CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : Mut = P364L

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N364P364LnonsyncCacTa442644160.99774129363-29365
N364P364LnonsynCCaTTa442650.0011296929363-29365
N364P364LnonsyncCAcTC442640.00090375129363-29365
N364P364LnonsyncCAcTG442610.00022593829363-29365

Details of the mutation P364L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N364P364LcCacTa44164426All0.000845
N364P364LCCaTTa54426All0.000001
N364P364LcCAcTC44426All0.000001
N364P364LcCAcTG14426All0
N364P364LcCacTa23672370B.1.20.020842
N364P364LcCAcTC12370B.1.20.000009
N364P364LCCaTTa12370B.1.20.000009
N364P364LcCAcTG12370B.1.20.000009
N364P364LcCacTa380381B.1.617.20.001431
N364P364LCCaTTa1381B.1.617.20.000004
N364P364LcCacTa262263B.1.1.70.000235
N364P364LcCAcTC1263B.1.1.70.000001
N364P364LcCacTa170170AY.1020.004507
N364P364LcCacTa162162B.1.5730.987805
N364P364LcCacTa137137AY.40.000213
N364P364LcCacTa114116B.10.001044
N364P364LcCAcTC1116B.10.000009
N364P364LCCaTTa1116B.10.000009
N364P364LcCacTa6060B.1.10.001088
N364P364LcCacTa4949AY.440.000298
N364P364LcCacTa4242AY.430.000186
N364P364LcCacTa3739B.1.1600.001154
N364P364LcCAcTC139B.1.1600.000031
N364P364LCCaTTa139B.1.1600.000031
N364P364LcCacTa3939P.10.000614
N364P364LcCacTa3333P.1.140.001577
N364P364LcCacTa3030B.1.4290.000706
N364P364LcCacTa2525AY.390.000618
N364P364LcCacTa2525AY.470.000778
N364P364LcCacTa2323AY.98.10.001114
N364P364LcCacTa2222AY.30.000219
N364P364LcCacTa2121B.1.5960.00183
N364P364LcCacTa1818AY.1030.000112
N364P364LcCacTa1717B.1.4270.000858
N364P364LcCacTa1616AY.250.000096
N364P364LcCacTa1414B.1.1.4160.01267
N364P364LcCacTa1313AY.4.20.000282
N364P364LcCacTa1111AY.260.000311
N364P364LcCacTa1111B.1.1.3180.003319
N364P364LcCacTa910AY.980.000711
N364P364LCCaTTa110AY.980.000079
N364P364LcCacTa1010B.1.2580.000665
N364P364LcCacTa99P.20.00168
N364P364LcCacTa88AY.340.000776
N364P364LcCacTa88B.1.1.2140.000444
N364P364LcCacTa88B.1.1.2440.123077
N364P364LcCacTa88B.1.3510.000238
N364P364LcCacTa88B.1.4000.003432
N364P364LcCacTa77AY.450.000852
N364P364LcCacTa77B.1.2210.000497
N364P364LcCacTa77B.1.258.170.000728
N364P364LcCacTa66AY.1170.000507
N364P364LcCacTa66AY.460.000624
N364P364LcCacTa66AY.540.000572
N364P364LcCacTa66B.1.1.5190.000238
N364P364LcCacTa66B.30.004983
N364P364LcCacTa55AY.1110.000916
N364P364LcCacTa55AY.840.002187
N364P364LcCacTa55B0.000639
N364P364LcCacTa55B.1.1.500.003394
N364P364LcCacTa55B.1.6210.000443
N364P364LcCacTa44AY.1050.002572
N364P364LcCacTa44AY.1200.000149
N364P364LcCacTa44AY.210.00759
N364P364LcCacTa44AY.290.000063
N364P364LcCacTa44AY.820.005427
N364P364LcCacTa44B.1.1.4090.011331
N364P364LcCacTa44B.1.1770.000053
N364P364LcCacTa44B.1.2430.000278
N364P364LcCacTa33AY.34.10.00153
N364P364LcCacTa33AY.590.001589
N364P364LcCacTa33AY.740.000347
N364P364LcCacTa33AY.780.004622
N364P364LcCacTa33B.1.177.600.000655
N364P364LcCacTa33B.1.177.730.001699
N364P364LcCacTa33B.1.3690.000856
N364P364LcCacTa33B.1.466.20.001174
N364P364LcCacTa220.111111
N364P364LcCacTa22A0.000774
N364P364LcCacTa22AY.1000.000092
N364P364LcCacTa22AY.1160.000574
N364P364LcCacTa22AY.130.000322
N364P364LcCacTa22AY.200.000078
N364P364LcCacTa22AY.230.000139
N364P364LcCacTa22AY.330.000134
N364P364LcCacTa22AY.50.000041
N364P364LcCacTa22AY.5.30.000675
N364P364LcCacTa22AY.510.001818
N364P364LcCacTa22AY.600.001876
N364P364LcCacTa22AY.640.00119
N364P364LcCacTa22AY.70.000392
N364P364LcCacTa22AY.920.000575
N364P364LcCacTa22B.1.1.3110.000716
N364P364LcCacTa22B.1.177.770.001452
N364P364LcCacTa22B.1.3460.002621
N364P364LcCacTa22B.1.5260.000047
N364P364LcCacTa22B.1.5880.00182
N364P364LcCacTa22B.1.6230.001073
N364P364LcCacTa22B.1.6280.000705
N364P364LcCacTa22C.350.001548
N364P364LcCacTa22C.370.000232
N364P364LcCacTa22P.30.00319
N364P364LcCacTa22P.40.007605
N364P364LcCacTa22Q.10.000253
N364P364LcCacTa11A.230.010526
N364P364LcCacTa11AY.1080.001103
N364P364LcCacTa11AY.1100.000113
N364P364LcCacTa11AY.1180.000063
N364P364LcCacTa11AY.1190.000035
N364P364LcCacTa11AY.120.10.000321
N364P364LcCacTa11AY.140.000088
N364P364LcCacTa11AY.270.000065
N364P364LcCacTa11AY.3.10.000085
N364P364LcCacTa11AY.420.00004
N364P364LcCacTa11AY.46.20.000635
N364P364LcCacTa11AY.46.40.000165
N364P364LcCacTa11AY.530.000288
N364P364LcCacTa11AY.680.000274
N364P364LcCacTa11AY.700.000209
N364P364LcCacTa11AY.750.000056
N364P364LcCacTa11AY.90.000068
N364P364LcCacTa11AY.9.10.000084
N364P364LcCacTa11AY.99.20.000092
N364P364LcCacTa11B.1.1.1210.002427
N364P364LcCacTa11B.1.1.1530.001095
N364P364LcCacTa11B.1.1.1700.001247
N364P364LcCacTa11B.1.1.2510.007937
N364P364LcCacTa11B.1.1.2630.001558
N364P364LcCacTa11B.1.1.280.000311
N364P364LcCacTa11B.1.1.3060.000438
N364P364LcCacTa11B.1.1.3350.012987
N364P364LcCacTa11B.1.1.3720.000689
N364P364LcCacTa11B.1.1.3980.003226
N364P364LcCacTa11B.1.1.5070.008696
N364P364LcCacTa11B.1.1.630.000386
N364P364LcCacTa11B.1.1.700.000341
N364P364LcCacTa11B.1.1420.002899
N364P364LcCacTa11B.1.177.570.000281
N364P364LcCacTa11B.1.177.810.000189
N364P364LcCacTa11B.1.2100.002132
N364P364LcCacTa11B.1.214.20.0006
N364P364LcCacTa11B.1.2320.000537
N364P364LcCacTa11B.1.2340.000132
N364P364LcCacTa11B.1.258.230.02381
N364P364LcCacTa11B.1.2790.000514
N364P364LcCacTa11B.1.3010.005917
N364P364LcCacTa11B.1.351.50.0006
N364P364LcCacTa11B.1.36.80.001
N364P364LcCacTa11B.1.4340.052632
N364P364LcCacTa11B.1.4990.00105
N364P364LcCacTa11B.1.5090.000866
N364P364LcCacTa11B.1.5170.000427
N364P364LcCacTa11B.1.5200.021739
N364P364LcCacTa11B.1.5240.001406
N364P364LcCacTa11B.1.5610.000397
N364P364LcCacTa11B.1.6120.002653
N364P364LcCacTa11B.1.617.30.002985
N364P364LcCacTa11B.1.6270.00202
N364P364LcCacTa11B.1.6370.000073
N364P364LcCacTa11B.1.80.001972
N364P364LcCacTa11B.310.003731
N364P364LcCacTa11B.4.40.018868
N364P364LcCacTa11B.400.000364
N364P364LcCacTa11C.300.001727
N364P364LcCacTa11C.80.004464
N364P364LcCacTa11D.20.000075
N364P364LcCacTa11P.1.120.000484
N364P364LcCacTa11P.1.150.000232

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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