CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
N | 365 | P365P | syn | ccA | ccT | 1300 | 1093 | 0.840769 | 29366-29368 | |
N | 365 | P365P | syn | ccA | ccG | 1300 | 155 | 0.119231 | 29366-29368 | |
N | 365 | P365P | syn | ccA | ccC | 1300 | 52 | 0.04 | 29366-29368 |
Details of the mutation P365P within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
N | 365 | P365P | ccA | ccT | 1093 | 1300 | All | 0.000209 |
N | 365 | P365P | ccA | ccG | 155 | 1300 | All | 0.00003 |
N | 365 | P365P | ccA | ccC | 52 | 1300 | All | 0.00001 |
N | 365 | P365P | ccA | ccT | 780 | 780 | AU.1 | 0.987342 |
N | 365 | P365P | ccA | ccG | 59 | 129 | B.1.1.7 | 0.000053 |
N | 365 | P365P | ccA | ccC | 36 | 129 | B.1.1.7 | 0.000032 |
N | 365 | P365P | ccA | ccT | 34 | 129 | B.1.1.7 | 0.00003 |
N | 365 | P365P | ccA | ccT | 86 | 86 | B.1.427 | 0.004343 |
N | 365 | P365P | ccA | ccT | 61 | 71 | AY.4 | 0.000095 |
N | 365 | P365P | ccA | ccG | 9 | 71 | AY.4 | 0.000014 |
N | 365 | P365P | ccA | ccC | 1 | 71 | AY.4 | 0.000002 |
N | 365 | P365P | ccA | ccT | 15 | 22 | B.1 | 0.000137 |
N | 365 | P365P | ccA | ccC | 4 | 22 | B.1 | 0.000037 |
N | 365 | P365P | ccA | ccG | 3 | 22 | B.1 | 0.000027 |
N | 365 | P365P | ccA | ccT | 20 | 21 | AY.6 | 0.000823 |
N | 365 | P365P | ccA | ccG | 1 | 21 | AY.6 | 0.000041 |
N | 365 | P365P | ccA | ccT | 11 | 13 | B.1.617.2 | 0.000041 |
N | 365 | P365P | ccA | ccG | 2 | 13 | B.1.617.2 | 0.000008 |
N | 365 | P365P | ccA | ccT | 6 | 12 | B.1.2 | 0.000053 |
N | 365 | P365P | ccA | ccG | 5 | 12 | B.1.2 | 0.000044 |
N | 365 | P365P | ccA | ccC | 1 | 12 | B.1.2 | 0.000009 |
N | 365 | P365P | ccA | ccG | 6 | 10 | AY.44 | 0.000037 |
N | 365 | P365P | ccA | ccT | 3 | 10 | AY.44 | 0.000018 |
N | 365 | P365P | ccA | ccC | 1 | 10 | AY.44 | 0.000006 |
N | 365 | P365P | ccA | ccG | 9 | 10 | B.1.1 | 0.000163 |
N | 365 | P365P | ccA | ccT | 1 | 10 | B.1.1 | 0.000018 |
N | 365 | P365P | ccA | ccT | 8 | 9 | B.1.466.2 | 0.00313 |
N | 365 | P365P | ccA | ccG | 1 | 9 | B.1.466.2 | 0.000391 |
N | 365 | P365P | ccA | ccG | 5 | 8 | AY.3 | 0.00005 |
N | 365 | P365P | ccA | ccT | 3 | 8 | AY.3 | 0.00003 |
N | 365 | P365P | ccA | ccT | 8 | 8 | B.1.429 | 0.000188 |
N | 365 | P365P | ccA | ccT | 5 | 8 | P.1 | 0.000079 |
N | 365 | P365P | ccA | ccG | 2 | 8 | P.1 | 0.000032 |
N | 365 | P365P | ccA | ccC | 1 | 8 | P.1 | 0.000016 |
N | 365 | P365P | ccA | ccG | 7 | 7 | B.1.234 | 0.000924 |
N | 365 | P365P | ccA | ccT | 5 | 6 | AY.20 | 0.000194 |
N | 365 | P365P | ccA | ccG | 1 | 6 | AY.20 | 0.000039 |
N | 365 | P365P | ccA | ccG | 2 | 5 | AY.43 | 0.000009 |
N | 365 | P365P | ccA | ccT | 2 | 5 | AY.43 | 0.000009 |
N | 365 | P365P | ccA | ccC | 1 | 5 | AY.43 | 0.000004 |
N | 365 | P365P | ccA | ccG | 5 | 5 | B.1.1.519 | 0.000199 |
N | 365 | P365P | ccA | ccT | 3 | 4 | B.1.177 | 0.00004 |
N | 365 | P365P | ccA | ccG | 1 | 4 | B.1.177 | 0.000013 |
N | 365 | P365P | ccA | ccG | 4 | 4 | B.1.595 | 0.001044 |
N | 365 | P365P | ccA | ccG | 2 | 3 | AY.120 | 0.000074 |
N | 365 | P365P | ccA | ccT | 1 | 3 | AY.120 | 0.000037 |
N | 365 | P365P | ccA | ccT | 2 | 3 | AY.25 | 0.000012 |
N | 365 | P365P | ccA | ccG | 1 | 3 | AY.25 | 0.000006 |
N | 365 | P365P | ccA | ccG | 2 | 3 | AY.33 | 0.000134 |
N | 365 | P365P | ccA | ccT | 1 | 3 | AY.33 | 0.000067 |
N | 365 | P365P | ccA | ccG | 3 | 3 | AY.61 | 0.000314 |
N | 365 | P365P | ccA | ccC | 3 | 3 | B.1.177.81 | 0.000568 |
N | 365 | P365P | ccA | ccT | 3 | 3 | B.1.243 | 0.000209 |
N | 365 | P365P | ccA | ccT | 3 | 3 | B.1.459 | 0.012245 |
N | 365 | P365P | ccA | ccT | 3 | 3 | B.1.637 | 0.000219 |
N | 365 | P365P | ccA | ccG | 3 | 3 | N.9 | 0.017857 |
N | 365 | P365P | ccA | ccC | 2 | 2 | 0.111111 | |
N | 365 | P365P | ccA | ccG | 2 | 2 | AY.102 | 0.000053 |
N | 365 | P365P | ccA | ccT | 2 | 2 | AY.26 | 0.000057 |
N | 365 | P365P | ccA | ccG | 1 | 2 | AY.39 | 0.000025 |
N | 365 | P365P | ccA | ccT | 1 | 2 | AY.39 | 0.000025 |
N | 365 | P365P | ccA | ccT | 2 | 2 | AY.53 | 0.000575 |
N | 365 | P365P | ccA | ccG | 2 | 2 | AY.79 | 0.002421 |
N | 365 | P365P | ccA | ccG | 2 | 2 | B.1.1.222 | 0.000408 |
N | 365 | P365P | ccA | ccT | 1 | 2 | B.1.160 | 0.000031 |
N | 365 | P365P | ccA | ccG | 1 | 2 | B.1.160 | 0.000031 |
N | 365 | P365P | ccA | ccG | 2 | 2 | B.1.218 | 0.010309 |
N | 365 | P365P | ccA | ccT | 1 | 2 | B.1.221 | 0.000071 |
N | 365 | P365P | ccA | ccG | 1 | 2 | B.1.221 | 0.000071 |
N | 365 | P365P | ccA | ccT | 2 | 2 | B.1.260 | 0.006689 |
N | 365 | P365P | ccA | ccT | 2 | 2 | B.1.311 | 0.000549 |
N | 365 | P365P | ccA | ccT | 1 | 2 | B.1.526 | 0.000024 |
N | 365 | P365P | ccA | ccG | 1 | 2 | B.1.526 | 0.000024 |
N | 365 | P365P | ccA | ccG | 2 | 2 | B.1.588 | 0.00182 |
N | 365 | P365P | ccA | ccT | 2 | 2 | B.1.596 | 0.000174 |
N | 365 | P365P | ccA | ccT | 1 | 1 | A.1 | 0.000282 |
N | 365 | P365P | ccA | ccT | 1 | 1 | AY.103 | 0.000006 |
N | 365 | P365P | ccA | ccT | 1 | 1 | AY.106 | 0.000335 |
N | 365 | P365P | ccA | ccG | 1 | 1 | AY.119 | 0.000035 |
N | 365 | P365P | ccA | ccT | 1 | 1 | AY.23 | 0.00007 |
N | 365 | P365P | ccA | ccG | 1 | 1 | AY.29 | 0.000016 |
N | 365 | P365P | ccA | ccG | 1 | 1 | AY.3.1 | 0.000085 |
N | 365 | P365P | ccA | ccC | 1 | 1 | AY.30 | 0.000396 |
N | 365 | P365P | ccA | ccT | 1 | 1 | AY.39.1 | 0.00004 |
N | 365 | P365P | ccA | ccT | 1 | 1 | AY.4.2 | 0.000022 |
N | 365 | P365P | ccA | ccT | 1 | 1 | AY.46.4 | 0.000165 |
N | 365 | P365P | ccA | ccG | 1 | 1 | AY.75 | 0.000056 |
N | 365 | P365P | ccA | ccC | 1 | 1 | AY.9.2 | 0.000037 |
N | 365 | P365P | ccA | ccT | 1 | 1 | B.1.1.25 | 0.000569 |
N | 365 | P365P | ccA | ccT | 1 | 1 | B.1.1.253 | 0.002506 |
N | 365 | P365P | ccA | ccG | 1 | 1 | B.1.177.4 | 0.000211 |
N | 365 | P365P | ccA | ccT | 1 | 1 | B.1.222 | 0.001692 |
N | 365 | P365P | ccA | ccT | 1 | 1 | B.1.265 | 0.001271 |
N | 365 | P365P | ccA | ccG | 1 | 1 | B.1.306 | 0.005714 |
N | 365 | P365P | ccA | ccT | 1 | 1 | B.1.417 | 0.028571 |
N | 365 | P365P | ccA | ccT | 1 | 1 | B.1.462 | 0.007246 |
N | 365 | P365P | ccA | ccT | 1 | 1 | B.1.525 | 0.000113 |
N | 365 | P365P | ccA | ccT | 1 | 1 | C.37 | 0.000116 |
N | 365 | P365P | ccA | ccG | 1 | 1 | D.2 | 0.000075 |
N | 365 | P365P | ccA | ccG | 1 | 1 | P.1.15 | 0.000232 |
![]() |
![]() |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|