CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : Mut = P162R

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N162P162RnonsyncCtcGt54220.40740728757-28759
N162P162RnonsyncCTcGC54140.25925928757-28759
N162P162RnonsyncCTcGA54100.18518528757-28759
N162P162RnonsynCCTAGA5460.11111128757-28759
N162P162RnonsynCCTAGG5410.018518528757-28759
N162P162RnonsyncCTcGG5410.018518528757-28759

Details of the mutation P162R within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N162P162RcCtcGt2254All0.000004
N162P162RcCTcGC1454All0.000003
N162P162RcCTcGA1054All0.000002
N162P162RCCTAGA654All0.000001
N162P162RCCTAGG154All0
N162P162RcCTcGG154All0
N162P162RcCtcGt1025B.10.000092
N162P162RcCTcGC925B.10.000082
N162P162RcCTcGA425B.10.000037
N162P162RCCTAGA225B.10.000018
N162P162RcCtcGt27B.1.1770.000026
N162P162RcCTcGC27B.1.1770.000026
N162P162RCCTAGA27B.1.1770.000026
N162P162RcCTcGA17B.1.1770.000013
N162P162RCCTAGG15B.1.6090.000479
N162P162RcCtcGt15B.1.6090.000479
N162P162RcCTcGA15B.1.6090.000479
N162P162RCCTAGA15B.1.6090.000479
N162P162RcCTcGG15B.1.6090.000479
N162P162RcCtcGt13B.1.1.70.000001
N162P162RCCTAGA13B.1.1.70.000001
N162P162RcCTcGA13B.1.1.70.000001
N162P162RcCtcGt23K.10.047619
N162P162RcCTcGC13K.10.02381
N162P162RcCTcGC12B.1.1.3850.004464
N162P162RcCtcGt12B.1.1.3850.004464
N162P162RcCtcGt22B.1.1.5190.000079
N162P162RcCTcGC12B.1.2580.000067
N162P162RcCtcGt12B.1.2580.000067
N162P162RcCtcGt12B.1.5760.000907
N162P162RcCTcGA12B.1.5760.000907
N162P162RcCTcGA11AY.40.000002
N162P162RcCtcGt11AY.470.000031
N162P162RcCTcGA11B.1.1.4200.001006