CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = N : Mut = P151L

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
N	151	P151L		nonsyn	cCt	cTt	16417	16416	0.999939	28724-28726
N	151	P151L		nonsyn	cCT	cTA	16417	1	0.0000609125	28724-28726

Details of the mutation P151L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
N	151	P151L	cCt	cTt	16416	16417	All	0.00314
N	151	P151L	cCT	cTA	1	16417	All	0
N	151	P151L	cCt	cTt	9285	9285	B.1.1.284	0.997208
N	151	P151L	cCt	cTt	3088	3088	B.1.1.7	0.002764
N	151	P151L	cCt	cTt	1131	1131	B.1.617.2	0.004259
N	151	P151L	cCt	cTt	437	437	AY.4	0.00068
N	151	P151L	cCt	cTt	421	421	AY.98	0.033257
N	151	P151L	cCt	cTt	192	192	AY.103	0.001192
N	151	P151L	cCt	cTt	171	171	B.1.1	0.003102
N	151	P151L	cCt	cTt	165	166	AY.44	0.001004
N	151	P151L	cCT	cTA	1	166	AY.44	0.000006
N	151	P151L	cCt	cTt	140	140	AY.39.1	0.005546
N	151	P151L	cCt	cTt	82	82	AY.120	0.003049
N	151	P151L	cCt	cTt	80	80	AY.20	0.003109
N	151	P151L	cCt	cTt	77	77	AY.43	0.000341
N	151	P151L	cCt	cTt	71	71	B.1.177	0.000935
N	151	P151L	cCt	cTt	70	70	AY.25	0.000421
N	151	P151L	cCt	cTt	58	58	D.2	0.004352
N	151	P151L	cCt	cTt	52	52	AY.3	0.000517
N	151	P151L	cCt	cTt	35	35	B.1	0.000321
N	151	P151L	cCt	cTt	30	30	B.1.1.160	0.714286
N	151	P151L	cCt	cTt	28	28	AY.5	0.000578
N	151	P151L	cCt	cTt	28	28	B.1.351	0.000832
N	151	P151L	cCt	cTt	28	28	B.1.427	0.001414
N	151	P151L	cCt	cTt	28	28	B.23	0.081871
N	151	P151L	cCt	cTt	27	27	B.1.2	0.000238
N	151	P151L	cCt	cTt	25	25	AY.4.2	0.000542
N	151	P151L	cCt	cTt	24	24	AY.46.6	0.001733
N	151	P151L	cCt	cTt	24	24	B.1.1.294	0.03038
N	151	P151L	cCt	cTt	23	23	AY.23	0.001604
N	151	P151L	cCt	cTt	21	21	B.1.429	0.000494
N	151	P151L	cCt	cTt	20	20	AY.102	0.00053
N	151	P151L	cCt	cTt	19	19	B.1.1.519	0.000755
N	151	P151L	cCt	cTt	18	18	P.1	0.000284
N	151	P151L	cCt	cTt	17	17	B.1.369	0.004849
N	151	P151L	cCt	cTt	16	16	AY.29	0.000252
N	151	P151L	cCt	cTt	16	16	AY.39	0.000395
N	151	P151L	cCt	cTt	14	14	B.1.597	0.064815
N	151	P151L	cCt	cTt	12	12	B.1.526	0.000282
N	151	P151L	cCt	cTt	10	10	AY.118	0.000626
N	151	P151L	cCt	cTt	10	10	AY.26	0.000283
N	151	P151L	cCt	cTt	10	10	AY.46.4	0.001645
N	151	P151L	cCt	cTt	10	10	B.1.160	0.000312
N	151	P151L	cCt	cTt	9	9	B.1.1.291	0.006682
N	151	P151L	cCt	cTt	8	8	AY.106	0.002679
N	151	P151L	cCt	cTt	8	8	AY.37	0.002528
N	151	P151L	cCt	cTt	8	8	B.1.1.135	0.037559
N	151	P151L	cCt	cTt	7	7	AY.119	0.000247
N	151	P151L	cCt	cTt	7	7	B.1.177.12	0.001062
N	151	P151L	cCt	cTt	6	6	AY.29.1	0.001323
N	151	P151L	cCt	cTt	6	6	AY.46.1	0.00616
N	151	P151L	cCt	cTt	6	6	AY.99	0.006296
N	151	P151L	cCt	cTt	6	6	B.1.1.420	0.006036
N	151	P151L	cCt	cTt	6	6	B.1.221	0.000426
N	151	P151L	cCt	cTt	6	6	B.1.348	0.109091
N	151	P151L	cCt	cTt	6	6	B.1.36	0.000875
N	151	P151L	cCt	cTt	6	6	C.37	0.000696
N	151	P151L	cCt	cTt	5	5	AY.42	0.000201
N	151	P151L	cCt	cTt	5	5	AY.6	0.000206
N	151	P151L	cCt	cTt	5	5	AY.9.2	0.000184
N	151	P151L	cCt	cTt	5	5	AY.95	0.003805
N	151	P151L	cCt	cTt	5	5	B.1.221.1	0.014535
N	151	P151L	cCt	cTt	5	5	B.1.568	0.005556
N	151	P151L	cCt	cTt	5	5	Q.8	0.000825
N	151	P151L	cCt	cTt	4	4	AY.121	0.000541
N	151	P151L	cCt	cTt	4	4	AY.3.1	0.000341
N	151	P151L	cCt	cTt	4	4	AY.33	0.000267
N	151	P151L	cCt	cTt	4	4	AY.45	0.000487
N	151	P151L	cCt	cTt	4	4	AY.46	0.000416
N	151	P151L	cCt	cTt	4	4	AY.5.4	0.001107
N	151	P151L	cCt	cTt	4	4	AY.68	0.001095
N	151	P151L	cCt	cTt	4	4	B.1.177.39	0.061538
N	151	P151L	cCt	cTt	4	4	B.1.214.4	0.036364
N	151	P151L	cCt	cTt	4	4	B.1.243	0.000278
N	151	P151L	cCt	cTt	4	4	B.1.36.18	0.001681
N	151	P151L	cCt	cTt	4	4	B.1.525	0.000453
N	151	P151L	cCt	cTt	4	4	B.1.621	0.000354
N	151	P151L	cCt	cTt	4	4	P.2	0.000747
N	151	P151L	cCt	cTt	3	3	AY.100	0.000138
N	151	P151L	cCt	cTt	3	3	AY.105	0.001929
N	151	P151L	cCt	cTt	3	3	AY.16	0.001139
N	151	P151L	cCt	cTt	3	3	AY.61	0.000314
N	151	P151L	cCt	cTt	3	3	AY.9	0.000203
N	151	P151L	cCt	cTt	3	3	B.1.1.253	0.007519
N	151	P151L	cCt	cTt	3	3	B.1.1.37	0.000579
N	151	P151L	cCt	cTt	3	3	B.1.1.434	0.001046
N	151	P151L	cCt	cTt	3	3	B.1.1.89	0.018182
N	151	P151L	cCt	cTt	3	3	B.1.177.4	0.000633
N	151	P151L	cCt	cTt	3	3	B.1.177.57	0.000843
N	151	P151L	cCt	cTt	3	3	B.1.177.82	0.001432
N	151	P151L	cCt	cTt	3	3	B.1.234	0.000396
N	151	P151L	cCt	cTt	3	3	B.1.428	0.003061
N	151	P151L	cCt	cTt	3	3	P.1.14	0.000143
N	151	P151L	cCt	cTt	3	3	Q.1	0.000379
N	151	P151L	cCt	cTt	3	3	R.1	0.00027
N	151	P151L	cCt	cTt	2	2	A	0.000774
N	151	P151L	cCt	cTt	2	2	AY.120.2	0.002571
N	151	P151L	cCt	cTt	2	2	AY.16.1	0.00094
N	151	P151L	cCt	cTt	2	2	AY.28	0.003781
N	151	P151L	cCt	cTt	2	2	AY.32	0.001065
N	151	P151L	cCt	cTt	2	2	AY.34	0.000194
N	151	P151L	cCt	cTt	2	2	AY.35	0.000466
N	151	P151L	cCt	cTt	2	2	AY.46.2	0.001271
N	151	P151L	cCt	cTt	2	2	AY.48	0.00093
N	151	P151L	cCt	cTt	2	2	AY.52	0.001629
N	151	P151L	cCt	cTt	2	2	AY.7.1	0.000225
N	151	P151L	cCt	cTt	2	2	AY.7.2	0.001119
N	151	P151L	cCt	cTt	2	2	AY.75	0.000112
N	151	P151L	cCt	cTt	2	2	AY.75.1	0.000361
N	151	P151L	cCt	cTt	2	2	AY.98.1	0.000097
N	151	P151L	cCt	cTt	2	2	B.1.1.214	0.000111
N	151	P151L	cCt	cTt	2	2	B.1.1.28	0.000622
N	151	P151L	cCt	cTt	2	2	B.1.1.280	0.006173
N	151	P151L	cCt	cTt	2	2	B.1.1.306	0.000877
N	151	P151L	cCt	cTt	2	2	B.1.1.56	0.035714
N	151	P151L	cCt	cTt	2	2	B.1.160.30	0.005952
N	151	P151L	cCt	cTt	2	2	B.1.177.81	0.000379
N	151	P151L	cCt	cTt	2	2	B.1.177.86	0.000367
N	151	P151L	cCt	cTt	2	2	B.1.258	0.000133
N	151	P151L	cCt	cTt	2	2	B.1.351.3	0.001753
N	151	P151L	cCt	cTt	2	2	B.1.36.17	0.000988
N	151	P151L	cCt	cTt	2	2	B.1.36.27	0.001527
N	151	P151L	cCt	cTt	2	2	B.1.371	0.002245
N	151	P151L	cCt	cTt	2	2	B.1.399	0.003868
N	151	P151L	cCt	cTt	2	2	B.1.466.2	0.000782
N	151	P151L	cCt	cTt	2	2	B.1.575	0.000607
N	151	P151L	cCt	cTt	2	2	B.1.609	0.000959
N	151	P151L	cCt	cTt	2	2	B.1.623	0.001073
N	151	P151L	cCt	cTt	2	2	B.1.637	0.000146
N	151	P151L	cCt	cTt	2	2	P.1.15	0.000465
N	151	P151L	cCt	cTt	2	2	P.1.16	0.000748
N	151	P151L	cCt	cTt	1	1	A.2.2	0.001689
N	151	P151L	cCt	cTt	1	1	A.2.5	0.000499
N	151	P151L	cCt	cTt	1	1	A.2.5.2	0.001572
N	151	P151L	cCt	cTt	1	1	AD.2	0.000219
N	151	P151L	cCt	cTt	1	1	AE.8	0.000489
N	151	P151L	cCt	cTt	1	1	AU.2	0.002421
N	151	P151L	cCt	cTt	1	1	AY.101	0.00049
N	151	P151L	cCt	cTt	1	1	AY.109	0.00074
N	151	P151L	cCt	cTt	1	1	AY.11	0.001339
N	151	P151L	cCt	cTt	1	1	AY.110	0.000113
N	151	P151L	cCt	cTt	1	1	AY.117	0.000085
N	151	P151L	cCt	cTt	1	1	AY.12	0.000316
N	151	P151L	cCt	cTt	1	1	AY.2	0.000356
N	151	P151L	cCt	cTt	1	1	AY.34.1	0.00051
N	151	P151L	cCt	cTt	1	1	AY.4.2.1	0.000149
N	151	P151L	cCt	cTt	1	1	AY.47	0.000031
N	151	P151L	cCt	cTt	1	1	AY.53	0.000288
N	151	P151L	cCt	cTt	1	1	AY.63	0.000387
N	151	P151L	cCt	cTt	1	1	AY.65	0.000533
N	151	P151L	cCt	cTt	1	1	AY.69	0.000187
N	151	P151L	cCt	cTt	1	1	AY.7	0.000196
N	151	P151L	cCt	cTt	1	1	AY.73	0.000665
N	151	P151L	cCt	cTt	1	1	AY.74	0.000116
N	151	P151L	cCt	cTt	1	1	AY.8	0.000606
N	151	P151L	cCt	cTt	1	1	AY.9.1	0.000084
N	151	P151L	cCt	cTt	1	1	AY.92	0.000287
N	151	P151L	cCt	cTt	1	1	AY.93	0.000273
N	151	P151L	cCt	cTt	1	1	AY.99.2	0.000092
N	151	P151L	cCt	cTt	1	1	B.1.1.1	0.000327
N	151	P151L	cCt	cTt	1	1	B.1.1.10	0.001115
N	151	P151L	cCt	cTt	1	1	B.1.1.153	0.001095
N	151	P151L	cCt	cTt	1	1	B.1.1.222	0.000204
N	151	P151L	cCt	cTt	1	1	B.1.1.236	0.006897
N	151	P151L	cCt	cTt	1	1	B.1.1.25	0.000569
N	151	P151L	cCt	cTt	1	1	B.1.1.266	0.012195
N	151	P151L	cCt	cTt	1	1	B.1.1.279	0.001121
N	151	P151L	cCt	cTt	1	1	B.1.1.312	0.001912
N	151	P151L	cCt	cTt	1	1	B.1.1.317	0.000412
N	151	P151L	cCt	cTt	1	1	B.1.1.33	0.000421
N	151	P151L	cCt	cTt	1	1	B.1.1.348	0.000796
N	151	P151L	cCt	cTt	1	1	B.1.1.369	0.000446
N	151	P151L	cCt	cTt	1	1	B.1.1.378	0.007299
N	151	P151L	cCt	cTt	1	1	B.1.1.487	0.005587
N	151	P151L	cCt	cTt	1	1	B.1.1.50	0.000679
N	151	P151L	cCt	cTt	1	1	B.1.1.52	0.012195
N	151	P151L	cCt	cTt	1	1	B.1.1.70	0.000341
N	151	P151L	cCt	cTt	1	1	B.1.110.3	0.000718
N	151	P151L	cCt	cTt	1	1	B.1.112	0.005181
N	151	P151L	cCt	cTt	1	1	B.1.177.10	0.000878
N	151	P151L	cCt	cTt	1	1	B.1.177.16	0.000664
N	151	P151L	cCt	cTt	1	1	B.1.177.17	0.000821
N	151	P151L	cCt	cTt	1	1	B.1.177.35	0.000691
N	151	P151L	cCt	cTt	1	1	B.1.177.54	0.000606
N	151	P151L	cCt	cTt	1	1	B.1.177.55	0.002331
N	151	P151L	cCt	cTt	1	1	B.1.177.58	0.001332
N	151	P151L	cCt	cTt	1	1	B.1.177.65	0.000665
N	151	P151L	cCt	cTt	1	1	B.1.177.8	0.000752
N	151	P151L	cCt	cTt	1	1	B.1.239	0.001221
N	151	P151L	cCt	cTt	1	1	B.1.281	0.021739
N	151	P151L	cCt	cTt	1	1	B.1.311	0.000275
N	151	P151L	cCt	cTt	1	1	B.1.356	0.001727
N	151	P151L	cCt	cTt	1	1	B.1.36.1	0.00114
N	151	P151L	cCt	cTt	1	1	B.1.36.22	0.001208
N	151	P151L	cCt	cTt	1	1	B.1.36.24	0.006173
N	151	P151L	cCt	cTt	1	1	B.1.367	0.000792
N	151	P151L	cCt	cTt	1	1	B.1.396	0.000706
N	151	P151L	cCt	cTt	1	1	B.1.416	0.001269
N	151	P151L	cCt	cTt	1	1	B.1.436	0.001029
N	151	P151L	cCt	cTt	1	1	B.1.448	0.002625
N	151	P151L	cCt	cTt	1	1	B.1.468	0.005714
N	151	P151L	cCt	cTt	1	1	B.1.503	0.002488
N	151	P151L	cCt	cTt	1	1	B.1.541	0.004425
N	151	P151L	cCt	cTt	1	1	B.1.560	0.00463
N	151	P151L	cCt	cTt	1	1	B.1.561	0.000397
N	151	P151L	cCt	cTt	1	1	B.1.564	0.000426
N	151	P151L	cCt	cTt	1	1	B.1.564.1	0.001577
N	151	P151L	cCt	cTt	1	1	B.1.577	0.000687
N	151	P151L	cCt	cTt	1	1	B.1.582	0.000491
N	151	P151L	cCt	cTt	1	1	B.1.596	0.000087
N	151	P151L	cCt	cTt	1	1	B.1.605	0.005952
N	151	P151L	cCt	cTt	1	1	B.1.617.1	0.000129
N	151	P151L	cCt	cTt	1	1	B.1.627	0.00202
N	151	P151L	cCt	cTt	1	1	B.1.630	0.005236
N	151	P151L	cCt	cTt	1	1	B.1.9.5	0.005682
N	151	P151L	cCt	cTt	1	1	C.1	0.002392
N	151	P151L	cCt	cTt	1	1	C.14	0.004329
N	151	P151L	cCt	cTt	1	1	C.3	0.007634
N	151	P151L	cCt	cTt	1	1	C.36	0.000911
N	151	P151L	cCt	cTt	1	1	D.5	0.004975
N	151	P151L	cCt	cTt	1	1	N.5	0.001767
N	151	P151L	cCt	cTt	1	1	P.1.2	0.001156
N	151	P151L	cCt	cTt	1	1	Q.2	0.000613
N	151	P151L	cCt	cTt	1	1	Q.3	0.000145
N	151	P151L	cCt	cTt	1	1	U.2	0.008772

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.