CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = N : Mut = P6L

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
N	6	P6L		nonsyn	cCc	cTc	5735	5735	1	28289-28291

Details of the mutation P6L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
N	6	P6L	cCc	cTc	5735	5735	All	0.001097
N	6	P6L	cCc	cTc	1812	1812	B.1.438.1	0.194358
N	6	P6L	cCc	cTc	753	753	AY.103	0.004675
N	6	P6L	cCc	cTc	382	382	B.1.617.2	0.001438
N	6	P6L	cCc	cTc	375	375	B.1.1.7	0.000336
N	6	P6L	cCc	cTc	235	235	AY.4	0.000366
N	6	P6L	cCc	cTc	210	210	B.1.1.159	0.981308
N	6	P6L	cCc	cTc	177	177	AY.44	0.001077
N	6	P6L	cCc	cTc	155	155	AY.36	0.022973
N	6	P6L	cCc	cTc	146	146	B.1.2	0.001286
N	6	P6L	cCc	cTc	131	131	B.1	0.0012
N	6	P6L	cCc	cTc	80	80	AY.102	0.002121
N	6	P6L	cCc	cTc	64	64	AY.121	0.00866
N	6	P6L	cCc	cTc	60	60	B.1.1	0.001088
N	6	P6L	cCc	cTc	57	57	P.1	0.000898
N	6	P6L	cCc	cTc	56	56	AY.26	0.001585
N	6	P6L	cCc	cTc	52	52	AY.25	0.000313
N	6	P6L	cCc	cTc	47	47	B.1.243	0.00327
N	6	P6L	cCc	cTc	41	41	AY.43	0.000182
N	6	P6L	cCc	cTc	32	32	AY.3	0.000318
N	6	P6L	cCc	cTc	32	32	B.1.351	0.000951
N	6	P6L	cCc	cTc	31	31	AY.23	0.002162
N	6	P6L	cCc	cTc	29	29	R.1	0.00261
N	6	P6L	cCc	cTc	28	28	AY.33	0.00187
N	6	P6L	cCc	cTc	26	26	AY.105	0.01672
N	6	P6L	cCc	cTc	23	23	B.1.177	0.000303
N	6	P6L	cCc	cTc	20	20	AY.5	0.000413
N	6	P6L	cCc	cTc	18	18	AY.29	0.000284
N	6	P6L	cCc	cTc	18	18	B.1.1.519	0.000715
N	6	P6L	cCc	cTc	17	17	B.1.1.222	0.003468
N	6	P6L	cCc	cTc	16	16	B.1.1.424	0.727273
N	6	P6L	cCc	cTc	16	16	B.1.369	0.004564
N	6	P6L	cCc	cTc	16	16	B.1.517	0.006832
N	6	P6L	cCc	cTc	15	15	B.1.111	0.017626
N	6	P6L	cCc	cTc	14	14	AY.20	0.000544
N	6	P6L	cCc	cTc	14	14	B.1.1.397	0.031532
N	6	P6L	cCc	cTc	13	13	AY.46	0.001353
N	6	P6L	cCc	cTc	13	13	B.1.234	0.001715
N	6	P6L	cCc	cTc	13	13	B.1.36.17	0.006423
N	6	P6L	cCc	cTc	13	13	B.1.577	0.008935
N	6	P6L	cCc	cTc	12	12	AY.9.1	0.001005
N	6	P6L	cCc	cTc	12	12	B.1.1.406	0.077922
N	6	P6L	cCc	cTc	11	11	AY.117	0.00093
N	6	P6L	cCc	cTc	11	11	P.1.16	0.004115
N	6	P6L	cCc	cTc	10	10	B.1.596	0.000871
N	6	P6L	cCc	cTc	9	9	AY.39.2	0.013867
N	6	P6L	cCc	cTc	9	9	AY.47	0.00028
N	6	P6L	cCc	cTc	9	9	B.1.258	0.000599
N	6	P6L	cCc	cTc	8	8	AY.39	0.000198
N	6	P6L	cCc	cTc	8	8	AY.55	0.007339
N	6	P6L	cCc	cTc	8	8	AY.64	0.004762
N	6	P6L	cCc	cTc	8	8	AY.74	0.000925
N	6	P6L	cCc	cTc	8	8	B.1.177.32	0.010796
N	6	P6L	cCc	cTc	7	7	AY.4.2	0.000152
N	6	P6L	cCc	cTc	7	7	B.1.617.1	0.000903
N	6	P6L	cCc	cTc	7	7	P.1.14	0.000335
N	6	P6L	cCc	cTc	6	6	AY.100	0.000276
N	6	P6L	cCc	cTc	6	6	AY.4.5	0.000645
N	6	P6L	cCc	cTc	6	6	AY.46.6	0.000433
N	6	P6L	cCc	cTc	6	6	AY.95	0.004566
N	6	P6L	cCc	cTc	6	6	AY.98	0.000474
N	6	P6L	cCc	cTc	6	6	AY.98.1	0.000291
N	6	P6L	cCc	cTc	6	6	B.1.1.28	0.001867
N	6	P6L	cCc	cTc	6	6	B.1.221	0.000426
N	6	P6L	cCc	cTc	6	6	B.1.240	0.001293
N	6	P6L	cCc	cTc	6	6	B.1.241	0.00487
N	6	P6L	cCc	cTc	6	6	B.1.526	0.000141
N	6	P6L	cCc	cTc	6	6	B.6.6	0.005333
N	6	P6L	cCc	cTc	5	5	AY.118	0.000313
N	6	P6L	cCc	cTc	5	5	AY.15	0.011111
N	6	P6L	cCc	cTc	5	5	AY.61	0.000524
N	6	P6L	cCc	cTc	5	5	B.1.1.317	0.002058
N	6	P6L	cCc	cTc	5	5	B.1.160	0.000156
N	6	P6L	cCc	cTc	5	5	B.1.36	0.00073
N	6	P6L	cCc	cTc	5	5	B.1.429	0.000118
N	6	P6L	cCc	cTc	4	4	A.2.5	0.001996
N	6	P6L	cCc	cTc	4	4	AY.116.1	0.001246
N	6	P6L	cCc	cTc	4	4	AY.120	0.000149
N	6	P6L	cCc	cTc	4	4	AY.42	0.000161
N	6	P6L	cCc	cTc	4	4	AY.9.2	0.000147
N	6	P6L	cCc	cTc	4	4	AY.99.2	0.000369
N	6	P6L	cCc	cTc	4	4	B.1.1.33	0.001684
N	6	P6L	cCc	cTc	4	4	B.1.1.37	0.000771
N	6	P6L	cCc	cTc	4	4	B.1.1.50	0.002716
N	6	P6L	cCc	cTc	4	4	B.1.621	0.000354
N	6	P6L	cCc	cTc	4	4	B.1.623	0.002146
N	6	P6L	cCc	cTc	4	4	P.1.10	0.001078
N	6	P6L	cCc	cTc	4	4	P.1.17	0.000647
N	6	P6L	cCc	cTc	3	3	A	0.001161
N	6	P6L	cCc	cTc	3	3	AY.14	0.000264
N	6	P6L	cCc	cTc	3	3	AY.27	0.000194
N	6	P6L	cCc	cTc	3	3	AY.3.1	0.000256
N	6	P6L	cCc	cTc	3	3	AY.35	0.000699
N	6	P6L	cCc	cTc	3	3	AY.6	0.000123
N	6	P6L	cCc	cTc	3	3	AY.67	0.001393
N	6	P6L	cCc	cTc	3	3	AY.75	0.000168
N	6	P6L	cCc	cTc	3	3	AY.84	0.001312
N	6	P6L	cCc	cTc	3	3	AY.9	0.000203
N	6	P6L	cCc	cTc	3	3	B	0.000383
N	6	P6L	cCc	cTc	3	3	B.1.1.482	0.069767
N	6	P6L	cCc	cTc	3	3	B.1.177.81	0.000568
N	6	P6L	cCc	cTc	3	3	B.1.438	0.019608
N	6	P6L	cCc	cTc	3	3	B.1.609	0.001438
N	6	P6L	cCc	cTc	3	3	C.2	0.048387
N	6	P6L	cCc	cTc	3	3	P.1.7	0.000958
N	6	P6L	cCc	cTc	2	2	A.21	0.00554
N	6	P6L	cCc	cTc	2	2	AY.113	0.000285
N	6	P6L	cCc	cTc	2	2	AY.30	0.000791
N	6	P6L	cCc	cTc	2	2	AY.45	0.000243
N	6	P6L	cCc	cTc	2	2	AY.46.2	0.001271
N	6	P6L	cCc	cTc	2	2	AY.5.4	0.000553
N	6	P6L	cCc	cTc	2	2	AY.52	0.001629
N	6	P6L	cCc	cTc	2	2	AY.54	0.000191
N	6	P6L	cCc	cTc	2	2	AY.59	0.001059
N	6	P6L	cCc	cTc	2	2	AY.66	0.002139
N	6	P6L	cCc	cTc	2	2	AY.75.1	0.000361
N	6	P6L	cCc	cTc	2	2	AY.82	0.002714
N	6	P6L	cCc	cTc	2	2	AY.85	0.000854
N	6	P6L	cCc	cTc	2	2	AY.89	0.009804
N	6	P6L	cCc	cTc	2	2	B.1.1.220	0.003717
N	6	P6L	cCc	cTc	2	2	B.1.1.284	0.000215
N	6	P6L	cCc	cTc	2	2	B.1.1.356	0.017094
N	6	P6L	cCc	cTc	2	2	B.1.1.416	0.00181
N	6	P6L	cCc	cTc	2	2	B.1.110.3	0.001437
N	6	P6L	cCc	cTc	2	2	B.1.177.54	0.001213
N	6	P6L	cCc	cTc	2	2	B.1.177.87	0.001456
N	6	P6L	cCc	cTc	2	2	B.1.427	0.000101
N	6	P6L	cCc	cTc	2	2	B.1.507	0.022472
N	6	P6L	cCc	cTc	2	2	B.1.525	0.000226
N	6	P6L	cCc	cTc	2	2	B.1.557	0.1
N	6	P6L	cCc	cTc	2	2	B.1.597	0.009259
N	6	P6L	cCc	cTc	2	2	B.1.637	0.000146
N	6	P6L	cCc	cTc	2	2	L.2	0.022727
N	6	P6L	cCc	cTc	2	2	P.1.13	0.001797
N	6	P6L	cCc	cTc	2	2	P.2	0.000373
N	6	P6L	cCc	cTc	1	1	A.2.5.2	0.001572
N	6	P6L	cCc	cTc	1	1	AE.8	0.000489
N	6	P6L	cCc	cTc	1	1	AY.101	0.00049
N	6	P6L	cCc	cTc	1	1	AY.110	0.000113
N	6	P6L	cCc	cTc	1	1	AY.111	0.000183
N	6	P6L	cCc	cTc	1	1	AY.114	0.000231
N	6	P6L	cCc	cTc	1	1	AY.119	0.000035
N	6	P6L	cCc	cTc	1	1	AY.12	0.000316
N	6	P6L	cCc	cTc	1	1	AY.120.1	0.000321
N	6	P6L	cCc	cTc	1	1	AY.120.2	0.001285
N	6	P6L	cCc	cTc	1	1	AY.16.1	0.00047
N	6	P6L	cCc	cTc	1	1	AY.23.1	0.000417
N	6	P6L	cCc	cTc	1	1	AY.24	0.000431
N	6	P6L	cCc	cTc	1	1	AY.34	0.000097
N	6	P6L	cCc	cTc	1	1	AY.38	0.000499
N	6	P6L	cCc	cTc	1	1	AY.4.2.1	0.000149
N	6	P6L	cCc	cTc	1	1	AY.46.1	0.001027
N	6	P6L	cCc	cTc	1	1	AY.46.4	0.000165
N	6	P6L	cCc	cTc	1	1	AY.48	0.000465
N	6	P6L	cCc	cTc	1	1	AY.49	0.003195
N	6	P6L	cCc	cTc	1	1	AY.5.3	0.000337
N	6	P6L	cCc	cTc	1	1	AY.53	0.000288
N	6	P6L	cCc	cTc	1	1	AY.7.1	0.000113
N	6	P6L	cCc	cTc	1	1	AY.86	0.00083
N	6	P6L	cCc	cTc	1	1	AY.87	0.000833
N	6	P6L	cCc	cTc	1	1	AY.99.1	0.001553
N	6	P6L	cCc	cTc	1	1	B.1.1.1	0.000327
N	6	P6L	cCc	cTc	1	1	B.1.1.141	0.002012
N	6	P6L	cCc	cTc	1	1	B.1.1.176	0.000439
N	6	P6L	cCc	cTc	1	1	B.1.1.189	0.001513
N	6	P6L	cCc	cTc	1	1	B.1.1.216	0.00089
N	6	P6L	cCc	cTc	1	1	B.1.1.25	0.000569
N	6	P6L	cCc	cTc	1	1	B.1.1.302	0.002075
N	6	P6L	cCc	cTc	1	1	B.1.1.306	0.000438
N	6	P6L	cCc	cTc	1	1	B.1.1.389	0.006061
N	6	P6L	cCc	cTc	1	1	B.1.1.437	0.010417
N	6	P6L	cCc	cTc	1	1	B.1.1.525	0.005464
N	6	P6L	cCc	cTc	1	1	B.1.177.10	0.000878
N	6	P6L	cCc	cTc	1	1	B.1.177.12	0.000152
N	6	P6L	cCc	cTc	1	1	B.1.177.23	0.003236
N	6	P6L	cCc	cTc	1	1	B.1.177.41	0.0025
N	6	P6L	cCc	cTc	1	1	B.1.177.46	0.000918
N	6	P6L	cCc	cTc	1	1	B.1.177.74	0.015152
N	6	P6L	cCc	cTc	1	1	B.1.177.80	0.001912
N	6	P6L	cCc	cTc	1	1	B.1.177.9	0.001332
N	6	P6L	cCc	cTc	1	1	B.1.223	0.002778
N	6	P6L	cCc	cTc	1	1	B.1.236	0.002053
N	6	P6L	cCc	cTc	1	1	B.1.239	0.001221
N	6	P6L	cCc	cTc	1	1	B.1.258.17	0.000104
N	6	P6L	cCc	cTc	1	1	B.1.319	0.003049
N	6	P6L	cCc	cTc	1	1	B.1.351.2	0.000303
N	6	P6L	cCc	cTc	1	1	B.1.408	0.00369
N	6	P6L	cCc	cTc	1	1	B.1.459	0.004082
N	6	P6L	cCc	cTc	1	1	B.1.465	0.003802
N	6	P6L	cCc	cTc	1	1	B.1.466.2	0.000391
N	6	P6L	cCc	cTc	1	1	B.1.538	0.008065
N	6	P6L	cCc	cTc	1	1	B.1.561	0.000397
N	6	P6L	cCc	cTc	1	1	B.1.565	0.00081
N	6	P6L	cCc	cTc	1	1	B.1.580	0.004065
N	6	P6L	cCc	cTc	1	1	B.1.619	0.000871
N	6	P6L	cCc	cTc	1	1	B.1.621.1	0.000506
N	6	P6L	cCc	cTc	1	1	B.61	0.005747
N	6	P6L	cCc	cTc	1	1	C.37	0.000116
N	6	P6L	cCc	cTc	1	1	D.2	0.000075
N	6	P6L	cCc	cTc	1	1	N.3	0.005814
N	6	P6L	cCc	cTc	1	1	N.6	0.007092
N	6	P6L	cCc	cTc	1	1	N.9	0.005952
N	6	P6L	cCc	cTc	1	1	P.1.12	0.000484
N	6	P6L	cCc	cTc	1	1	P.1.15	0.000232
N	6	P6L	cCc	cTc	1	1	Q.1	0.000126
N	6	P6L	cCc	cTc	1	1	Z.1	0.00289

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.