CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : Mut = P207del

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N207P207deldelCCT---14871487128892-28894

Details of the mutation P207del within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N207P207delCCT---14871487All0.000284
N207P207delCCT---283283P.10.004458
N207P207delCCT---171171B.1.1.70.000153
N207P207delCCT---8585D.20.006379
N207P207delCCT---6363B.1.617.20.000237
N207P207delCCT---4949AY.40.000076
N207P207delCCT---4848AY.1030.000298
N207P207delCCT---4747AY.740.005435
N207P207delCCT---4747B.10.00043
N207P207delCCT---3636P.1.120.017425
N207P207delCCT---3535P.1.170.005662
N207P207delCCT---3434B.1.10.000617
N207P207delCCT---3434B.1.1.930.871795
N207P207delCCT---3333AY.250.000198
N207P207delCCT---2828B.1.1.3700.35443
N207P207delCCT---2626AY.1000.001196
N207P207delCCT---2525P.1.140.001195
N207P207delCCT---2424P.1.150.005576
N207P207delCCT---2323Q.20.01411
N207P207delCCT---2222AY.520.017915
N207P207delCCT---2020AY.4.2.10.00298
N207P207delCCT---1818AY.440.00011
N207P207delCCT---1616AY.30.000159
N207P207delCCT---1616AY.430.000071
N207P207delCCT---1515AY.260.000425
N207P207delCCT---1515P.1.10.004765
N207P207delCCT---1212AY.470.000373
N207P207delCCT---1010AY.230.000697
N207P207delCCT---1010B.1.1.5190.000397
N207P207delCCT---1010B.1.2140.03663
N207P207delCCT---99AY.1180.000564
N207P207delCCT---99AY.450.001095
N207P207delCCT---88AY.210.01518
N207P207delCCT---88B.1.2430.000557
N207P207delCCT---88B.1.5260.000188
N207P207delCCT---66AY.1190.000212
N207P207delCCT---66AY.750.000336
N207P207delCCT---66AY.850.002563
N207P207delCCT---66B.1.3490.004289
N207P207delCCT---55AY.270.000324
N207P207delCCT---55B.1.617.10.000645
N207P207delCCT---44AD.20.000876
N207P207delCCT---44AY.290.000063
N207P207delCCT---44AY.390.000099
N207P207delCCT---44AY.4.20.000087
N207P207delCCT---44AY.590.002119
N207P207delCCT---44AY.9.10.000335
N207P207delCCT---44B0.000511
N207P207delCCT---44B.1.1.2220.000816
N207P207delCCT---44B.1.1.2320.00726
N207P207delCCT---44P.1.20.004624
N207P207delCCT---33AY.1020.00008
N207P207delCCT---33AY.200.000117
N207P207delCCT---33AY.300.001187
N207P207delCCT---33AY.330.0002
N207P207delCCT---33AY.360.000445
N207P207delCCT---33AY.4.50.000322
N207P207delCCT---33AY.630.001161
N207P207delCCT---33AY.9.20.00011
N207P207delCCT---33B.1.1.1700.003741
N207P207delCCT---33B.1.1.4340.001046
N207P207delCCT---33B.1.360.000438
N207P207delCCT---33B.1.5760.00272
N207P207delCCT---22AY.1100.000225
N207P207delCCT---22AY.1200.000074
N207P207delCCT---22AY.400.001929
N207P207delCCT---22AY.420.00008
N207P207delCCT---22AY.460.000208
N207P207delCCT---22AY.50.000041
N207P207delCCT---22AY.500.001599
N207P207delCCT---22AY.540.000191
N207P207delCCT---22AY.7.20.001119
N207P207delCCT---22AY.98.10.000097
N207P207delCCT---22AY.99.20.000184
N207P207delCCT---22B.1.1.330.000842
N207P207delCCT---22B.1.20.000018
N207P207delCCT---22B.1.3510.000059
N207P207delCCT---22C.370.000232
N207P207delCCT---22P.1.100.000539
N207P207delCCT---22P.1.70.000639
N207P207delCCT---22P.20.000373
N207P207delCCT---11A.10.000282
N207P207delCCT---11A.23.10.000704
N207P207delCCT---11AY.1130.000142
N207P207delCCT---11AY.1210.000135
N207P207delCCT---11AY.160.00038
N207P207delCCT---11AY.16.10.00047
N207P207delCCT---11AY.240.000431
N207P207delCCT---11AY.29.10.000221
N207P207delCCT---11AY.320.000532
N207P207delCCT---11AY.340.000097
N207P207delCCT---11AY.370.000316
N207P207delCCT---11AY.380.000499
N207P207delCCT---11AY.39.10.00004
N207P207delCCT---11AY.5.40.000277
N207P207delCCT---11AY.570.000656
N207P207delCCT---11AY.60.000041
N207P207delCCT---11AY.610.000105
N207P207delCCT---11AY.790.001211
N207P207delCCT---11AY.980.000079
N207P207delCCT---11B.1.1.2140.000055
N207P207delCCT---11B.1.1.250.000569
N207P207delCCT---11B.1.1.270.00565
N207P207delCCT---11B.1.1.3010.001179
N207P207delCCT---11B.1.1.3030.002762
N207P207delCCT---11B.1.1.3070.002532
N207P207delCCT---11B.1.1.3690.000446
N207P207delCCT---11B.1.1.4130.006897
N207P207delCCT---11B.1.1.500.000679
N207P207delCCT---11B.1.1600.000031
N207P207delCCT---11B.1.1770.000013
N207P207delCCT---11B.1.3240.001605
N207P207delCCT---11B.1.4270.00005
N207P207delCCT---11B.1.4650.003802
N207P207delCCT---11B.1.5250.000113
N207P207delCCT---11B.1.5800.004065
N207P207delCCT---11B.1.5960.000087
N207P207delCCT---11C.37.10.002618
N207P207delCCT---11N.50.001767
N207P207delCCT---11P.1.130.000898
N207P207delCCT---11P.1.160.000374
N207P207delCCT---11P.1.80.004785
N207P207delCCT---11Q.10.000126
N207P207delCCT---11Q.30.000145
N207P207delCCT---11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.