CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = N : Mut = P80R

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
N	80	P80R		nonsyn	cCa	cGa	114785	114772	0.999887	28511-28513
N	80	P80R		nonsyn	cCA	cGC	114785	10	0.0000871194	28511-28513
N	80	P80R		nonsyn	cCA	cGG	114785	3	0.0000261358	28511-28513

Details of the mutation P80R within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
N	80	P80R	cCa	cGa	114772	114785	All	0.021952
N	80	P80R	cCA	cGC	10	114785	All	0.000002
N	80	P80R	cCA	cGG	3	114785	All	0.000001
N	80	P80R	cCa	cGa	62802	62815	P.1	0.989382
N	80	P80R	cCA	cGC	10	62815	P.1	0.000158
N	80	P80R	cCA	cGG	3	62815	P.1	0.000047
N	80	P80R	cCa	cGa	20880	20880	P.1.14	0.998088
N	80	P80R	cCa	cGa	6154	6154	P.1.17	0.995471
N	80	P80R	cCa	cGa	4270	4270	P.1.15	0.9921
N	80	P80R	cCa	cGa	3683	3683	P.1.10	0.992455
N	80	P80R	cCa	cGa	3102	3102	P.1.7	0.990421
N	80	P80R	cCa	cGa	3048	3048	P.1.1	0.968234
N	80	P80R	cCa	cGa	2611	2611	P.1.16	0.976805
N	80	P80R	cCa	cGa	1918	1918	P.1.12	0.928364
N	80	P80R	cCa	cGa	1138	1138	P.1.17.1	0.995626
N	80	P80R	cCa	cGa	1105	1105	P.1.13	0.992812
N	80	P80R	cCa	cGa	1023	1023	P.1.4	0.999023
N	80	P80R	cCa	cGa	863	863	P.1.2	0.997688
N	80	P80R	cCa	cGa	510	510	P.1.6	0.992218
N	80	P80R	cCa	cGa	209	209	P.1.8	1
N	80	P80R	cCa	cGa	207	207	P.1.9	0.995192
N	80	P80R	cCa	cGa	189	189	B.1.630	0.989529
N	80	P80R	cCa	cGa	185	185	B.1	0.001695
N	80	P80R	cCa	cGa	163	163	B.1.1	0.002957
N	80	P80R	cCa	cGa	112	112	P.1.10.1	0.910569
N	80	P80R	cCa	cGa	98	98	P.1.11	1
N	80	P80R	cCa	cGa	47	47	B.1.177.35	0.032481
N	80	P80R	cCa	cGa	37	37	B.1.1.528	0.177885
N	80	P80R	cCa	cGa	29	29	P.1.3	1
N	80	P80R	cCa	cGa	27	27	C.37	0.003134
N	80	P80R	cCa	cGa	25	25	C.1.2	0.106383
N	80	P80R	cCa	cGa	24	24	B.1.1.28	0.00747
N	80	P80R	cCa	cGa	24	24	P.1.10.2	1
N	80	P80R	cCa	cGa	17	17	B.1.160	0.00053
N	80	P80R	cCa	cGa	15	15	B.1.177	0.000198
N	80	P80R	cCa	cGa	13	13	B.1.1.7	0.000012
N	80	P80R	cCa	cGa	13	13	P.1.5	1
N	80	P80R	cCa	cGa	12	12	B.1.1.519	0.000477
N	80	P80R	cCa	cGa	11	11	AY.103	0.000068
N	80	P80R	cCa	cGa	11	11	B.1.429	0.000259
N	80	P80R	cCa	cGa	9	9	B.1.214.2	0.005396
N	80	P80R	cCa	cGa	9	9	B.1.349	0.006433
N	80	P80R	cCa	cGa	8	8	A.2.5	0.003992
N	80	P80R	cCa	cGa	6	6	AY.3	0.00006
N	80	P80R	cCa	cGa	6	6	AY.43	0.000027
N	80	P80R	cCa	cGa	6	6	B.1.351	0.000178
N	80	P80R	cCa	cGa	6	6	B.1.398	0.017857
N	80	P80R	cCa	cGa	6	6	B.1.617.2	0.000023
N	80	P80R	cCa	cGa	5	5	AY.44	0.00003
N	80	P80R	cCa	cGa	5	5	B.1.596	0.000436
N	80	P80R	cCa	cGa	4	4	B	0.000511
N	80	P80R	cCa	cGa	4	4	B.1.1.523	0.00625
N	80	P80R	cCa	cGa	4	4	B.1.526	0.000094
N	80	P80R	cCa	cGa	4	4	B.1.621	0.000354
N	80	P80R	cCa	cGa	4	4	C.37.1	0.010471
N	80	P80R	cCa	cGa	3	3	B.1.1.161	0.010601
N	80	P80R	cCa	cGa	3	3	B.1.1.220	0.005576
N	80	P80R	cCa	cGa	3	3	B.1.1.372	0.002066
N	80	P80R	cCa	cGa	3	3	B.1.1.507	0.026087
N	80	P80R	cCa	cGa	3	3	B.1.221	0.000213
N	80	P80R	cCa	cGa	3	3	B.1.234	0.000396
N	80	P80R	cCa	cGa	3	3	C.36.3.1	0.008152
N	80	P80R	cCa	cGa	3	3	P.2	0.00056
N	80	P80R	cCa	cGa	2	2	AY.101	0.000981
N	80	P80R	cCa	cGa	2	2	AY.102	0.000053
N	80	P80R	cCa	cGa	2	2	AY.20	0.000078
N	80	P80R	cCa	cGa	2	2	AY.23	0.000139
N	80	P80R	cCa	cGa	2	2	AY.63	0.000774
N	80	P80R	cCa	cGa	2	2	AY.9.2	0.000073
N	80	P80R	cCa	cGa	2	2	AZ.1	0.001735
N	80	P80R	cCa	cGa	2	2	B.1.1.117	0.019417
N	80	P80R	cCa	cGa	2	2	B.1.1.348	0.001592
N	80	P80R	cCa	cGa	2	2	B.1.1.409	0.005666
N	80	P80R	cCa	cGa	2	2	B.1.177.7	0.00033
N	80	P80R	cCa	cGa	2	2	B.1.177.73	0.001133
N	80	P80R	cCa	cGa	2	2	B.1.2	0.000018
N	80	P80R	cCa	cGa	2	2	B.1.241	0.001623
N	80	P80R	cCa	cGa	2	2	B.1.311	0.000549
N	80	P80R	cCa	cGa	2	2	B.1.324	0.00321
N	80	P80R	cCa	cGa	2	2	B.1.369	0.00057
N	80	P80R	cCa	cGa	2	2	B.1.524	0.002813
N	80	P80R	cCa	cGa	2	2	B.1.533	0.019231
N	80	P80R	cCa	cGa	2	2	B.1.623	0.001073
N	80	P80R	cCa	cGa	1	1	AY.108	0.001103
N	80	P80R	cCa	cGa	1	1	AY.120.2	0.001285
N	80	P80R	cCa	cGa	1	1	AY.13	0.000161
N	80	P80R	cCa	cGa	1	1	AY.16.1	0.00047
N	80	P80R	cCa	cGa	1	1	AY.2	0.000356
N	80	P80R	cCa	cGa	1	1	AY.25	0.000006
N	80	P80R	cCa	cGa	1	1	AY.35	0.000233
N	80	P80R	cCa	cGa	1	1	AY.39	0.000025
N	80	P80R	cCa	cGa	1	1	AY.39.1	0.00004
N	80	P80R	cCa	cGa	1	1	AY.4	0.000002
N	80	P80R	cCa	cGa	1	1	AY.4.5	0.000107
N	80	P80R	cCa	cGa	1	1	AY.47	0.000031
N	80	P80R	cCa	cGa	1	1	AY.5	0.000021
N	80	P80R	cCa	cGa	1	1	AY.61	0.000105
N	80	P80R	cCa	cGa	1	1	AY.62	0.000436
N	80	P80R	cCa	cGa	1	1	AY.75.1	0.00018
N	80	P80R	cCa	cGa	1	1	AY.99.2	0.000092
N	80	P80R	cCa	cGa	1	1	B.1.1.121	0.002427
N	80	P80R	cCa	cGa	1	1	B.1.1.198	0.001468
N	80	P80R	cCa	cGa	1	1	B.1.1.236	0.006897
N	80	P80R	cCa	cGa	1	1	B.1.1.265	0.003155
N	80	P80R	cCa	cGa	1	1	B.1.1.294	0.001266
N	80	P80R	cCa	cGa	1	1	B.1.1.306	0.000438
N	80	P80R	cCa	cGa	1	1	B.1.1.33	0.000421
N	80	P80R	cCa	cGa	1	1	B.1.1.54	0.003021
N	80	P80R	cCa	cGa	1	1	B.1.1.99	0.02381
N	80	P80R	cCa	cGa	1	1	B.1.111	0.001175
N	80	P80R	cCa	cGa	1	1	B.1.170	0.00431
N	80	P80R	cCa	cGa	1	1	B.1.177.42	0.000894
N	80	P80R	cCa	cGa	1	1	B.1.179	0.003759
N	80	P80R	cCa	cGa	1	1	B.1.214	0.003663
N	80	P80R	cCa	cGa	1	1	B.1.236	0.002053
N	80	P80R	cCa	cGa	1	1	B.1.36	0.000146
N	80	P80R	cCa	cGa	1	1	B.1.367	0.000792
N	80	P80R	cCa	cGa	1	1	B.1.415	0.014286
N	80	P80R	cCa	cGa	1	1	B.1.497	0.000315
N	80	P80R	cCa	cGa	1	1	B.1.575	0.000303
N	80	P80R	cCa	cGa	1	1	B.1.609	0.000479
N	80	P80R	cCa	cGa	1	1	B.1.620	0.000946
N	80	P80R	cCa	cGa	1	1	B.1.636	0.006711
N	80	P80R	cCa	cGa	1	1	B.1.637	0.000073
N	80	P80R	cCa	cGa	1	1	C.13	0.025641
N	80	P80R	cCa	cGa	1	1	D.2	0.000075
N	80	P80R	cCa	cGa	1	1	P.4	0.003802
N	80	P80R	cCa	cGa	1	1	P.7	0.004367
N	80	P80R	cCa	cGa	1	1	Q.1	0.000126
N	80	P80R	cCa	cGa	1	1	Q.8	0.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.