CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : Mut = P365L

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N365P365LnonsyncCacTa11217110500.98511229366-29368
N365P365LnonsynCCaTTa112171540.013729229366-29368
N365P365LnonsyncCAcTT1121740.00035660229366-29368
N365P365LnonsyncCAcTC1121740.00035660229366-29368
N365P365LnonsyncCAcTG1121730.00026745129366-29368
N365P365LnonsynCCATTG1121720.00017830129366-29368

Details of the mutation P365L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N365P365LcCacTa1105011217All0.002113
N365P365LCCaTTa15411217All0.000029
N365P365LcCAcTT411217All0.000001
N365P365LcCAcTC411217All0.000001
N365P365LcCAcTG311217All0.000001
N365P365LCCATTG211217All0
N365P365LcCacTa40014001AY.40.006227
N365P365LcCacTa18951912B.1.1.70.001696
N365P365LCCaTTa61912B.1.1.70.000005
N365P365LcCAcTC41912B.1.1.70.000004
N365P365LcCAcTT31912B.1.1.70.000003
N365P365LcCAcTG21912B.1.1.70.000002
N365P365LCCATTG21912B.1.1.70.000002
N365P365LcCacTa12151215AY.50.025089
N365P365LcCacTa665667AY.250.004
N365P365LCCaTTa2667AY.250.000012
N365P365LcCacTa355355B.1.617.20.001337
N365P365LcCacTa330330AY.440.002009
N365P365LcCacTa213239B.1.1770.002805
N365P365LCCaTTa26239B.1.1770.000342
N365P365LcCacTa205205AY.510.186364
N365P365LcCacTa184184B.1.20.00162
N365P365LcCacTa118118AY.200.004586
N365P365LcCacTa104104AY.1030.000646
N365P365LcCacTa8080B.1.5260.00188
N365P365LcCacTa7677AY.30.000756
N365P365LCCaTTa177AY.30.00001
N365P365LcCacTa7374AY.430.000323
N365P365LcCAcTG174AY.430.000004
N365P365LcCacTa7070B.1.6370.005115
N365P365LCCaTTa6969B.1.177.350.047685
N365P365LcCacTa6767B.1.1.2220.013668
N365P365LcCacTa5858B.1.3510.001724
N365P365LcCacTa5858P.10.000914
N365P365LcCacTa5353AY.4.20.00115
N365P365LcCacTa5151AY.260.001444
N365P365LcCacTa4949AY.1180.00307
N365P365LcCacTa4949AY.390.001211
N365P365LCCaTTa3746B.1.2210.002628
N365P365LcCacTa946B.1.2210.000639
N365P365LcCacTa4646B.1.4290.001082
N365P365LcCacTa4041B.10.000366
N365P365LCCaTTa141B.10.000009
N365P365LcCacTa4141B.1.1.250.023309
N365P365LcCacTa4040B.1.1.3380.689655
N365P365LcCacTa3939B.1.1.280.012138
N365P365LcCacTa3838B.1.10.000689
N365P365LcCacTa3434AY.290.000536
N365P365LcCacTa3334B.1.6270.066667
N365P365LCCaTTa134B.1.6270.00202
N365P365LcCacTa2828AY.39.10.001109
N365P365LcCacTa2828Q.10.003537
N365P365LcCacTa2525B.1.596.10.233645
N365P365LcCacTa2424AY.1020.000636
N365P365LcCacTa1919AY.1090.014053
N365P365LcCacTa1717AY.9.20.000624
N365P365LcCacTa1717B.1.1.5190.000675
N365P365LcCacTa1717B.1.2370.084577
N365P365LcCacTa1616B.1.2340.002111
N365P365LcCacTa1414B.1.1600.000437
N365P365LcCacTa1414P.1.140.000669
N365P365LcCacTa1313AY.1000.000598
N365P365LcCacTa1313AY.750.000728
N365P365LcCacTa1313B.1.1.3070.032911
N365P365LcCacTa1313B.1.1.3160.012026
N365P365LcCacTa1213C.370.001393
N365P365LcCAcTT113C.370.000116
N365P365LcCacTa1212AY.1190.000424
N365P365LcCacTa1212AY.420.000483
N365P365LcCacTa1212P.20.00224
N365P365LcCacTa1111AY.330.000735
N365P365LcCacTa1010AM.40.035714
N365P365LcCacTa1010AY.1200.000372
N365P365LcCacTa1010B.1.1.330.004209
N365P365LcCacTa1010B.1.5250.001132
N365P365LcCacTa1010B.1.6210.000885
N365P365LcCacTa99AY.980.000711
N365P365LCCaTTa78A.2.50.003493
N365P365LcCacTa18A.2.50.000499
N365P365LcCacTa88AY.370.002528
N365P365LcCacTa88B.1.2580.000532
N365P365LcCacTa88B.1.4270.000404
N365P365LcCacTa88D.20.0006
N365P365LcCacTa77B.1.1.630.002701
N365P365LcCacTa77B.1.5170.002989
N365P365LcCacTa66A.10.001691
N365P365LcCacTa66AY.610.000629
N365P365LcCacTa66B.1.1.10.00196
N365P365LcCacTa66B.1.2430.000418
N365P365LcCacTa66B.1.360.000875
N365P365LcCacTa66B.1.5950.001566
N365P365LcCacTa55AY.1130.000712
N365P365LcCacTa55AY.230.000349
N365P365LcCacTa55AY.410.00147
N365P365LcCacTa55B.1.258.170.00052
N365P365LcCacTa55B.1.2650.006353
N365P365LcCacTa55B.1.4560.01634
N365P365LcCacTa44AY.1140.000924
N365P365LcCacTa44AY.60.000165
N365P365LcCacTa44B.1.1.390.002039
N365P365LcCacTa44B.1.177.200.00607
N365P365LcCacTa44B.1.4590.016327
N365P365LcCacTa44C.36.30.002269
N365P365LcCacTa33AY.360.000445
N365P365LcCacTa33AY.450.000365
N365P365LcCacTa33AY.460.000312
N365P365LcCacTa33AY.470.000093
N365P365LcCacTa33AY.740.000347
N365P365LcCacTa33AY.860.00249
N365P365LcCacTa33AY.99.20.000276
N365P365LcCacTa33AZ.50.010526
N365P365LcCacTa33B.1.1.2160.002671
N365P365LcCacTa33B.1.1.3060.001315
N365P365LcCacTa33B.1.1.3170.001235
N365P365LcCacTa33B.1.1.3180.000905
N365P365LcCacTa33B.1.1.3740.007126
N365P365LcCacTa33B.1.110.30.002155
N365P365LcCacTa33B.1.160.140.006356
N365P365LcCacTa33B.1.177.150.001893
N365P365LcCacTa33B.1.177.570.000843
N365P365LcCacTa33B.1.177.860.00055
N365P365LcCacTa33B.1.2400.000647
N365P365LcCacTa33B.1.258.140.002941
N365P365LcCacTa33B.1.3110.000824
N365P365LcCacTa33B.1.3320.01049
N365P365LcCacTa33B.1.4950.027273
N365P365LcCacTa33B.1.5610.001191
N365P365LcCacTa33B.1.5960.000261
N365P365LcCacTa33B.1.6230.001609
N365P365LcCacTa33Q.40.001364
N365P365LcCacTa22AY.1110.000366
N365P365LcCacTa22AY.1170.000169
N365P365LcCacTa22AY.130.000322
N365P365LcCacTa22AY.3.10.000171
N365P365LcCacTa22AY.4.2.10.000298
N365P365LcCacTa22AY.46.20.001271
N365P365LcCacTa22AY.480.00093
N365P365LcCacTa22AY.540.000191
N365P365LcCacTa22AY.630.000774
N365P365LcCacTa22AY.710.00095
N365P365LcCacTa22AY.9.10.000167
N365P365LcCacTa22AY.98.10.000097
N365P365LcCacTa22B0.000256
N365P365LcCacTa22B.1.1.2820.023256
N365P365LcCacTa22B.1.1.2840.000215
N365P365LcCacTa22B.1.1.3030.005525
N365P365LcCacTa22B.1.1.3480.001592
N365P365LcCacTa22B.1.1.3540.008772
N365P365LcCacTa22B.1.1.4860.003155
N365P365LcCacTa22B.1.1160.023256
N365P365LCCaTTa22B.1.177.120.000303
N365P365LCCaTTa22B.1.177.420.001789
N365P365LcCacTa22B.1.1790.007519
N365P365LcCacTa22B.1.1990.008264
N365P365LcCacTa22B.1.2060.001631
N365P365LcCacTa22B.1.214.20.001199
N365P365LcCacTa22B.1.36.290.001035
N365P365LcCacTa22B.1.36.70.008
N365P365LcCacTa22B.1.36.80.002
N365P365LcCacTa22B.1.4000.000858
N365P365LcCacTa22B.1.4650.007605
N365P365LcCacTa22B.1.466.20.000782
N365P365LcCacTa22B.1.5240.002813
N365P365LcCacTa22B.1.5700.005882
N365P365LcCacTa22B.1.6380.105263
N365P365LcCacTa22P.1.120.000968
N365P365LcCacTa22P.1.170.000324
N365P365LcCacTa22Q.80.00033
N365P365LcCacTa22R.10.00018
N365P365LcCacTa11A.270.001656
N365P365LcCacTa11AD.20.000219
N365P365LcCacTa11AE.80.000489
N365P365LcCacTa11AY.10.000396
N365P365LcCacTa11AY.1060.000335
N365P365LcCacTa11AY.1160.000287
N365P365LcCacTa11AY.120.000316
N365P365LcCacTa11AY.1210.000135
N365P365LcCacTa11AY.140.000088
N365P365LcCacTa11AY.23.10.000417
N365P365LcCacTa11AY.240.000431
N365P365LcCacTa11AY.270.000065
N365P365LcCacTa11AY.300.000396
N365P365LcCacTa11AY.340.000097
N365P365LcCacTa11AY.350.000233
N365P365LcCacTa11AY.380.000499
N365P365LcCacTa11AY.4.50.000107
N365P365LcCacTa11AY.46.10.001027
N365P365LcCacTa11AY.46.60.000072
N365P365LcCacTa11AY.490.003195
N365P365LcCacTa11AY.5.40.000277
N365P365LcCacTa11AY.590.00053
N365P365LcCacTa11AY.70.000196
N365P365LcCacTa11AY.75.10.00018
N365P365LcCacTa11AY.780.001541
N365P365LcCacTa11AY.840.000437
N365P365LcCacTa11AY.910.00073
N365P365LcCacTa11AY.920.000287
N365P365LcCacTa11B.1.1.1530.001095
N365P365LcCacTa11B.1.1.2250.007194
N365P365LcCacTa11B.1.1.2440.015385
N365P365LcCacTa11B.1.1.2540.011236
N365P365LcCacTa11B.1.1.2630.001558
N365P365LcCacTa11B.1.1.2990.012195
N365P365LcCacTa11B.1.1.3010.001179
N365P365LcCacTa11B.1.1.3690.000446
N365P365LcCacTa11B.1.1.3980.003226
N365P365LcCacTa11B.1.1.4160.000905
N365P365LcCacTa11B.1.1.460.004367
N365P365LcCacTa11B.1.1.4820.023256
N365P365LcCacTa11B.1.1.5130.012346
N365P365LcCacTa11B.1.1.5230.001563
N365P365LcCacTa11B.1.1.700.000341
N365P365LcCacTa11B.1.1040.00369
N365P365LcCacTa11B.1.177.160.000664
N365P365LcCacTa11B.1.177.170.000821
N365P365LcCacTa11B.1.177.40.000211
N365P365LcCacTa11B.1.177.50.001242
N365P365LcCacTa11B.1.177.60.000977
N365P365LcCacTa11B.1.177.650.000665
N365P365LcCacTa11B.1.177.720.00339
N365P365LcCacTa11B.1.177.730.000566
N365P365LcCacTa11B.1.2100.002132
N365P365LcCacTa11B.1.221.30.000833
N365P365LcCacTa11B.1.2980.002114
N365P365LcCacTa11B.1.3380.008621
N365P365LcCacTa11B.1.3490.000715
N365P365LcCacTa11B.1.36.10.00114
N365P365LcCacTa11B.1.36.180.00042
N365P365LcCacTa11B.1.36.220.001208
N365P365LcCacTa11B.1.36.350.002604
N365P365LcCacTa11B.1.36.360.000602
N365P365LcCacTa11B.1.36.380.001642
N365P365LcCacTa11B.1.3620.001541
N365P365LcCacTa11B.1.3670.000792
N365P365LcCacTa11B.1.3710.001122
N365P365LcCacTa11B.1.4620.007246
N365P365LcCacTa11B.1.4690.00361
N365P365LcCacTa11B.1.4710.002732
N365P365LcCacTa11B.1.4780.011765
N365P365LcCacTa11B.1.5090.000866
N365P365LcCacTa11B.1.5770.000687
N365P365LcCacTa11B.1.617.30.002985
N365P365LcCacTa11B.1.621.10.000506
N365P365LcCacTa11B.1.9.50.005682
N365P365LcCacTa11C.1.20.004255
N365P365LcCacTa11C.350.000774
N365P365LcCacTa11C.360.000911
N365P365LcCacTa11D.30.005917
N365P365LcCacTa11Q.30.000145

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.