CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : Mut = P162S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N162P162SnonsynCctTct11368890.7825728757-28759
N162P162SnonsynCcTTcC11361210.10651428757-28759
N162P162SnonsynCcTTcA1136960.08450728757-28759
N162P162SnonsynCcTTcG1136210.018485928757-28759
N162P162SnonsynCCtAGt113650.0044014128757-28759
N162P162SnonsynCCTAGC113640.0035211328757-28759

Details of the mutation P162S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N162P162SCctTct8891136All0.00017
N162P162SCcTTcC1211136All0.000023
N162P162SCcTTcA961136All0.000018
N162P162SCcTTcG211136All0.000004
N162P162SCCtAGt51136All0.000001
N162P162SCCTAGC41136All0.000001
N162P162SCctTct236238B.1.1.70.000211
N162P162SCCtAGt1238B.1.1.70.000001
N162P162SCcTTcA1238B.1.1.70.000001
N162P162SCctTct106215B.10.000971
N162P162SCcTTcC55215B.10.000504
N162P162SCcTTcA37215B.10.000339
N162P162SCcTTcG13215B.10.000119
N162P162SCCtAGt2215B.10.000018
N162P162SCCTAGC2215B.10.000018
N162P162SCctTct6293B.1.1770.000816
N162P162SCcTTcC1593B.1.1770.000198
N162P162SCcTTcA1393B.1.1770.000171
N162P162SCcTTcG193B.1.1770.000013
N162P162SCCTAGC193B.1.1770.000013
N162P162SCCtAGt193B.1.1770.000013
N162P162SCctTct3961B.1.10.000707
N162P162SCcTTcC1061B.1.10.000181
N162P162SCcTTcA961B.1.10.000163
N162P162SCcTTcG361B.1.10.000054
N162P162SCctTct5454AY.40.000084
N162P162SCctTct3737AY.440.000225
N162P162SCctTct2424B.1.4290.000565
N162P162SCctTct2323AY.46.60.001661
N162P162SCctTct1723B.1.20.00015
N162P162SCcTTcA423B.1.20.000035
N162P162SCcTTcC223B.1.20.000018
N162P162SCctTct2020B.1.617.20.000075
N162P162SCctTct1019B.1.1600.000312
N162P162SCcTTcA419B.1.1600.000125
N162P162SCcTTcC319B.1.1600.000094
N162P162SCcTTcG219B.1.1600.000062
N162P162SCctTct1119B.1.177.440.005708
N162P162SCcTTcC619B.1.177.440.003114
N162P162SCcTTcA219B.1.177.440.001038
N162P162SCctTct918B.1.2580.000599
N162P162SCcTTcC518B.1.2580.000333
N162P162SCcTTcA418B.1.2580.000266
N162P162SCctTct1017B.1.1.390.005097
N162P162SCcTTcC417B.1.1.390.002039
N162P162SCcTTcA217B.1.1.390.001019
N162P162SCcTTcG117B.1.1.390.00051
N162P162SCctTct1515AY.1030.000093
N162P162SCctTct1313AY.39.10.000515
N162P162SCctTct1111AY.140.000968
N162P162SCctTct1111B.1.5750.003337
N162P162SCctTct1010AY.30.000099
N162P162SCctTct710B.1.2210.000497
N162P162SCcTTcA210B.1.2210.000142
N162P162SCcTTcC110B.1.2210.000071
N162P162SCctTct99AY.1170.000761
N162P162SCctTct59B.1.1.3850.022321
N162P162SCcTTcC29B.1.1.3850.008929
N162P162SCcTTcA29B.1.1.3850.008929
N162P162SCctTct88AY.780.012327
N162P162SCctTct88P.1.20.009249
N162P162SCctTct47B.1.258.110.001585
N162P162SCcTTcC27B.1.258.110.000793
N162P162SCcTTcA17B.1.258.110.000396
N162P162SCctTct66AY.430.000027
N162P162SCctTct25B.1.1.1700.002494
N162P162SCcTTcA25B.1.1.1700.002494
N162P162SCcTTcC15B.1.1.1700.001247
N162P162SCcTTcA25B.1.1.3720.001377
N162P162SCctTct25B.1.1.3720.001377
N162P162SCcTTcC15B.1.1.3720.000689
N162P162SCctTct35B.1.177.770.002179
N162P162SCcTTcC25B.1.177.770.001452
N162P162SCctTct25B.1.6090.000959
N162P162SCCtAGt15B.1.6090.000479
N162P162SCcTTcG15B.1.6090.000479
N162P162SCcTTcA15B.1.6090.000479
N162P162SCctTct44AY.260.000113
N162P162SCctTct34B.1.1.2770.002276
N162P162SCcTTcA14B.1.1.2770.000759
N162P162SCctTct34C.350.002322
N162P162SCcTTcC14C.350.000774
N162P162SCctTct34K.10.071429
N162P162SCcTTcC14K.10.02381
N162P162SCctTct33AY.250.000018
N162P162SCctTct33AY.350.000699
N162P162SCctTct33AY.46.40.000494
N162P162SCctTct23B.1.1.1890.003026
N162P162SCcTTcA13B.1.1.1890.001513
N162P162SCctTct13B.1.1.3010.001179
N162P162SCcTTcA13B.1.1.3010.001179
N162P162SCcTTcC13B.1.1.3010.001179
N162P162SCcTTcA13B.1.1.5150.02
N162P162SCcTTcC13B.1.1.5150.02
N162P162SCctTct13B.1.1.5150.02
N162P162SCctTct23B.1.177.860.000367
N162P162SCcTTcC13B.1.177.860.000183
N162P162SCcTTcA13B.1.2930.0125
N162P162SCcTTcC13B.1.2930.0125
N162P162SCctTct13B.1.2930.0125
N162P162SCctTct23B.1.3510.000059
N162P162SCcTTcC13B.1.3510.00003
N162P162SCcTTcA13B.1.780.008547
N162P162SCctTct13B.1.780.008547
N162P162SCcTTcC13B.1.780.008547
N162P162SCctTct33B.1.9.40.018405
N162P162SCctTct33D.20.000225
N162P162SCctTct22AY.1140.000462
N162P162SCctTct22AY.200.000078
N162P162SCctTct22AY.290.000032
N162P162SCctTct22AY.560.00321
N162P162SCctTct22AY.60.000082
N162P162SCctTct22AY.80.001212
N162P162SCctTct12B.1.1.1930.111111
N162P162SCcTTcA12B.1.1.1930.111111
N162P162SCctTct22B.1.1.2220.000408
N162P162SCctTct22B.1.1.3170.000823
N162P162SCctTct22B.1.1.5190.000079
N162P162SCctTct12B.1.1.700.000341
N162P162SCcTTcC12B.1.1.700.000341
N162P162SCctTct22B.1.1460.008475
N162P162SCcTTcA12B.1.177.330.001645
N162P162SCctTct12B.1.177.330.001645
N162P162SCcTTcC12B.1.177.500.004695
N162P162SCctTct12B.1.177.500.004695
N162P162SCctTct12B.1.177.750.001041
N162P162SCcTTcC12B.1.177.750.001041
N162P162SCctTct22B.1.177.810.000379
N162P162SCctTct12B.1.2840.013158
N162P162SCcTTcA12B.1.2840.013158
N162P162SCctTct22B.1.4270.000101
N162P162SCcTTcA12B.1.5760.000907
N162P162SCctTct12B.1.5760.000907
N162P162SCctTct22B.1.5820.000981
N162P162SCctTct12C.300.001727
N162P162SCcTTcC12C.300.001727
N162P162SCctTct22C.370.000232
N162P162SCctTct22Q.10.000253
N162P162SCctTct110.055556
N162P162SCctTct11A.210.00277
N162P162SCctTct11AY.1000.000046
N162P162SCctTct11AY.1020.000027
N162P162SCctTct11AY.1160.000287
N162P162SCctTct11AY.270.000065
N162P162SCctTct11AY.330.000067
N162P162SCctTct11AY.370.000316
N162P162SCctTct11AY.380.000499
N162P162SCctTct11AY.4.20.000022
N162P162SCctTct11AY.450.000122
N162P162SCctTct11AY.460.000104
N162P162SCctTct11AY.480.000465
N162P162SCctTct11AY.50.000021
N162P162SCctTct11AY.70.000196
N162P162SCctTct11AY.850.000427
N162P162SCctTct11AY.90.000068
N162P162SCctTct11AY.900.000684
N162P162SCctTct11B.1.1.1290.009174
N162P162SCctTct11B.1.1.1570.000913
N162P162SCctTct11B.1.1.2000.007463
N162P162SCctTct11B.1.1.3180.000302
N162P162SCctTct11B.1.1.330.000421
N162P162SCctTct11B.1.1.4130.006897
N162P162SCctTct11B.1.177.350.000691
N162P162SCctTct11B.1.177.830.001481
N162P162SCctTct11B.1.2220.001692
N162P162SCctTct11B.1.2320.000537
N162P162SCCTAGC11B.1.2430.00007
N162P162SCctTct11B.1.3490.000715
N162P162SCctTct11B.1.360.000146
N162P162SCctTct11B.1.36.10.00114
N162P162SCctTct11B.1.36.240.006173
N162P162SCctTct11B.1.5250.000113
N162P162SCctTct11B.1.5260.000024
N162P162SCctTct11B.1.5650.00081
N162P162SCctTct11B.1.617.10.000129
N162P162SCctTct11B.1.9.50.005682
N162P162SCctTct11B.30.000831
N162P162SCctTct11P.1.140.000048