CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
N | 199 | P199L | nonsyn | cCa | cTa | 170868 | 170770 | 0.999426 | 28868-28870 | |
N | 199 | P199L | nonsyn | CCa | TTa | 170868 | 66 | 0.000386263 | 28868-28870 | |
N | 199 | P199L | nonsyn | cCA | cTG | 170868 | 25 | 0.000146312 | 28868-28870 | |
N | 199 | P199L | nonsyn | cCA | cTC | 170868 | 4 | 0.0000234099 | 28868-28870 | |
N | 199 | P199L | nonsyn | cCA | cTT | 170868 | 3 | 0.0000175574 | 28868-28870 |
Details of the mutation P199L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
N | 199 | P199L | cCa | cTa | 170770 | 170868 | All | 0.032662 |
N | 199 | P199L | CCa | TTa | 66 | 170868 | All | 0.000013 |
N | 199 | P199L | cCA | cTG | 25 | 170868 | All | 0.000005 |
N | 199 | P199L | cCA | cTC | 4 | 170868 | All | 0.000001 |
N | 199 | P199L | cCA | cTT | 3 | 170868 | All | 0.000001 |
N | 199 | P199L | cCa | cTa | 110854 | 110907 | B.1.2 | 0.976111 |
N | 199 | P199L | CCa | TTa | 51 | 110907 | B.1.2 | 0.000449 |
N | 199 | P199L | cCA | cTT | 1 | 110907 | B.1.2 | 0.000009 |
N | 199 | P199L | cCA | cTC | 1 | 110907 | B.1.2 | 0.000009 |
N | 199 | P199L | cCa | cTa | 28880 | 28882 | B.1.526 | 0.678811 |
N | 199 | P199L | CCa | TTa | 2 | 28882 | B.1.526 | 0.000047 |
N | 199 | P199L | cCa | cTa | 13615 | 13646 | B.1.221 | 0.967112 |
N | 199 | P199L | cCA | cTG | 22 | 13646 | B.1.221 | 0.001563 |
N | 199 | P199L | CCa | TTa | 7 | 13646 | B.1.221 | 0.000497 |
N | 199 | P199L | cCA | cTT | 1 | 13646 | B.1.221 | 0.000071 |
N | 199 | P199L | cCA | cTC | 1 | 13646 | B.1.221 | 0.000071 |
N | 199 | P199L | cCa | cTa | 10884 | 10887 | B.1.596 | 0.948414 |
N | 199 | P199L | CCa | TTa | 3 | 10887 | B.1.596 | 0.000261 |
N | 199 | P199L | cCa | cTa | 2748 | 2752 | B.1 | 0.02517 |
N | 199 | P199L | cCA | cTG | 3 | 2752 | B.1 | 0.000027 |
N | 199 | P199L | CCa | TTa | 1 | 2752 | B.1 | 0.000009 |
N | 199 | P199L | cCa | cTa | 1189 | 1189 | B.1.221.3 | 0.990833 |
N | 199 | P199L | cCa | cTa | 343 | 343 | B.1.221.1 | 0.997093 |
N | 199 | P199L | cCa | cTa | 246 | 246 | B.1.221.2 | 0.987952 |
N | 199 | P199L | cCa | cTa | 237 | 237 | B.1.221.4 | 0.9875 |
N | 199 | P199L | cCa | cTa | 96 | 96 | B.1.595 | 0.025052 |
N | 199 | P199L | cCa | cTa | 85 | 85 | B.1.617.2 | 0.00032 |
N | 199 | P199L | cCa | cTa | 82 | 82 | B.1.429 | 0.001929 |
N | 199 | P199L | cCa | cTa | 80 | 80 | B.1.177.73 | 0.0453 |
N | 199 | P199L | cCa | cTa | 79 | 79 | AY.25 | 0.000475 |
N | 199 | P199L | cCa | cTa | 68 | 68 | B.1.1.7 | 0.000061 |
N | 199 | P199L | cCa | cTa | 62 | 62 | B.1.382 | 0.553571 |
N | 199 | P199L | cCa | cTa | 59 | 59 | B.1.563 | 1 |
N | 199 | P199L | cCa | cTa | 52 | 52 | B.1.1 | 0.000943 |
N | 199 | P199L | cCa | cTa | 52 | 52 | B.60 | 0.825397 |
N | 199 | P199L | cCa | cTa | 45 | 45 | B.1.177 | 0.000593 |
N | 199 | P199L | cCa | cTa | 43 | 43 | AY.43 | 0.000191 |
N | 199 | P199L | cCa | cTa | 42 | 42 | AY.4 | 0.000065 |
N | 199 | P199L | cCa | cTa | 34 | 34 | AY.61 | 0.003562 |
N | 199 | P199L | cCa | cTa | 34 | 34 | B | 0.004346 |
N | 199 | P199L | cCa | cTa | 33 | 33 | B.1.1.524 | 0.6875 |
N | 199 | P199L | cCa | cTa | 29 | 29 | AY.75.1 | 0.005229 |
N | 199 | P199L | cCa | cTa | 27 | 27 | B.1.234 | 0.003562 |
N | 199 | P199L | cCa | cTa | 22 | 22 | B.1.1.335 | 0.285714 |
N | 199 | P199L | cCa | cTa | 22 | 22 | P.1 | 0.000347 |
N | 199 | P199L | cCa | cTa | 21 | 21 | AY.44 | 0.000128 |
N | 199 | P199L | cCa | cTa | 20 | 20 | AY.29 | 0.000315 |
N | 199 | P199L | cCa | cTa | 18 | 18 | B.1.348 | 0.327273 |
N | 199 | P199L | cCa | cTa | 18 | 18 | B.1.580 | 0.073171 |
N | 199 | P199L | cCa | cTa | 18 | 18 | B.1.623 | 0.009657 |
N | 199 | P199L | cCa | cTa | 17 | 17 | B.1.576 | 0.015413 |
N | 199 | P199L | cCa | cTa | 16 | 16 | B.1.375 | 0.013115 |
N | 199 | P199L | cCa | cTa | 15 | 15 | B.1.1.519 | 0.000596 |
N | 199 | P199L | cCa | cTa | 15 | 15 | B.1.311 | 0.004119 |
N | 199 | P199L | cCa | cTa | 15 | 15 | B.1.564 | 0.006388 |
N | 199 | P199L | cCa | cTa | 14 | 14 | AY.103 | 0.000087 |
N | 199 | P199L | cCa | cTa | 14 | 14 | B.1.210 | 0.029851 |
N | 199 | P199L | cCa | cTa | 13 | 13 | B.1.361 | 0.016753 |
N | 199 | P199L | cCa | cTa | 13 | 13 | B.1.427 | 0.000656 |
N | 199 | P199L | cCa | cTa | 12 | 12 | B.1.1.214 | 0.000665 |
N | 199 | P199L | cCa | cTa | 10 | 10 | AY.3 | 0.000099 |
N | 199 | P199L | cCa | cTa | 10 | 10 | B.1.612 | 0.026525 |
N | 199 | P199L | cCa | cTa | 9 | 9 | AY.3.1 | 0.000767 |
N | 199 | P199L | cCa | cTa | 9 | 9 | B.1.160 | 0.000281 |
N | 199 | P199L | cCa | cTa | 9 | 9 | B.1.243 | 0.000626 |
N | 199 | P199L | cCa | cTa | 9 | 9 | B.1.561 | 0.003573 |
N | 199 | P199L | cCa | cTa | 7 | 9 | B.1.567 | 0.023333 |
N | 199 | P199L | CCa | TTa | 2 | 9 | B.1.567 | 0.006667 |
N | 199 | P199L | cCa | cTa | 8 | 8 | AY.5 | 0.000165 |
N | 199 | P199L | cCa | cTa | 8 | 8 | B.1.396 | 0.005646 |
N | 199 | P199L | cCa | cTa | 8 | 8 | B.1.621 | 0.000708 |
N | 199 | P199L | cCa | cTa | 8 | 8 | B.1.625 | 0.018824 |
N | 199 | P199L | cCa | cTa | 8 | 8 | B.1.78 | 0.068376 |
N | 199 | P199L | cCa | cTa | 7 | 7 | AY.23 | 0.000488 |
N | 199 | P199L | cCa | cTa | 7 | 7 | B.1.160.32 | 0.030043 |
N | 199 | P199L | cCa | cTa | 7 | 7 | B.1.177.43 | 0.01034 |
N | 199 | P199L | cCa | cTa | 7 | 7 | B.1.206 | 0.00571 |
N | 199 | P199L | cCa | cTa | 7 | 7 | B.1.36.1 | 0.007982 |
N | 199 | P199L | cCa | cTa | 7 | 7 | B.1.577 | 0.004811 |
N | 199 | P199L | cCa | cTa | 7 | 7 | B.1.628 | 0.002467 |
N | 199 | P199L | cCa | cTa | 7 | 7 | B.1.637 | 0.000512 |
N | 199 | P199L | cCa | cTa | 3 | 6 | 0.166667 | |
N | 199 | P199L | cCA | cTC | 2 | 6 | 0.111111 | |
N | 199 | P199L | cCA | cTT | 1 | 6 | 0.055556 | |
N | 199 | P199L | cCa | cTa | 6 | 6 | B.1.1.412 | 0.045802 |
N | 199 | P199L | cCa | cTa | 6 | 6 | B.1.369 | 0.001711 |
N | 199 | P199L | cCa | cTa | 6 | 6 | P.1.12 | 0.002904 |
N | 199 | P199L | cCa | cTa | 5 | 5 | AY.13 | 0.000805 |
N | 199 | P199L | cCa | cTa | 5 | 5 | AY.39 | 0.000124 |
N | 199 | P199L | cCa | cTa | 5 | 5 | AY.75 | 0.00028 |
N | 199 | P199L | cCa | cTa | 5 | 5 | B.1.1.279 | 0.005605 |
N | 199 | P199L | cCa | cTa | 5 | 5 | B.1.240 | 0.001078 |
N | 199 | P199L | cCa | cTa | 5 | 5 | B.1.367 | 0.003962 |
N | 199 | P199L | cCa | cTa | 5 | 5 | B.1.400 | 0.002145 |
N | 199 | P199L | cCa | cTa | 5 | 5 | B.1.462 | 0.036232 |
N | 199 | P199L | cCa | cTa | 5 | 5 | B.1.476 | 0.5 |
N | 199 | P199L | cCa | cTa | 5 | 5 | B.1.606 | 0.03012 |
N | 199 | P199L | cCa | cTa | 5 | 5 | B.1.609 | 0.002397 |
N | 199 | P199L | cCa | cTa | 5 | 5 | Q.1 | 0.000632 |
N | 199 | P199L | cCa | cTa | 4 | 4 | AY.26 | 0.000113 |
N | 199 | P199L | cCa | cTa | 4 | 4 | AY.54 | 0.000381 |
N | 199 | P199L | cCa | cTa | 4 | 4 | AY.92 | 0.001149 |
N | 199 | P199L | cCa | cTa | 4 | 4 | AY.95 | 0.003044 |
N | 199 | P199L | cCa | cTa | 4 | 4 | B.1.157 | 0.01194 |
N | 199 | P199L | cCa | cTa | 4 | 4 | B.1.177.40 | 0.020619 |
N | 199 | P199L | cCa | cTa | 4 | 4 | B.1.177.7 | 0.000659 |
N | 199 | P199L | cCa | cTa | 4 | 4 | B.1.258 | 0.000266 |
N | 199 | P199L | cCa | cTa | 4 | 4 | B.1.258.17 | 0.000416 |
N | 199 | P199L | cCa | cTa | 4 | 4 | B.1.330 | 0.114286 |
N | 199 | P199L | cCa | cTa | 4 | 4 | B.1.349 | 0.002859 |
N | 199 | P199L | cCa | cTa | 4 | 4 | B.1.351 | 0.000119 |
N | 199 | P199L | cCa | cTa | 4 | 4 | B.1.575 | 0.001214 |
N | 199 | P199L | cCa | cTa | 4 | 4 | B.1.590 | 0.018182 |
N | 199 | P199L | cCa | cTa | 4 | 4 | B.40 | 0.001457 |
N | 199 | P199L | cCa | cTa | 3 | 3 | B.1.1.434 | 0.001046 |
N | 199 | P199L | cCa | cTa | 3 | 3 | B.1.1.526 | 0.010638 |
N | 199 | P199L | cCa | cTa | 3 | 3 | B.1.139 | 0.002199 |
N | 199 | P199L | cCa | cTa | 3 | 3 | B.1.284 | 0.039474 |
N | 199 | P199L | cCa | cTa | 3 | 3 | B.1.336 | 0.007317 |
N | 199 | P199L | cCa | cTa | 3 | 3 | B.1.530 | 0.021429 |
N | 199 | P199L | cCa | cTa | 3 | 3 | B.1.565 | 0.002431 |
N | 199 | P199L | cCa | cTa | 3 | 3 | B.1.574 | 0.006452 |
N | 199 | P199L | cCa | cTa | 3 | 3 | B.1.88.1 | 0.014423 |
N | 199 | P199L | cCa | cTa | 3 | 3 | P.3 | 0.004785 |
N | 199 | P199L | cCa | cTa | 2 | 2 | AD.1 | 0.00823 |
N | 199 | P199L | cCa | cTa | 2 | 2 | AE.8 | 0.000978 |
N | 199 | P199L | cCa | cTa | 2 | 2 | AU.1 | 0.002532 |
N | 199 | P199L | cCa | cTa | 2 | 2 | AY.120 | 0.000074 |
N | 199 | P199L | cCa | cTa | 2 | 2 | AY.4.5 | 0.000215 |
N | 199 | P199L | cCa | cTa | 2 | 2 | AY.45 | 0.000243 |
N | 199 | P199L | cCa | cTa | 2 | 2 | AY.47 | 0.000062 |
N | 199 | P199L | cCa | cTa | 2 | 2 | AY.65 | 0.001066 |
N | 199 | P199L | cCa | cTa | 2 | 2 | AY.96 | 0.004149 |
N | 199 | P199L | cCa | cTa | 2 | 2 | B.1.1.192 | 0.004619 |
N | 199 | P199L | cCa | cTa | 2 | 2 | B.1.1.210 | 0.011429 |
N | 199 | P199L | cCa | cTa | 2 | 2 | B.1.1.486 | 0.003155 |
N | 199 | P199L | cCa | cTa | 2 | 2 | B.1.126 | 0.002551 |
N | 199 | P199L | cCa | cTa | 2 | 2 | B.1.177.12 | 0.000303 |
N | 199 | P199L | cCa | cTa | 2 | 2 | B.1.177.44 | 0.001038 |
N | 199 | P199L | cCa | cTa | 2 | 2 | B.1.264 | 0.024691 |
N | 199 | P199L | cCa | cTa | 2 | 2 | B.1.36.18 | 0.00084 |
N | 199 | P199L | cCa | cTa | 2 | 2 | B.1.362 | 0.003082 |
N | 199 | P199L | cCa | cTa | 2 | 2 | B.1.404 | 0.002604 |
N | 199 | P199L | cCa | cTa | 2 | 2 | B.1.413 | 0.008511 |
N | 199 | P199L | cCa | cTa | 2 | 2 | B.1.517 | 0.000854 |
N | 199 | P199L | cCa | cTa | 2 | 2 | B.1.546 | 0.007407 |
N | 199 | P199L | cCa | cTa | 2 | 2 | B.1.566 | 0.038462 |
N | 199 | P199L | cCa | cTa | 2 | 2 | B.1.589 | 0.015152 |
N | 199 | P199L | cCa | cTa | 2 | 2 | B.61 | 0.011494 |
N | 199 | P199L | cCa | cTa | 2 | 2 | D.2 | 0.00015 |
N | 199 | P199L | cCa | cTa | 1 | 1 | A | 0.000387 |
N | 199 | P199L | cCa | cTa | 1 | 1 | A.2.5.2 | 0.001572 |
N | 199 | P199L | cCa | cTa | 1 | 1 | AY.1 | 0.000396 |
N | 199 | P199L | cCa | cTa | 1 | 1 | AY.10 | 0.00053 |
N | 199 | P199L | cCa | cTa | 1 | 1 | AY.102 | 0.000027 |
N | 199 | P199L | cCa | cTa | 1 | 1 | AY.113 | 0.000142 |
N | 199 | P199L | cCa | cTa | 1 | 1 | AY.114 | 0.000231 |
N | 199 | P199L | cCa | cTa | 1 | 1 | AY.116 | 0.000287 |
N | 199 | P199L | cCa | cTa | 1 | 1 | AY.118 | 0.000063 |
N | 199 | P199L | cCa | cTa | 1 | 1 | AY.119 | 0.000035 |
N | 199 | P199L | cCa | cTa | 1 | 1 | AY.12 | 0.000316 |
N | 199 | P199L | cCa | cTa | 1 | 1 | AY.121 | 0.000135 |
N | 199 | P199L | cCa | cTa | 1 | 1 | AY.20 | 0.000039 |
N | 199 | P199L | cCa | cTa | 1 | 1 | AY.29.1 | 0.000221 |
N | 199 | P199L | cCa | cTa | 1 | 1 | AY.33 | 0.000067 |
N | 199 | P199L | cCa | cTa | 1 | 1 | AY.34 | 0.000097 |
N | 199 | P199L | cCa | cTa | 1 | 1 | AY.39.1 | 0.00004 |
N | 199 | P199L | cCa | cTa | 1 | 1 | AY.4.2 | 0.000022 |
N | 199 | P199L | cCa | cTa | 1 | 1 | AY.4.2.1 | 0.000149 |
N | 199 | P199L | cCa | cTa | 1 | 1 | AY.42 | 0.00004 |
N | 199 | P199L | cCa | cTa | 1 | 1 | AY.52 | 0.000814 |
N | 199 | P199L | cCa | cTa | 1 | 1 | AY.6 | 0.000041 |
N | 199 | P199L | cCa | cTa | 1 | 1 | AY.62 | 0.000436 |
N | 199 | P199L | cCa | cTa | 1 | 1 | AY.7 | 0.000196 |
N | 199 | P199L | cCa | cTa | 1 | 1 | AY.71 | 0.000475 |
N | 199 | P199L | cCa | cTa | 1 | 1 | AY.9.1 | 0.000084 |
N | 199 | P199L | cCa | cTa | 1 | 1 | AY.9.2 | 0.000037 |
N | 199 | P199L | cCa | cTa | 1 | 1 | AY.93 | 0.000273 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.1.28 | 0.000311 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.1.356 | 0.008547 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.1.372 | 0.000689 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.1.397 | 0.002252 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.1.466 | 0.008696 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.1.507 | 0.008696 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.1.528 | 0.004808 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.1.53 | 0.013699 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.1.70 | 0.000341 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.104 | 0.00369 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.110.3 | 0.000718 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.111 | 0.001175 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.115 | 0.021739 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.128 | 0.000635 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.177.31 | 0.011494 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.177.4 | 0.000211 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.177.86 | 0.000183 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.179 | 0.003759 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.194 | 0.04 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.223 | 0.002778 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.232 | 0.000537 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.243.1 | 0.022222 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.265 | 0.001271 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.3 | 0.002618 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.305 | 0.002151 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.325 | 0.006897 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.340 | 0.004292 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.355 | 0.011111 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.36.27 | 0.000763 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.36.39 | 0.002217 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.370 | 0.008 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.371 | 0.001122 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.378 | 0.006849 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.385 | 0.010638 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.390 | 0.010638 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.391 | 0.001127 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.395 | 0.007042 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.400.1 | 0.015152 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.417 | 0.028571 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.423 | 0.010204 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.433 | 0.003195 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.443 | 0.004673 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.453 | 0.003236 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.474 | 0.001901 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.478 | 0.011765 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.501 | 0.007353 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.521 | 0.004975 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.525 | 0.000113 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.527 | 0.003704 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.550 | 0.013699 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.568 | 0.001111 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.569 | 0.014493 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.581 | 0.009434 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.582 | 0.000491 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.585 | 0.027778 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.586 | 0.010989 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.593 | 0.01087 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.595.2 | 0.04 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.600 | 0.005848 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.605 | 0.005952 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.610 | 0.003546 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.611 | 0.04 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.617.1 | 0.000129 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.619 | 0.000871 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.67 | 0.043478 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.70 | 0.02439 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.8 | 0.001972 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.81 | 0.021277 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.9.5 | 0.005682 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.94 | 0.027027 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.29 | 0.003509 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.55 | 0.00295 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.6 | 0.00091 |
N | 199 | P199L | cCa | cTa | 1 | 1 | C.18 | 0.002591 |
N | 199 | P199L | cCa | cTa | 1 | 1 | M.1 | 0.023256 |
N | 199 | P199L | cCa | cTa | 1 | 1 | P.1.1 | 0.000318 |
N | 199 | P199L | cCa | cTa | 1 | 1 | P.1.16 | 0.000374 |
N | 199 | P199L | cCa | cTa | 1 | 1 | P.2 | 0.000187 |
N | 199 | P199L | cCa | cTa | 1 | 1 | Q.4 | 0.000455 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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