9 | Q9H | caG | caT | 2 | 2 | AY.38 | 0.000999 |
N | 9 | Q9H | caG | caT | 2 | 2 | AY.46.2 | 0.001271 |
N | 9 | Q9H | caG | caT | 2 | 2 | AY.49 | 0.00639 |
N | 9 | Q9H | caG | caT | 2 | 2 | AY.5.3 | 0.000675 |
N | 9 | Q9H | caG | caT | 2 | 2 | AY.55 | 0.001835 |
N | 9 | Q9H | caG | caT | 2 | 2 | AY.99.1 | 0.003106 |
N | 9 | Q9H | caG | caC | 1 | 2 | B.1.1.161 | 0.003534 |
N | 9 | Q9H | caG | caT | 1 | 2 | B.1.1.161 | 0.003534 |
N | 9 | Q9H | caG | caT | 2 | 2 | B.1.1.174 | 0.006757 |
N | 9 | Q9H | caG | caT | 1 | 2 | B.1.1.216 | 0.00089 |
N | 9 | Q9H | caG | caC | 1 | 2 | B.1.1.216 | 0.00089 |
N | 9 | Q9H | caG | caT | 2 | 2 | B.1.1.283 | 0.046512 |
N | 9 | Q9H | caG | caT | 2 | 2 | B.1.1.291 | 0.001485 |
N | 9 | Q9H | caG | caT | 2 | 2 | B.1.1.294 | 0.002532 |
N | 9 | Q9H | caG | caT | 2 | 2 | B.1.1.318 | 0.000604 |
N | 9 | Q9H | caG | caT | 2 | 2 | B.1.119 | 0.021053 |
N | 9 | Q9H | caG | caT | 2 | 2 | B.1.177.44 | 0.001038 |
N | 9 | Q9H | caG | caC | 1 | 2 | B.1.177.57 | 0.000281 |
N | 9 | Q9H | caG | caT | 1 | 2 | B.1.177.57 | 0.000281 |
N | 9 | Q9H | caG | caT | 2 | 2 | B.1.177.6 | 0.001953 |
N | 9 | Q9H | caG | caT | 2 | 2 | B.1.241 | 0.001623 |
N | 9 | Q9H | caG | caT | 2 | 2 | B.1.260 | 0.006689 |
N | 9 | Q9H | caG | caC | 2 | 2 | B.1.329 | 0.001215 |
N | 9 | Q9H | caG | caT | 2 | 2 | B.1.349 | 0.00143 |
N | 9 | Q9H | caG | caC | 1 | 2 | B.1.36.18 | 0.00042 |
N | 9 | Q9H | caG | caT | 1 | 2 | B.1.36.18 | 0.00042 |
N | 9 | Q9H | caG | caT | 2 | 2 | B.1.36.19 | 0.018519 |
N | 9 | Q9H | caG | caT | 2 | 2 | B.1.36.26 | 0.005714 |
N | 9 | Q9H | caG | caT | 2 | 2 | B.1.36.37 | 0.005556 |
N | 9 | Q9H | caG | caT | 2 | 2 | B.1.397 | 0.009709 |
N | 9 | Q9H | caG | caT | 2 | 2 | B.1.466.1 | 0.014388 |
N | 9 | Q9H | caG | caT | 2 | 2 | B.1.470 | 0.002809 |
N | 9 | Q9H | caG | caT | 2 | 2 | B.1.549 | 0.014388 |
N | 9 | Q9H | caG | caT | 2 | 2 | B.1.577 | 0.001375 |
N | 9 | Q9H | caG | caT | 2 | 2 | B.1.582 | 0.000981 |
N | 9 | Q9H | caG | caT | 2 | 2 | B.1.587 | 0.003795 |
N | 9 | Q9H | caG | caT | 2 | 2 | B.1.597 | 0.009259 |
N | 9 | Q9H | caG | caT | 2 | 2 | B.1.612 | 0.005305 |
N | 9 | Q9H | caG | caT | 2 | 2 | B.3 | 0.001661 |
N | 9 | Q9H | caG | caT | 2 | 2 | B.40 | 0.000729 |
N | 9 | Q9H | caG | caT | 2 | 2 | C.36 | 0.001821 |
N | 9 | Q9H | caG | caT | 2 | 2 | P.1.10 | 0.000539 |
N | 9 | Q9H | caG | caT | 2 | 2 | Q.3 | 0.00029 |
N | 9 | Q9H | caG | caT | 1 | 1 | A | 0.000387 |
N | 9 | Q9H | caG | caT | 1 | 1 | A.1 | 0.000282 |
N | 9 | Q9H | caG | caT | 1 | 1 | A.2.5 | 0.000499 |
N | 9 | Q9H | caG | caT | 1 | 1 | A.2.5.3 | 0.010309 |
N | 9 | Q9H | caG | caT | 1 | 1 | A.26 | 0.076923 |
N | 9 | Q9H | caG | caT | 1 | 1 | AD.2 | 0.000219 |
N | 9 | Q9H | caG | caT | 1 | 1 | AE.3 | 0.032258 |
N | 9 | Q9H | caG | caC | 1 | 1 | AS.2 | 0.015625 |
N | 9 | Q9H | caG | caT | 1 | 1 | AU.2 | 0.002421 |
N | 9 | Q9H | caG | caT | 1 | 1 | AY.114 | 0.000231 |
N | 9 | Q9H | caG | caT | 1 | 1 | AY.120.1 | 0.000321 |
N | 9 | Q9H | caG | caT | 1 | 1 | AY.120.2 | 0.001285 |
N | 9 | Q9H | caG | caT | 1 | 1 | AY.19 | 0.00114 |
N | 9 | Q9H | caG | caT | 1 | 1 | AY.34.1 | 0.00051 |
N | 9 | Q9H | caG | caT | 1 | 1 | AY.39.2 | 0.001541 |
N | 9 | Q9H | caG | caT | 1 | 1 | AY.4.4 | 0.000409 |
N | 9 | Q9H | caG | caT | 1 | 1 | AY.40 | 0.000964 |
N | 9 | Q9H | caG | caT | 1 | 1 | AY.46.4 | 0.000165 |
N | 9 | Q9H | caG | caT | 1 | 1 | AY.5.1 | 0.003759 |
N | 9 | Q9H | caG | caC | 1 | 1 | AY.53 | 0.000288 |
N | 9 | Q9H | caG | caT | 1 | 1 | AY.58 | 0.000907 |
N | 9 | Q9H | caG | caT | 1 | 1 | AY.60 | 0.000938 |
N | 9 | Q9H | caG | caT | 1 | 1 | AY.63 | 0.000387 |
N | 9 | Q9H | caG | caT | 1 | 1 | AY.64 | 0.000595 |
N | 9 | Q9H | caG | caT | 1 | 1 | AY.65 | 0.000533 |
N | 9 | Q9H | caG | caT | 1 | 1 | AY.67 | 0.000464 |
N | 9 | Q9H | caG | caT | 1 | 1 | AY.71 | 0.000475 |
N | 9 | Q9H | caG | caC | 1 | 1 | AY.8 | 0.000606 |
N | 9 | Q9H | caG | caT | 1 | 1 | AY.86 | 0.00083 |
N | 9 | Q9H | caG | caT | 1 | 1 | AY.91 | 0.00073 |
N | 9 | Q9H | caG | caC | 1 | 1 | AY.95 | 0.000761 |
N | 9 | Q9H | caG | caT | 1 | 1 | AZ.2.1 | 0.00813 |
N | 9 | Q9H | caG | caT | 1 | 1 | AZ.4 | 0.003356 |
N | 9 | Q9H | caG | caT | 1 | 1 | B.1.1.111 | 0.014706 |
N | 9 | Q9H | caG | caT | 1 | 1 | B.1.1.128 | 0.007092 |
N | 9 | Q9H | caG | caT | 1 | 1 | B.1.1.160 | 0.02381 |
N | 9 | Q9H | caG | caT | 1 | 1 | B.1.1.176 | 0.000439 |
N | 9 | Q9H | caG | caT | 1 | 1 | B.1.1.198 | 0.001468 |
N | 9 | Q9H | caG | caT | 1 | 1 | B.1.1.208 | 0.012195 |
N | 9 | Q9H | caG | caT | 1 | 1 | B.1.1.224 | 0.014286 |
N | 9 | Q9H | caG | caC | 1 | 1 | B.1.1.269 | 0.001353 |
N | 9 | Q9H | caG | caT | 1 | 1 | B.1.1.27 | 0.00565 |
N | 9 | Q9H | caG | caT | 1 | 1 | B.1.1.277 | 0.000759 |
N | 9 | Q9H | caG | caT | 1 | 1 | B.1.1.304 | 0.002809 |
N | 9 | Q9H | caG | caT | 1 | 1 | B.1.1.31 | 0.066667 |
N | 9 | Q9H | caG | caT | 1 | 1 | B.1.1.312 | 0.001912 |
N | 9 | Q9H | caG | caT | 1 | 1 | B.1.1.319 | 0.017544 |
N | 9 | Q9H | caG | caT | 1 | 1 | B.1.1.322 | 0.008772 |
N | 9 | Q9H | caG | caT | 1 | 1 | B.1.1.354 | 0.004386 |
N | 9 | Q9H | caG | caT | 1 | 1 | B.1.1.389 | 0.006061 |
N | 9 | Q9H | caG | caT | 1 | 1 | B.1.1.398 | 0.003226 |
N | 9 | Q9H | caG | caT | 1 | 1 | B.1.1.411 | 0.014706 |
N | 9 | Q9H | caG | caT | 1 | 1 | B.1.1.412 | 0.007634 |
N | 9 | Q9H | caG | caT | 1 | 1 | B.1.1.450 | 0.034483 |
N | 9 | Q9H | caG | caT | 1 | 1 | B.1.1.47 | 0.005348 |
N | 9 | Q9H | caG | caT | 1 | 1 | B.1.1.486 | 0.001577 |
N | 9 | Q9H | caG | caT | 1 | 1 | B.1.1.500 | 0.02 |
N | 9 | Q9H | caG | caT | 1 | 1 | B.1.1.51 | 0.001718 |
N | 9 | Q9H | caG | caT | 1 | 1 | B.1.1.526 | 0.003546 |
N | 9 | Q9H | caG | caT | 1 | 1 | B.1.110.3 | 0.000718 |
N | 9 | Q9H | caG | caC | 1 | 1 | B.1.126 | 0.001276 |
N | 9 | Q9H | caG | caC | 1 | 1 | B.1.142 | 0.002899 |
N | 9 | Q9H | caG | caT | 1 | 1 | B.1.157 | 0.002985 |
N | 9 | Q9H | caG | caT | 1 | 1 | B.1.160.16 | 0.000929 |
N | 9 | Q9H | caG | caT | 1 | 1 | B.1.160.26 | 0.002421 |
N | 9 | Q9H | caG | caT | 1 | 1 | B.1.177.54 | 0.000606 |
N | 9 | Q9H | caG | caT | 1 | 1 | B.1.177.62 | 0.001192 |
N | 9 | Q9H | caG | caT | 1 | 1 | B.1.177.81 | 0.000189 |
N | 9 | Q9H | caG | caT | 1 | 1 | B.1.177.83 | 0.001481 |
N | 9 | Q9H | caG | caT | 1 | 1 | B.1.219 | 0.009434 |
N | 9 | Q9H | caG | caC | 1 | 1 | B.1.220 | 0.01087 |
N | 9 | Q9H | caG | caT | 1 | 1 | B.1.227 | 0.047619 |
N | 9 | Q9H | caG | caT | 1 | 1 | B.1.232 | 0.000537 |
N | 9 | Q9H | caG | caT | 1 | 1 | B.1.239 | 0.001221 |
N | 9 | Q9H | caG | caT | 1 | 1 | B.1.258.11 | 0.000396 |
N | 9 | Q9H | caG | caT | 1 | 1 | B.1.258.17 | 0.000104 |
N | 9 | Q9H | caG | caT | 1 | 1 | B.1.258.7 | 0.001912 |
N | 9 | Q9H | caG | caT | 1 | 1 | B.1.265 | 0.001271 |
N | 9 | Q9H | caG | caT | 1 | 1 | B.1.320 | 0.001245 |
N | 9 | Q9H | caG | caT | 1 | 1 | B.1.324 | 0.001605 |
N | 9 | Q9H | caG | caT | 1 | 1 | B.1.326 | 0.007576 |
N | 9 | Q9H | caG | caT | 1 | 1 | B.1.328 | 0.03125 |
N | 9 | Q9H | caG | caT | 1 | 1 | B.1.356 | 0.001727 |
N | 9 | Q9H | caG | caT | 1 | 1 | B.1.36.31 | 0.001751 |
N | 9 | Q9H | caG | caT | 1 | 1 | B.1.36.36 | 0.000602 |
N | 9 | Q9H | caG | caC | 1 | 1 | B.1.362 | 0.001541 |
N | 9 | Q9H | caG | caT | 1 | 1 | B.1.398 | 0.002976 |
N | 9 | Q9H | caG | caT | 1 | 1 | B.1.416.1 | 0.001563 |
N | 9 | Q9H | caG | caT | 1 | 1 | B.1.422 | 0.000812 |
N | 9 | Q9H | caG | caT | 1 | 1 | B.1.425 | 0.002994 |
N | 9 | Q9H | caG | caT | 1 | 1 | B.1.428 | 0.00102 |
N | 9 | Q9H | caG | caT | 1 | 1 | B.1.433 | 0.003195 |
N | 9 | Q9H | caG | caC | 1 | 1 | B.1.438.1 | 0.000107 |
N | 9 | Q9H | caG | caT | 1 | 1 | B.1.439 | 0.005917 |
N | 9 | Q9H | caG | caT | 1 | 1 | B.1.450 | 0.011364 |
N | 9 | Q9H | caG | caT | 1 | 1 | B.1.459 | 0.004082 |
N | 9 | Q9H | caG | caT | 1 | 1 | B.1.467 | 0.04 |
N | 9 | Q9H | caG | caT | 1 | 1 | B.1.503 | 0.002488 |
N | 9 | Q9H | caG | caT | 1 | 1 | B.1.505 | 0.004386 |
N | 9 | Q9H | caG | caT | 1 | 1 | B.1.510 | 0.026316 |
N | 9 | Q9H | caG | caT | 1 | 1 | B.1.524 | 0.001406 |
N | 9 | Q9H | caG | caT | 1 | 1 | B.1.525 | 0.000113 |
N | 9 | Q9H | caG | caT | 1 | 1 | B.1.550 | 0.013699 |
N | 9 | Q9H | caG | caT | 1 | 1 | B.1.551 | 0.00129 |
N | 9 | Q9H | caG | caT | 1 | 1 | B.1.560 | 0.00463 |
N | 9 | Q9H | caG | caT | 1 | 1 | B.1.564 | 0.000426 |
N | 9 | Q9H | caG | caT | 1 | 1 | B.1.588 | 0.00091 |
N | 9 | Q9H | caG | caT | 1 | 1 | B.1.595.1 | 0.005848 |
N | 9 | Q9H | caG | caT | 1 | 1 | B.1.600 | 0.005848 |
N | 9 | Q9H | caG | caT | 1 | 1 | B.1.623 | 0.000536 |
N | 9 | Q9H | caG | caT | 1 | 1 | B.1.9.5 | 0.005682 |
N | 9 | Q9H | caG | caC | 1 | 1 | B.1.93 | 0.000934 |
N | 9 | Q9H | caG | caT | 1 | 1 | B.3.1 | 0.001658 |
N | 9 | Q9H | caG | caT | 1 | 1 | B.4.5 | 0.011905 |
N | 9 | Q9H | caG | caT | 1 | 1 | C.27 | 0.018519 |
N | 9 | Q9H | caG | caT | 1 | 1 | C.36.2 | 0.034483 |
N | 9 | Q9H | caG | caT | 1 | 1 | C.37 | 0.000116 |
N | 9 | Q9H | caG | caT | 1 | 1 | C.37.1 | 0.002618 |
N | 9 | Q9H | caG | caT | 1 | 1 | C.9 | 0.030303 |
N | 9 | Q9H | caG | caC | 1 | 1 | L.3 | 0.003546 |
N | 9 | Q9H | caG | caT | 1 | 1 | P.3 | 0.001595 |
N | 9 | Q9H | caG | caT | 1 | 1 | P.4 | 0.003802 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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