CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : Mut = P207S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N207P207SnonsynCctTct913691330.99967228892-28894
N207P207SnonsynCCTAGC913610.00010945728892-28894
N207P207SnonsynCcTTcA913610.00010945728892-28894
N207P207SnonsynCcTTcC913610.00010945728892-28894

Details of the mutation P207S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N207P207SCctTct91339136All0.001747
N207P207SCCTAGC19136All0
N207P207SCcTTcA19136All0
N207P207SCcTTcC19136All0
N207P207SCctTct39373937AY.1110.721062
N207P207SCctTct13531353B.1.3490.967119
N207P207SCctTct12701270B.1.5770.872852
N207P207SCctTct823823AY.660.880214
N207P207SCctTct561561B.1.5950.146399
N207P207SCctTct488488AY.40.00076
N207P207SCctTct200202B.10.001832
N207P207SCcTTcA1202B.10.000009
N207P207SCcTTcC1202B.10.000009
N207P207SCctTct5455B.1.617.20.000203
N207P207SCCTAGC155B.1.617.20.000004
N207P207SCctTct4242B.1.1.70.000038
N207P207SCctTct4242B.1.20.00037
N207P207SCctTct3232P.20.005972
N207P207SCctTct2727AY.440.000164
N207P207SCctTct2323AY.430.000102
N207P207SCctTct2323B.1.10.000417
N207P207SCctTct2121P.10.000331
N207P207SCctTct1818B.1.5960.001568
N207P207SCctTct1717AY.250.000102
N207P207SCctTct1515B.1.1.280.004669
N207P207SCctTct1010AY.4.50.001075
N207P207SCctTct88AY.1200.000297
N207P207SCctTct77AY.230.000488
N207P207SCctTct77AY.470.000218
N207P207SCctTct66AY.1020.000159
N207P207SCctTct66AY.1030.000037
N207P207SCctTct66AY.30.00006
N207P207SCctTct66B.1.2840.078947
N207P207SCctTct66C.360.005464
N207P207SCctTct55AY.200.000194
N207P207SCctTct55B.1.1.2140.000277
N207P207SCctTct55B.1.1.3690.002231
N207P207SCctTct44AY.1000.000184
N207P207SCctTct44AY.390.000099
N207P207SCctTct44AY.4.20.000087
N207P207SCctTct44AY.50.000083
N207P207SCctTct44AY.980.000316
N207P207SCctTct44B.1.1.2430.016327
N207P207SCctTct44B.1.1.2770.003035
N207P207SCctTct33AY.1170.000254
N207P207SCctTct33AY.98.10.000145
N207P207SCctTct33B.1.1.2220.000612
N207P207SCctTct33B.1.1.3680.009259
N207P207SCctTct33B.1.4290.000071
N207P207SCctTct33B.1.5810.028302
N207P207SCctTct22AY.260.000057
N207P207SCctTct22AY.7.10.000225
N207P207SCctTct22AY.99.20.000184
N207P207SCctTct22B.1.1.3180.000604
N207P207SCctTct22B.1.1.700.000682
N207P207SCctTct22B.1.3960.001411
N207P207SCctTct22P.1.160.000748
N207P207SCctTct22P.1.170.000324
N207P207SCctTct11AY.1050.000643
N207P207SCctTct11AY.110.001339
N207P207SCctTct11AY.1180.000063
N207P207SCctTct11AY.120.000316
N207P207SCctTct11AY.140.000088
N207P207SCctTct11AY.320.000532
N207P207SCctTct11AY.330.000067
N207P207SCctTct11AY.39.10.00004
N207P207SCctTct11AY.4.2.10.000149
N207P207SCctTct11AY.4.30.000842
N207P207SCctTct11AY.420.00004
N207P207SCctTct11AY.450.000122
N207P207SCctTct11AY.570.000656
N207P207SCctTct11AY.580.000907
N207P207SCctTct11AY.60.000041
N207P207SCctTct11AY.610.000105
N207P207SCctTct11AY.700.000209
N207P207SCctTct11AY.740.000116
N207P207SCctTct11AY.75.10.00018
N207P207SCctTct11AY.90.000068
N207P207SCctTct11AY.9.20.000037
N207P207SCctTct11B.1.1.1810.004545
N207P207SCctTct11B.1.1.1980.001468
N207P207SCctTct11B.1.1.2370.005405
N207P207SCctTct11B.1.1.250.000569
N207P207SCctTct11B.1.1.4340.000349
N207P207SCctTct11B.1.1.500.000679
N207P207SCctTct11B.1.177.730.000566
N207P207SCctTct11B.1.2340.000132
N207P207SCctTct11B.1.2580.000067
N207P207SCctTct11B.1.3300.028571
N207P207SCctTct11B.1.3360.002439
N207P207SCctTct11B.1.3670.000792
N207P207SCctTct11B.1.4170.028571
N207P207SCctTct11B.1.438.10.000107
N207P207SCctTct11B.1.4970.000315
N207P207SCctTct11B.1.5260.000024
N207P207SCctTct11B.1.5670.003333
N207P207SCctTct11B.1.5690.014493
N207P207SCctTct11B.1.5750.000303
N207P207SCctTct11B.1.5760.000907
N207P207SCctTct11B.1.5800.004065
N207P207SCctTct11D.20.000075
N207P207SCctTct11P.1.110.010204
N207P207SCctTct11P.1.120.000484
N207P207SCctTct11P.1.140.000048
N207P207SCctTct11P.1.150.000232
N207P207SCctTct11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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