CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
N | 7 | Q7K | nonsyn | Caa | Aaa | 4548 | 4548 | 1 | 28292-28294 |
Details of the mutation Q7K within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
N | 7 | Q7K | Caa | Aaa | 4548 | 4548 | All | 0.00087 |
N | 7 | Q7K | Caa | Aaa | 1642 | 1642 | B.1.36.36 | 0.988561 |
N | 7 | Q7K | Caa | Aaa | 463 | 463 | AY.4 | 0.000721 |
N | 7 | Q7K | Caa | Aaa | 396 | 396 | AY.6 | 0.016287 |
N | 7 | Q7K | Caa | Aaa | 159 | 159 | B.1.160 | 0.004959 |
N | 7 | Q7K | Caa | Aaa | 137 | 137 | A | 0.053019 |
N | 7 | Q7K | Caa | Aaa | 125 | 125 | B.1.1.7 | 0.000112 |
N | 7 | Q7K | Caa | Aaa | 111 | 111 | AY.103 | 0.000689 |
N | 7 | Q7K | Caa | Aaa | 108 | 108 | AY.3 | 0.001074 |
N | 7 | Q7K | Caa | Aaa | 108 | 108 | B.1.617.2 | 0.000407 |
N | 7 | Q7K | Caa | Aaa | 97 | 97 | B.1.596 | 0.008452 |
N | 7 | Q7K | Caa | Aaa | 83 | 83 | AY.26 | 0.00235 |
N | 7 | Q7K | Caa | Aaa | 70 | 70 | B.1.2 | 0.000616 |
N | 7 | Q7K | Caa | Aaa | 52 | 52 | B.1 | 0.000476 |
N | 7 | Q7K | Caa | Aaa | 48 | 48 | B.1.177 | 0.000632 |
N | 7 | Q7K | Caa | Aaa | 39 | 39 | B.1.177.16 | 0.025914 |
N | 7 | Q7K | Caa | Aaa | 37 | 37 | C.19 | 1 |
N | 7 | Q7K | Caa | Aaa | 36 | 36 | B.1.637 | 0.002631 |
N | 7 | Q7K | Caa | Aaa | 35 | 35 | B.1.351 | 0.00104 |
N | 7 | Q7K | Caa | Aaa | 34 | 34 | B.1.1 | 0.000617 |
N | 7 | Q7K | Caa | Aaa | 28 | 28 | B.1.526 | 0.000658 |
N | 7 | Q7K | Caa | Aaa | 27 | 27 | AY.25 | 0.000162 |
N | 7 | Q7K | Caa | Aaa | 26 | 26 | B.1.1.222 | 0.005304 |
N | 7 | Q7K | Caa | Aaa | 26 | 26 | B.1.1.311 | 0.009312 |
N | 7 | Q7K | Caa | Aaa | 23 | 23 | AY.44 | 0.00014 |
N | 7 | Q7K | Caa | Aaa | 23 | 23 | B.1.221 | 0.001634 |
N | 7 | Q7K | Caa | Aaa | 22 | 22 | AY.33 | 0.001469 |
N | 7 | Q7K | Caa | Aaa | 21 | 21 | AY.5 | 0.000434 |
N | 7 | Q7K | Caa | Aaa | 18 | 18 | B.1.429 | 0.000424 |
N | 7 | Q7K | Caa | Aaa | 15 | 15 | B.1.36 | 0.002189 |
N | 7 | Q7K | Caa | Aaa | 14 | 14 | AY.4.2 | 0.000304 |
N | 7 | Q7K | Caa | Aaa | 14 | 14 | B.1.177.81 | 0.002651 |
N | 7 | Q7K | Caa | Aaa | 14 | 14 | B.1.282 | 0.208955 |
N | 7 | Q7K | Caa | Aaa | 13 | 13 | AY.39 | 0.000321 |
N | 7 | Q7K | Caa | Aaa | 11 | 11 | AD.2 | 0.002409 |
N | 7 | Q7K | Caa | Aaa | 11 | 11 | AY.43 | 0.000049 |
N | 7 | Q7K | Caa | Aaa | 11 | 11 | B.1.1.519 | 0.000437 |
N | 7 | Q7K | Caa | Aaa | 11 | 11 | B.1.243 | 0.000765 |
N | 7 | Q7K | Caa | Aaa | 10 | 10 | B.1.621 | 0.000885 |
N | 7 | Q7K | Caa | Aaa | 10 | 10 | P.1.14 | 0.000478 |
N | 7 | Q7K | Caa | Aaa | 9 | 9 | AY.20 | 0.00035 |
N | 7 | Q7K | Caa | Aaa | 9 | 9 | B.1.1.1 | 0.00294 |
N | 7 | Q7K | Caa | Aaa | 9 | 9 | B.1.1.28 | 0.002801 |
N | 7 | Q7K | Caa | Aaa | 9 | 9 | B.1.9.4 | 0.055215 |
N | 7 | Q7K | Caa | Aaa | 8 | 8 | AY.23 | 0.000558 |
N | 7 | Q7K | Caa | Aaa | 8 | 8 | AY.47 | 0.000249 |
N | 7 | Q7K | Caa | Aaa | 7 | 7 | AY.35 | 0.001631 |
N | 7 | Q7K | Caa | Aaa | 7 | 7 | B.1.234 | 0.000924 |
N | 7 | Q7K | Caa | Aaa | 6 | 6 | A.2 | 0.003971 |
N | 7 | Q7K | Caa | Aaa | 6 | 6 | AY.100 | 0.000276 |
N | 7 | Q7K | Caa | Aaa | 6 | 6 | AY.116 | 0.001721 |
N | 7 | Q7K | Caa | Aaa | 6 | 6 | AY.5.3 | 0.002024 |
N | 7 | Q7K | Caa | Aaa | 6 | 6 | AY.53 | 0.001725 |
N | 7 | Q7K | Caa | Aaa | 6 | 6 | B.1.1.216 | 0.005343 |
N | 7 | Q7K | Caa | Aaa | 6 | 6 | B.1.36.8 | 0.006 |
N | 7 | Q7K | Caa | Aaa | 5 | 5 | A.1 | 0.001409 |
N | 7 | Q7K | Caa | Aaa | 5 | 5 | A.23.1 | 0.003521 |
N | 7 | Q7K | Caa | Aaa | 5 | 5 | AY.40 | 0.004822 |
N | 7 | Q7K | Caa | Aaa | 5 | 5 | B.1.1.317 | 0.002058 |
N | 7 | Q7K | Caa | Aaa | 5 | 5 | B.1.1.39 | 0.002548 |
N | 7 | Q7K | Caa | Aaa | 5 | 5 | B.1.311 | 0.001373 |
N | 7 | Q7K | Caa | Aaa | 5 | 5 | B.1.427 | 0.000252 |
N | 7 | Q7K | Caa | Aaa | 4 | 4 | AY.102 | 0.000106 |
N | 7 | Q7K | Caa | Aaa | 4 | 4 | AY.118 | 0.000251 |
N | 7 | Q7K | Caa | Aaa | 4 | 4 | AY.120 | 0.000149 |
N | 7 | Q7K | Caa | Aaa | 4 | 4 | AY.29 | 0.000063 |
N | 7 | Q7K | Caa | Aaa | 4 | 4 | AY.34 | 0.000388 |
N | 7 | Q7K | Caa | Aaa | 4 | 4 | AY.45 | 0.000487 |
N | 7 | Q7K | Caa | Aaa | 4 | 4 | AY.75 | 0.000224 |
N | 7 | Q7K | Caa | Aaa | 4 | 4 | AY.9.2 | 0.000147 |
N | 7 | Q7K | Caa | Aaa | 4 | 4 | AY.98.1 | 0.000194 |
N | 7 | Q7K | Caa | Aaa | 4 | 4 | B.1.1.207 | 0.004728 |
N | 7 | Q7K | Caa | Aaa | 4 | 4 | B.1.1.370 | 0.050633 |
N | 7 | Q7K | Caa | Aaa | 4 | 4 | B.1.177.51 | 0.018265 |
N | 7 | Q7K | Caa | Aaa | 4 | 4 | B.1.597 | 0.018519 |
N | 7 | Q7K | Caa | Aaa | 4 | 4 | B.1.628 | 0.001409 |
N | 7 | Q7K | Caa | Aaa | 4 | 4 | P.1 | 0.000063 |
N | 7 | Q7K | Caa | Aaa | 3 | 3 | AY.1 | 0.001187 |
N | 7 | Q7K | Caa | Aaa | 3 | 3 | AY.111 | 0.000549 |
N | 7 | Q7K | Caa | Aaa | 3 | 3 | AY.119 | 0.000106 |
N | 7 | Q7K | Caa | Aaa | 3 | 3 | AY.16.1 | 0.00141 |
N | 7 | Q7K | Caa | Aaa | 3 | 3 | AY.2 | 0.001068 |
N | 7 | Q7K | Caa | Aaa | 3 | 3 | AY.29.1 | 0.000662 |
N | 7 | Q7K | Caa | Aaa | 3 | 3 | AY.36 | 0.000445 |
N | 7 | Q7K | Caa | Aaa | 3 | 3 | AY.39.1 | 0.000119 |
N | 7 | Q7K | Caa | Aaa | 3 | 3 | AY.46 | 0.000312 |
N | 7 | Q7K | Caa | Aaa | 3 | 3 | AY.46.4 | 0.000494 |
N | 7 | Q7K | Caa | Aaa | 3 | 3 | AY.54 | 0.000286 |
N | 7 | Q7K | Caa | Aaa | 3 | 3 | AY.74 | 0.000347 |
N | 7 | Q7K | Caa | Aaa | 3 | 3 | B.1.1.284 | 0.000322 |
N | 7 | Q7K | Caa | Aaa | 3 | 3 | B.1.177.72 | 0.010169 |
N | 7 | Q7K | Caa | Aaa | 3 | 3 | B.1.351.3 | 0.002629 |
N | 7 | Q7K | Caa | Aaa | 3 | 3 | B.1.438.1 | 0.000322 |
N | 7 | Q7K | Caa | Aaa | 3 | 3 | B.1.466.2 | 0.001174 |
N | 7 | Q7K | Caa | Aaa | 3 | 3 | B.1.490 | 0.3 |
N | 7 | Q7K | Caa | Aaa | 3 | 3 | C.36.3 | 0.001702 |
N | 7 | Q7K | Caa | Aaa | 3 | 3 | C.37 | 0.000348 |
N | 7 | Q7K | Caa | Aaa | 3 | 3 | D.2 | 0.000225 |
N | 7 | Q7K | Caa | Aaa | 3 | 3 | R.1 | 0.00027 |
N | 7 | Q7K | Caa | Aaa | 2 | 2 | AY.106 | 0.00067 |
N | 7 | Q7K | Caa | Aaa | 2 | 2 | AY.117 | 0.000169 |
N | 7 | Q7K | Caa | Aaa | 2 | 2 | AY.12 | 0.000632 |
N | 7 | Q7K | Caa | Aaa | 2 | 2 | AY.13 | 0.000322 |
N | 7 | Q7K | Caa | Aaa | 2 | 2 | AY.19 | 0.002281 |
N | 7 | Q7K | Caa | Aaa | 2 | 2 | AY.30 | 0.000791 |
N | 7 | Q7K | Caa | Aaa | 2 | 2 | AY.38 | 0.000999 |
N | 7 | Q7K | Caa | Aaa | 2 | 2 | AY.42 | 0.00008 |
N | 7 | Q7K | Caa | Aaa | 2 | 2 | AY.61 | 0.00021 |
N | 7 | Q7K | Caa | Aaa | 2 | 2 | AY.63 | 0.000774 |
N | 7 | Q7K | Caa | Aaa | 2 | 2 | AY.94 | 0.000885 |
N | 7 | Q7K | Caa | Aaa | 2 | 2 | AY.99.2 | 0.000184 |
N | 7 | Q7K | Caa | Aaa | 2 | 2 | AZ.1 | 0.001735 |
N | 7 | Q7K | Caa | Aaa | 2 | 2 | AZ.2 | 0.001642 |
N | 7 | Q7K | Caa | Aaa | 2 | 2 | B | 0.000256 |
N | 7 | Q7K | Caa | Aaa | 2 | 2 | B.1.1.214 | 0.000111 |
N | 7 | Q7K | Caa | Aaa | 2 | 2 | B.1.1.25 | 0.001137 |
N | 7 | Q7K | Caa | Aaa | 2 | 2 | B.1.1.33 | 0.000842 |
N | 7 | Q7K | Caa | Aaa | 2 | 2 | B.1.1.37 | 0.000386 |
N | 7 | Q7K | Caa | Aaa | 2 | 2 | B.1.1.70 | 0.000682 |
N | 7 | Q7K | Caa | Aaa | 2 | 2 | B.1.177.21 | 0.000153 |
N | 7 | Q7K | Caa | Aaa | 2 | 2 | B.1.177.65 | 0.001331 |
N | 7 | Q7K | Caa | Aaa | 2 | 2 | B.1.177.80 | 0.003824 |
N | 7 | Q7K | Caa | Aaa | 2 | 2 | B.1.221.1 | 0.005814 |
N | 7 | Q7K | Caa | Aaa | 2 | 2 | B.1.258 | 0.000133 |
N | 7 | Q7K | Caa | Aaa | 2 | 2 | B.1.258.17 | 0.000208 |
N | 7 | Q7K | Caa | Aaa | 2 | 2 | B.1.400 | 0.000858 |
N | 7 | Q7K | Caa | Aaa | 2 | 2 | B.1.405 | 0.024691 |
N | 7 | Q7K | Caa | Aaa | 2 | 2 | B.1.453 | 0.006472 |
N | 7 | Q7K | Caa | Aaa | 2 | 2 | B.1.561 | 0.000794 |
N | 7 | Q7K | Caa | Aaa | 2 | 2 | B.1.617.1 | 0.000258 |
N | 7 | Q7K | Caa | Aaa | 2 | 2 | C.16 | 0.002121 |
N | 7 | Q7K | Caa | Aaa | 2 | 2 | N.6 | 0.014184 |
N | 7 | Q7K | Caa | Aaa | 2 | 2 | P.2 | 0.000373 |
N | 7 | Q7K | Caa | Aaa | 1 | 1 | A.2.5 | 0.000499 |
N | 7 | Q7K | Caa | Aaa | 1 | 1 | AU.1 | 0.001266 |
N | 7 | Q7K | Caa | Aaa | 1 | 1 | AY.107 | 0.000466 |
N | 7 | Q7K | Caa | Aaa | 1 | 1 | AY.109 | 0.00074 |
N | 7 | Q7K | Caa | Aaa | 1 | 1 | AY.110 | 0.000113 |
N | 7 | Q7K | Caa | Aaa | 1 | 1 | AY.116.1 | 0.000311 |
N | 7 | Q7K | Caa | Aaa | 1 | 1 | AY.120.2 | 0.001285 |
N | 7 | Q7K | Caa | Aaa | 1 | 1 | AY.121 | 0.000135 |
N | 7 | Q7K | Caa | Aaa | 1 | 1 | AY.16 | 0.00038 |
N | 7 | Q7K | Caa | Aaa | 1 | 1 | AY.27 | 0.000065 |
N | 7 | Q7K | Caa | Aaa | 1 | 1 | AY.3.1 | 0.000085 |
N | 7 | Q7K | Caa | Aaa | 1 | 1 | AY.37 | 0.000316 |
N | 7 | Q7K | Caa | Aaa | 1 | 1 | AY.4.2.1 | 0.000149 |
N | 7 | Q7K | Caa | Aaa | 1 | 1 | AY.41 | 0.000294 |
N | 7 | Q7K | Caa | Aaa | 1 | 1 | AY.46.5 | 0.000198 |
N | 7 | Q7K | Caa | Aaa | 1 | 1 | AY.58 | 0.000907 |
N | 7 | Q7K | Caa | Aaa | 1 | 1 | AY.59 | 0.00053 |
N | 7 | Q7K | Caa | Aaa | 1 | 1 | AY.68 | 0.000274 |
N | 7 | Q7K | Caa | Aaa | 1 | 1 | AY.7 | 0.000196 |
N | 7 | Q7K | Caa | Aaa | 1 | 1 | AY.70 | 0.000209 |
N | 7 | Q7K | Caa | Aaa | 1 | 1 | AY.75.1 | 0.00018 |
N | 7 | Q7K | Caa | Aaa | 1 | 1 | AY.76 | 0.004831 |
N | 7 | Q7K | Caa | Aaa | 1 | 1 | AY.80 | 0.001129 |
N | 7 | Q7K | Caa | Aaa | 1 | 1 | AY.85 | 0.000427 |
N | 7 | Q7K | Caa | Aaa | 1 | 1 | AY.87 | 0.000833 |
N | 7 | Q7K | Caa | Aaa | 1 | 1 | AY.88 | 0.000884 |
N | 7 | Q7K | Caa | Aaa | 1 | 1 | AY.9 | 0.000068 |
N | 7 | Q7K | Caa | Aaa | 1 | 1 | AY.9.1 | 0.000084 |
N | 7 | Q7K | Caa | Aaa | 1 | 1 | AY.91 | 0.00073 |
N | 7 | Q7K | Caa | Aaa | 1 | 1 | AY.92 | 0.000287 |
N | 7 | Q7K | Caa | Aaa | 1 | 1 | B.1.1.10 | 0.001115 |
N | 7 | Q7K | Caa | Aaa | 1 | 1 | B.1.1.121 | 0.002427 |
N | 7 | Q7K | Caa | Aaa | 1 | 1 | B.1.1.13 | 0.035714 |
N | 7 | Q7K | Caa | Aaa | 1 | 1 | B.1.1.153 | 0.001095 |
N | 7 | Q7K | Caa | Aaa | 1 | 1 | B.1.1.277 | 0.000759 |
N | 7 | Q7K | Caa | Aaa | 1 | 1 | B.1.1.297 | 0.002237 |
N | 7 | Q7K | Caa | Aaa | 1 | 1 | B.1.1.304 | 0.002809 |
N | 7 | Q7K | Caa | Aaa | 1 | 1 | B.1.1.306 | 0.000438 |
N | 7 | Q7K | Caa | Aaa | 1 | 1 | B.1.1.310 | 0.015152 |
N | 7 | Q7K | Caa | Aaa | 1 | 1 | B.1.1.312 | 0.001912 |
N | 7 | Q7K | Caa | Aaa | 1 | 1 | B.1.1.318 | 0.000302 |
N | 7 | Q7K | Caa | Aaa | 1 | 1 | B.1.1.348 | 0.000796 |
N | 7 | Q7K | Caa | Aaa | 1 | 1 | B.1.1.351 | 0.002793 |
N | 7 | Q7K | Caa | Aaa | 1 | 1 | B.1.1.389 | 0.006061 |
N | 7 | Q7K | Caa | Aaa | 1 | 1 | B.1.1.434 | 0.000349 |
N | 7 | Q7K | Caa | Aaa | 1 | 1 | B.1.1.525 | 0.005464 |
N | 7 | Q7K | Caa | Aaa | 1 | 1 | B.1.1.63 | 0.000386 |
N | 7 | Q7K | Caa | Aaa | 1 | 1 | B.1.110 | 0.004525 |
N | 7 | Q7K | Caa | Aaa | 1 | 1 | B.1.111 | 0.001175 |
N | 7 | Q7K | Caa | Aaa | 1 | 1 | B.1.157 | 0.002985 |
N | 7 | Q7K | Caa | Aaa | 1 | 1 | B.1.160.30 | 0.002976 |
N | 7 | Q7K | Caa | Aaa | 1 | 1 | B.1.177.12 | 0.000152 |
N | 7 | Q7K | Caa | Aaa | 1 | 1 | B.1.177.4 | 0.000211 |
N | 7 | Q7K | Caa | Aaa | 1 | 1 | B.1.177.44 | 0.000519 |
N | 7 | Q7K | Caa | Aaa | 1 | 1 | B.1.177.86 | 0.000183 |
N | 7 | Q7K | Caa | Aaa | 1 | 1 | B.1.195 | 0.005025 |
N | 7 | Q7K | Caa | Aaa | 1 | 1 | B.1.206 | 0.000816 |
N | 7 | Q7K | Caa | Aaa | 1 | 1 | B.1.241 | 0.000812 |
N | 7 | Q7K | Caa | Aaa | 1 | 1 | B.1.258.14 | 0.00098 |
N | 7 | Q7K | Caa | Aaa | 1 | 1 | B.1.279 | 0.000514 |
N | 7 | Q7K | Caa | Aaa | 1 | 1 | B.1.320 | 0.001245 |
N | 7 | Q7K | Caa | Aaa | 1 | 1 | B.1.346 | 0.001311 |
N | 7 | Q7K | Caa | Aaa | 1 | 1 | B.1.36.1 | 0.00114 |
N | 7 | Q7K | Caa | Aaa | 1 | 1 | B.1.36.22 | 0.001208 |
N | 7 | Q7K | Caa | Aaa | 1 | 1 | B.1.36.23 | 0.016393 |
N | 7 | Q7K | Caa | Aaa | 1 | 1 | B.1.36.25 | 0.002208 |
N | 7 | Q7K | Caa | Aaa | 1 | 1 | B.1.36.29 | 0.000517 |
N | 7 | Q7K | Caa | Aaa | 1 | 1 | B.1.36.33 | 0.007576 |
N | 7 | Q7K | Caa | Aaa | 1 | 1 | B.1.384 | 0.1 |
N | 7 | Q7K | Caa | Aaa | 1 | 1 | B.1.422 | 0.000812 |
N | 7 | Q7K | Caa | Aaa | 1 | 1 | B.1.469 | 0.00361 |
N | 7 | Q7K | Caa | Aaa | 1 | 1 | B.1.471 | 0.002732 |
N | 7 | Q7K | Caa | Aaa | 1 | 1 | B.1.474 | 0.001901 |
N | 7 | Q7K | Caa | Aaa | 1 | 1 | B.1.480 | 0.002488 |
N | 7 | Q7K | Caa | Aaa | 1 | 1 | B.1.509 | 0.000866 |
N | 7 | Q7K | Caa | Aaa | 1 | 1 | B.1.560 | 0.00463 |
N | 7 | Q7K | Caa | Aaa | 1 | 1 | B.1.575 | 0.000303 |
N | 7 | Q7K | Caa | Aaa | 1 | 1 | B.1.595 | 0.000261 |
N | 7 | Q7K | Caa | Aaa | 1 | 1 | B.40 | 0.000364 |
N | 7 | Q7K | Caa | Aaa | 1 | 1 | C.36.1 | 0.004149 |
N | 7 | Q7K | Caa | Aaa | 1 | 1 | L.3 | 0.003546 |
N | 7 | Q7K | Caa | Aaa | 1 | 1 | P.1.15 | 0.000232 |
N | 7 | Q7K | Caa | Aaa | 1 | 1 | P.1.7 | 0.000319 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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