CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
N | 207 | P207S | nonsyn | Cct | Tct | 9136 | 9133 | 0.999672 | 28892-28894 | |
N | 207 | P207S | nonsyn | CCT | AGC | 9136 | 1 | 0.000109457 | 28892-28894 | |
N | 207 | P207S | nonsyn | CcT | TcA | 9136 | 1 | 0.000109457 | 28892-28894 | |
N | 207 | P207S | nonsyn | CcT | TcC | 9136 | 1 | 0.000109457 | 28892-28894 |
Details of the mutation P207S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
N | 207 | P207S | Cct | Tct | 9133 | 9136 | All | 0.001747 |
N | 207 | P207S | CCT | AGC | 1 | 9136 | All | 0 |
N | 207 | P207S | CcT | TcA | 1 | 9136 | All | 0 |
N | 207 | P207S | CcT | TcC | 1 | 9136 | All | 0 |
N | 207 | P207S | Cct | Tct | 3937 | 3937 | AY.111 | 0.721062 |
N | 207 | P207S | Cct | Tct | 1353 | 1353 | B.1.349 | 0.967119 |
N | 207 | P207S | Cct | Tct | 1270 | 1270 | B.1.577 | 0.872852 |
N | 207 | P207S | Cct | Tct | 823 | 823 | AY.66 | 0.880214 |
N | 207 | P207S | Cct | Tct | 561 | 561 | B.1.595 | 0.146399 |
N | 207 | P207S | Cct | Tct | 488 | 488 | AY.4 | 0.00076 |
N | 207 | P207S | Cct | Tct | 200 | 202 | B.1 | 0.001832 |
N | 207 | P207S | CcT | TcA | 1 | 202 | B.1 | 0.000009 |
N | 207 | P207S | CcT | TcC | 1 | 202 | B.1 | 0.000009 |
N | 207 | P207S | Cct | Tct | 54 | 55 | B.1.617.2 | 0.000203 |
N | 207 | P207S | CCT | AGC | 1 | 55 | B.1.617.2 | 0.000004 |
N | 207 | P207S | Cct | Tct | 42 | 42 | B.1.1.7 | 0.000038 |
N | 207 | P207S | Cct | Tct | 42 | 42 | B.1.2 | 0.00037 |
N | 207 | P207S | Cct | Tct | 32 | 32 | P.2 | 0.005972 |
N | 207 | P207S | Cct | Tct | 27 | 27 | AY.44 | 0.000164 |
N | 207 | P207S | Cct | Tct | 23 | 23 | AY.43 | 0.000102 |
N | 207 | P207S | Cct | Tct | 23 | 23 | B.1.1 | 0.000417 |
N | 207 | P207S | Cct | Tct | 21 | 21 | P.1 | 0.000331 |
N | 207 | P207S | Cct | Tct | 18 | 18 | B.1.596 | 0.001568 |
N | 207 | P207S | Cct | Tct | 17 | 17 | AY.25 | 0.000102 |
N | 207 | P207S | Cct | Tct | 15 | 15 | B.1.1.28 | 0.004669 |
N | 207 | P207S | Cct | Tct | 10 | 10 | AY.4.5 | 0.001075 |
N | 207 | P207S | Cct | Tct | 8 | 8 | AY.120 | 0.000297 |
N | 207 | P207S | Cct | Tct | 7 | 7 | AY.23 | 0.000488 |
N | 207 | P207S | Cct | Tct | 7 | 7 | AY.47 | 0.000218 |
N | 207 | P207S | Cct | Tct | 6 | 6 | AY.102 | 0.000159 |
N | 207 | P207S | Cct | Tct | 6 | 6 | AY.103 | 0.000037 |
N | 207 | P207S | Cct | Tct | 6 | 6 | AY.3 | 0.00006 |
N | 207 | P207S | Cct | Tct | 6 | 6 | B.1.284 | 0.078947 |
N | 207 | P207S | Cct | Tct | 6 | 6 | C.36 | 0.005464 |
N | 207 | P207S | Cct | Tct | 5 | 5 | AY.20 | 0.000194 |
N | 207 | P207S | Cct | Tct | 5 | 5 | B.1.1.214 | 0.000277 |
N | 207 | P207S | Cct | Tct | 5 | 5 | B.1.1.369 | 0.002231 |
N | 207 | P207S | Cct | Tct | 4 | 4 | AY.100 | 0.000184 |
N | 207 | P207S | Cct | Tct | 4 | 4 | AY.39 | 0.000099 |
N | 207 | P207S | Cct | Tct | 4 | 4 | AY.4.2 | 0.000087 |
N | 207 | P207S | Cct | Tct | 4 | 4 | AY.5 | 0.000083 |
N | 207 | P207S | Cct | Tct | 4 | 4 | AY.98 | 0.000316 |
N | 207 | P207S | Cct | Tct | 4 | 4 | B.1.1.243 | 0.016327 |
N | 207 | P207S | Cct | Tct | 4 | 4 | B.1.1.277 | 0.003035 |
N | 207 | P207S | Cct | Tct | 3 | 3 | AY.117 | 0.000254 |
N | 207 | P207S | Cct | Tct | 3 | 3 | AY.98.1 | 0.000145 |
N | 207 | P207S | Cct | Tct | 3 | 3 | B.1.1.222 | 0.000612 |
N | 207 | P207S | Cct | Tct | 3 | 3 | B.1.1.368 | 0.009259 |
N | 207 | P207S | Cct | Tct | 3 | 3 | B.1.429 | 0.000071 |
N | 207 | P207S | Cct | Tct | 3 | 3 | B.1.581 | 0.028302 |
N | 207 | P207S | Cct | Tct | 2 | 2 | AY.26 | 0.000057 |
N | 207 | P207S | Cct | Tct | 2 | 2 | AY.7.1 | 0.000225 |
N | 207 | P207S | Cct | Tct | 2 | 2 | AY.99.2 | 0.000184 |
N | 207 | P207S | Cct | Tct | 2 | 2 | B.1.1.318 | 0.000604 |
N | 207 | P207S | Cct | Tct | 2 | 2 | B.1.1.70 | 0.000682 |
N | 207 | P207S | Cct | Tct | 2 | 2 | B.1.396 | 0.001411 |
N | 207 | P207S | Cct | Tct | 2 | 2 | P.1.16 | 0.000748 |
N | 207 | P207S | Cct | Tct | 2 | 2 | P.1.17 | 0.000324 |
N | 207 | P207S | Cct | Tct | 1 | 1 | AY.105 | 0.000643 |
N | 207 | P207S | Cct | Tct | 1 | 1 | AY.11 | 0.001339 |
N | 207 | P207S | Cct | Tct | 1 | 1 | AY.118 | 0.000063 |
N | 207 | P207S | Cct | Tct | 1 | 1 | AY.12 | 0.000316 |
N | 207 | P207S | Cct | Tct | 1 | 1 | AY.14 | 0.000088 |
N | 207 | P207S | Cct | Tct | 1 | 1 | AY.32 | 0.000532 |
N | 207 | P207S | Cct | Tct | 1 | 1 | AY.33 | 0.000067 |
N | 207 | P207S | Cct | Tct | 1 | 1 | AY.39.1 | 0.00004 |
N | 207 | P207S | Cct | Tct | 1 | 1 | AY.4.2.1 | 0.000149 |
N | 207 | P207S | Cct | Tct | 1 | 1 | AY.4.3 | 0.000842 |
N | 207 | P207S | Cct | Tct | 1 | 1 | AY.42 | 0.00004 |
N | 207 | P207S | Cct | Tct | 1 | 1 | AY.45 | 0.000122 |
N | 207 | P207S | Cct | Tct | 1 | 1 | AY.57 | 0.000656 |
N | 207 | P207S | Cct | Tct | 1 | 1 | AY.58 | 0.000907 |
N | 207 | P207S | Cct | Tct | 1 | 1 | AY.6 | 0.000041 |
N | 207 | P207S | Cct | Tct | 1 | 1 | AY.61 | 0.000105 |
N | 207 | P207S | Cct | Tct | 1 | 1 | AY.70 | 0.000209 |
N | 207 | P207S | Cct | Tct | 1 | 1 | AY.74 | 0.000116 |
N | 207 | P207S | Cct | Tct | 1 | 1 | AY.75.1 | 0.00018 |
N | 207 | P207S | Cct | Tct | 1 | 1 | AY.9 | 0.000068 |
N | 207 | P207S | Cct | Tct | 1 | 1 | AY.9.2 | 0.000037 |
N | 207 | P207S | Cct | Tct | 1 | 1 | B.1.1.181 | 0.004545 |
N | 207 | P207S | Cct | Tct | 1 | 1 | B.1.1.198 | 0.001468 |
N | 207 | P207S | Cct | Tct | 1 | 1 | B.1.1.237 | 0.005405 |
N | 207 | P207S | Cct | Tct | 1 | 1 | B.1.1.25 | 0.000569 |
N | 207 | P207S | Cct | Tct | 1 | 1 | B.1.1.434 | 0.000349 |
N | 207 | P207S | Cct | Tct | 1 | 1 | B.1.1.50 | 0.000679 |
N | 207 | P207S | Cct | Tct | 1 | 1 | B.1.177.73 | 0.000566 |
N | 207 | P207S | Cct | Tct | 1 | 1 | B.1.234 | 0.000132 |
N | 207 | P207S | Cct | Tct | 1 | 1 | B.1.258 | 0.000067 |
N | 207 | P207S | Cct | Tct | 1 | 1 | B.1.330 | 0.028571 |
N | 207 | P207S | Cct | Tct | 1 | 1 | B.1.336 | 0.002439 |
N | 207 | P207S | Cct | Tct | 1 | 1 | B.1.367 | 0.000792 |
N | 207 | P207S | Cct | Tct | 1 | 1 | B.1.417 | 0.028571 |
N | 207 | P207S | Cct | Tct | 1 | 1 | B.1.438.1 | 0.000107 |
N | 207 | P207S | Cct | Tct | 1 | 1 | B.1.497 | 0.000315 |
N | 207 | P207S | Cct | Tct | 1 | 1 | B.1.526 | 0.000024 |
N | 207 | P207S | Cct | Tct | 1 | 1 | B.1.567 | 0.003333 |
N | 207 | P207S | Cct | Tct | 1 | 1 | B.1.569 | 0.014493 |
N | 207 | P207S | Cct | Tct | 1 | 1 | B.1.575 | 0.000303 |
N | 207 | P207S | Cct | Tct | 1 | 1 | B.1.576 | 0.000907 |
N | 207 | P207S | Cct | Tct | 1 | 1 | B.1.580 | 0.004065 |
N | 207 | P207S | Cct | Tct | 1 | 1 | D.2 | 0.000075 |
N | 207 | P207S | Cct | Tct | 1 | 1 | P.1.11 | 0.010204 |
N | 207 | P207S | Cct | Tct | 1 | 1 | P.1.12 | 0.000484 |
N | 207 | P207S | Cct | Tct | 1 | 1 | P.1.14 | 0.000048 |
N | 207 | P207S | Cct | Tct | 1 | 1 | P.1.15 | 0.000232 |
N | 207 | P207S | Cct | Tct | 1 | 1 | R.1 | 0.00009 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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