CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : Mut = P365S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N365P365SnonsynCcaTca23495234830.99948929366-29368
N365P365SnonsynCCAAGC2349550.00021281129366-29368
N365P365SnonsynCCAAGT2349540.00017024929366-29368
N365P365SnonsynCcATcC2349520.000085124529366-29368
N365P365SnonsynCcATcG2349510.000042562229366-29368

Details of the mutation P365S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N365P365SCcaTca2348323495All0.004491
N365P365SCCAAGC523495All0.000001
N365P365SCCAAGT423495All0.000001
N365P365SCcATcC223495All0
N365P365SCcATcG123495All0
N365P365SCcaTca64856485B.1.1770.085392
N365P365SCcaTca60166016B.1.177.120.912621
N365P365SCcaTca15741574A.2.50.785429
N365P365SCcaTca12131213B.1.177.350.838286
N365P365SCcaTca10351035B.1.177.420.92576
N365P365SCcaTca943943B.1.177.440.489362
N365P365SCcaTca879888B.1.1.70.000787
N365P365SCCAAGC4888B.1.1.70.000004
N365P365SCCAAGT4888B.1.1.70.000004
N365P365SCcATcG1888B.1.1.70.000001
N365P365SCcaTca585585B.1.177.110.993209
N365P365SCcaTca563563B.1.177.330.925987
N365P365SCcaTca499499A.2.5.20.784591
N365P365SCcaTca405405AY.40.00063
N365P365SCcaTca390390B.1.177.410.975
N365P365SCcaTca324324B.1.177.430.478582
N365P365SCcaTca179179A.2.5.10.860577
N365P365SCcaTca173173B.1.177.400.891753
N365P365SCcaTca159159B.1.10.002884
N365P365SCcaTca156158B.10.001429
N365P365SCcATcC2158B.10.000018
N365P365SCcaTca112112AY.30.001114
N365P365SCcaTca103103B.1.617.20.000388
N365P365SCcaTca9595AY.9.20.003489
N365P365SCcaTca9090B.1.177.380.9375
N365P365SCcaTca8383AY.430.000368
N365P365SCcaTca7878A.2.5.30.804124
N365P365SCcaTca7777AY.250.000463
N365P365SCcaTca6969B.1.4290.001623
N365P365SCcaTca6666B.1.20.000581
N365P365SCcaTca6565AY.440.000396
N365P365SCcaTca6262B.1.177.361
N365P365SCcaTca6060B.1.177.390.923077
N365P365SCcaTca4646B.1.160.300.136905
N365P365SCcaTca4041P.10.00063
N365P365SCCAAGC141P.10.000016
N365P365SCcaTca4040AY.1030.000248
N365P365SCcaTca3333B.1.177.370.891892
N365P365SCcaTca2929B.1.4270.001464
N365P365SCcaTca2828B.1.2820.41791
N365P365SCcaTca2626B.1.177.570.007305
N365P365SCcaTca2323B.1.360.003356
N365P365SCcaTca1717B.1.1.5190.000675
N365P365SCcaTca1717P.1.150.00395
N365P365SCcaTca1616B.1.1.4200.016097
N365P365SCcaTca1616B.1.177.340.842105
N365P365SCcaTca1515B.1.3510.000446
N365P365SCcaTca1414AY.390.000346
N365P365SCcaTca1414B0.001789
N365P365SCcaTca1313B.1.1600.000405
N365P365SCcaTca1313B.1.177.60.012695
N365P365SCcaTca1313B.1.5260.000306
N365P365SCcaTca1212AY.1200.000446
N365P365SCcaTca1212AY.540.001144
N365P365SCcaTca1111AY.4.20.000239
N365P365SCcaTca1111AY.50.000227
N365P365SCcaTca1111B.1.177.750.011446
N365P365SCcaTca1111B.1.5250.001245
N365P365SCcaTca1010AY.1020.000265
N365P365SCcaTca1010B.1.1.2770.007587
N365P365SCcaTca99AY.290.000142
N365P365SCcaTca99AY.46.40.001481
N365P365SCcaTca99B.1.2580.000599
N365P365SCcaTca99B.1.3880.818182
N365P365SCcaTca99B.1.5170.003843
N365P365SCcaTca88B.1.1.4330.011396
N365P365SCcaTca88B.1.177.90.010652
N365P365SCcaTca77AY.1040.013889
N365P365SCcaTca77AY.920.002011
N365P365SCcaTca77B.1.5030.017413
N365P365SCcaTca66AY.1000.000276
N365P365SCcaTca66AY.260.00017
N365P365SCcaTca66AY.39.10.000238
N365P365SCcaTca66AY.90.000406
N365P365SCcaTca66B.1.1.3720.004132
N365P365SCcaTca66B.1.160.320.025751
N365P365SCcaTca66B.1.2430.000418
N365P365SCcaTca66B.1.3750.004918
N365P365SCcaTca66B.1.416.10.009375
N365P365SCcaTca66C.360.005464
N365P365SCcaTca55AY.100.00265
N365P365SCcaTca55AY.1110.000916
N365P365SCcaTca55AY.1190.000177
N365P365SCcaTca55AY.200.000194
N365P365SCcaTca55AY.98.10.000242
N365P365SCcaTca55AY.99.20.000461
N365P365SCcaTca55B.1.1.2140.000277
N365P365SCcaTca55B.1.6210.000443
N365P365SCcaTca55R.10.00045
N365P365SCcaTca44AY.1130.00057
N365P365SCcaTca44AY.1210.000541
N365P365SCcaTca44AY.230.000279
N365P365SCcaTca44B.1.1.1980.005874
N365P365SCcaTca44B.1.1.2730.027027
N365P365SCcaTca44B.1.1.3180.001207
N365P365SCcaTca44B.1.177.210.000306
N365P365SCcaTca44B.1.177.310.045977
N365P365SCcaTca44B.1.177.860.000734
N365P365SCcaTca44B.1.2210.000284
N365P365SCcaTca44B.1.466.20.001565
N365P365SCcaTca44D.20.0003
N365P365SCcaTca44P.1.120.001936
N365P365SCcaTca33AY.1170.000254
N365P365SCcaTca33AY.1180.000188
N365P365SCcaTca33AY.4.30.002525
N365P365SCcaTca33AY.450.000365
N365P365SCcaTca33AY.570.001969
N365P365SCcaTca33B.1.1.280.000934
N365P365SCcaTca33B.1.1.3890.018182
N365P365SCcaTca33B.1.1.390.001529
N365P365SCcaTca33B.1.177.170.002463
N365P365SCcaTca33B.1.177.730.001699
N365P365SCcaTca33B.1.258.170.000312
N365P365SCcaTca33B.1.36.180.001261
N365P365SCcaTca33B.1.5060.071429
N365P365SCcaTca33C.370.000348
N365P365SCcaTca33P.1.140.000143
N365P365SCcaTca22A.23.10.001408
N365P365SCcaTca22AY.1100.000225
N365P365SCcaTca22AY.1140.000462
N365P365SCcaTca22AY.140.000176
N365P365SCcaTca22AY.270.000129
N365P365SCcaTca22AY.3.10.000171
N365P365SCcaTca22AY.460.000208
N365P365SCcaTca22AY.7.10.000225
N365P365SCcaTca22AY.750.000112
N365P365SCcaTca22AY.980.000158
N365P365SCcaTca22B.1.1.1760.000879
N365P365SCcaTca22B.1.1.3480.001592
N365P365SCcaTca22B.1.1.4320.002532
N365P365SCcaTca22B.1.160.100.016129
N365P365SCcaTca22B.1.177.30.015267
N365P365SCcaTca22B.1.177.450.000762
N365P365SCcaTca22B.1.177.50.002484
N365P365SCcaTca22B.1.177.520.003515
N365P365SCcaTca22B.1.177.650.001331
N365P365SCcaTca22B.1.2390.002442
N365P365SCcaTca22B.1.36.390.004435
N365P365SCcaTca22B.1.390.007812
N365P365SCcaTca22B.1.4690.00722
N365P365SCcaTca22B.1.5950.000522
N365P365SCcaTca22B.1.5960.000174
N365P365SCcaTca22B.1.617.10.000258
N365P365SCcaTca22B.1.6280.000705
N365P365SCcaTca22P.1.160.000748
N365P365SCcaTca22P.20.000373
N365P365SCcaTca22Q.80.00033
N365P365SCcaTca11A0.000387
N365P365SCcaTca11A.10.000282
N365P365SCcaTca11A.20.000662
N365P365SCcaTca11AD.20.000219
N365P365SCcaTca11AW.10.003049
N365P365SCcaTca11AY.1060.000335
N365P365SCcaTca11AY.1080.001103
N365P365SCcaTca11AY.1160.000287
N365P365SCcaTca11AY.160.00038
N365P365SCcaTca11AY.330.000067
N365P365SCcaTca11AY.340.000097
N365P365SCcaTca11AY.34.10.00051
N365P365SCcaTca11AY.350.000233
N365P365SCcaTca11AY.4.40.000409
N365P365SCcaTca11AY.4.50.000107
N365P365SCcaTca11AY.470.000031
N365P365SCcaTca11AY.490.003195
N365P365SCcaTca11AY.5.40.000277
N365P365SCcaTca11AY.510.000909
N365P365SCcaTca11AY.550.000917
N365P365SCcaTca11AY.590.00053
N365P365SCcaTca11AY.60.000041
N365P365SCcaTca11AY.610.000105
N365P365SCcaTca11AY.620.000436
N365P365SCcaTca11AY.70.000196
N365P365SCcaTca11AY.700.000209
N365P365SCcaTca11AY.710.000475
N365P365SCcaTca11AY.720.001361
N365P365SCcaTca11AY.740.000116
N365P365SCcaTca11AY.9.10.000084
N365P365SCcaTca11AY.910.00073
N365P365SCcaTca11AY.960.002075
N365P365SCcaTca11AY.990.001049
N365P365SCcaTca11B.1.1.1250.010204
N365P365SCcaTca11B.1.1.1370.0125
N365P365SCcaTca11B.1.1.1890.001513
N365P365SCcaTca11B.1.1.2200.001859
N365P365SCcaTca11B.1.1.2650.003155
N365P365SCcaTca11B.1.1.2690.001353
N365P365SCcaTca11B.1.1.270.00565
N365P365SCcaTca11B.1.1.2940.001266
N365P365SCcaTca11B.1.1.3020.002075
N365P365SCcaTca11B.1.1.3040.002809
N365P365SCcaTca11B.1.1.3150.008475
N365P365SCcaTca11B.1.1.330.000421
N365P365SCcaTca11B.1.1.370.000193
N365P365SCcaTca11B.1.1.3850.004464
N365P365SCcaTca11B.1.1.5210.005348
N365P365SCcaTca11B.1.1.700.000341
N365P365SCcaTca11B.1.1.830.00271
N365P365SCcaTca11B.1.1470.000756
N365P365SCcaTca11B.1.1570.002985
N365P365SCcaTca11B.1.1700.00431
N365P365SCcaTca11B.1.177.230.003236
N365P365SCcaTca11B.1.177.500.004695
N365P365SCcaTca11B.1.177.810.000189
N365P365SCcaTca11B.1.177.840.006667
N365P365SCcaTca11B.1.1790.003759
N365P365SCcaTca11B.1.2060.000816
N365P365SCcaTca11B.1.214.20.0006
N365P365SCcaTca11B.1.2220.001692
N365P365SCcaTca11B.1.2340.000132
N365P365SCcaTca11B.1.2400.000216
N365P365SCcaTca11B.1.258.110.000396
N365P365SCcaTca11B.1.258.210.007752
N365P365SCcaTca11B.1.258.40.003448
N365P365SCcaTca11B.1.2600.003344
N365P365SCcaTca11B.1.36.220.001208
N365P365SCcaTca11B.1.36.370.002778
N365P365SCcaTca11B.1.36.80.001
N365P365SCcaTca11B.1.3600.012658
N365P365SCcaTca11B.1.3710.001122
N365P365SCcaTca11B.1.3960.000706
N365P365SCcaTca11B.1.4970.000315
N365P365SCcaTca11B.1.5400.009709
N365P365SCcaTca11B.1.5610.000397
N365P365SCcaTca11B.1.5650.00081
N365P365SCcaTca11B.1.5750.000303
N365P365SCcaTca11B.1.5760.000907
N365P365SCcaTca11B.1.5770.000687
N365P365SCcaTca11B.1.5850.027778
N365P365SCcaTca11B.1.5930.01087
N365P365SCcaTca11B.1.5970.00463
N365P365SCcaTca11B.1.6060.006024
N365P365SCcaTca11B.1.6090.000479
N365P365SCcaTca11B.1.6190.000871
N365P365SCcaTca11B.1.619.10.000641
N365P365SCcaTca11B.1.621.10.000506
N365P365SCcaTca11B.1.6230.000536
N365P365SCcaTca11B.1.6270.00202
N365P365SCcaTca11B.1.6360.006711
N365P365SCcaTca11B.550.00295
N365P365SCcaTca11C.350.000774
N365P365SCcaTca11N.50.001767
N365P365SCcaTca11N.90.005952
N365P365SCcaTca11P.1.40.000977
N365P365SCcaTca11P.1.90.004808
N365P365SCcaTca11P.30.001595
N365P365SCcaTca11W.10.008696
N365P365SCcaTca11W.30.005263

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.