CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
N | 13 | P13L | nonsyn | cCc | cTc | 34360 | 33734 | 0.981781 | 28310-28312 | |
N | 13 | P13L | nonsyn | cCC | cTT | 34360 | 626 | 0.0182189 | 28310-28312 |
Details of the mutation P13L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
N | 13 | P13L | cCc | cTc | 33734 | 34360 | All | 0.006452 |
N | 13 | P13L | cCC | cTT | 626 | 34360 | All | 0.00012 |
N | 13 | P13L | cCc | cTc | 12624 | 13189 | B.1.526 | 0.296721 |
N | 13 | P13L | cCC | cTT | 565 | 13189 | B.1.526 | 0.01328 |
N | 13 | P13L | cCc | cTc | 8454 | 8477 | C.37 | 0.981198 |
N | 13 | P13L | cCC | cTT | 23 | 8477 | C.37 | 0.002669 |
N | 13 | P13L | cCc | cTc | 1558 | 1558 | B.1.619.1 | 0.999359 |
N | 13 | P13L | cCc | cTc | 1116 | 1116 | B.1.619 | 0.972125 |
N | 13 | P13L | cCc | cTc | 1055 | 1055 | B.6.6 | 0.937778 |
N | 13 | P13L | cCc | cTc | 1027 | 1032 | B.6 | 0.934486 |
N | 13 | P13L | cCC | cTT | 5 | 1032 | B.6 | 0.00455 |
N | 13 | P13L | cCc | cTc | 858 | 858 | B.1.2 | 0.007555 |
N | 13 | P13L | cCc | cTc | 592 | 592 | A.2.2 | 1 |
N | 13 | P13L | cCc | cTc | 450 | 450 | AY.26 | 0.01274 |
N | 13 | P13L | cCc | cTc | 437 | 437 | B.1.1.7 | 0.000391 |
N | 13 | P13L | cCc | cTc | 409 | 410 | B.1 | 0.003746 |
N | 13 | P13L | cCC | cTT | 1 | 410 | B.1 | 0.000009 |
N | 13 | P13L | cCc | cTc | 371 | 371 | C.37.1 | 0.971204 |
N | 13 | P13L | cCc | cTc | 330 | 330 | B.1.243 | 0.022963 |
N | 13 | P13L | cCc | cTc | 324 | 324 | B.1.241 | 0.262987 |
N | 13 | P13L | cCc | cTc | 235 | 235 | AY.4 | 0.000366 |
N | 13 | P13L | cCc | cTc | 226 | 226 | C.1.2 | 0.961702 |
N | 13 | P13L | cCc | cTc | 222 | 222 | P.7 | 0.969432 |
N | 13 | P13L | cCc | cTc | 213 | 213 | B.1.351 | 0.006332 |
N | 13 | P13L | cCc | cTc | 180 | 181 | B.1.1 | 0.003265 |
N | 13 | P13L | cCC | cTT | 1 | 181 | B.1.1 | 0.000018 |
N | 13 | P13L | cCc | cTc | 145 | 145 | AY.25 | 0.000872 |
N | 13 | P13L | cCc | cTc | 143 | 143 | P.1 | 0.002253 |
N | 13 | P13L | cCc | cTc | 121 | 121 | AY.44 | 0.000736 |
N | 13 | P13L | cCc | cTc | 121 | 121 | B.6.8 | 1 |
N | 13 | P13L | cCc | cTc | 121 | 121 | C.38 | 0.975806 |
N | 13 | P13L | cCc | cTc | 107 | 107 | AP.1 | 0.160661 |
N | 13 | P13L | cCc | cTc | 79 | 104 | B.1.617.2 | 0.000297 |
N | 13 | P13L | cCC | cTT | 25 | 104 | B.1.617.2 | 0.000094 |
N | 13 | P13L | cCc | cTc | 85 | 85 | B.1.177 | 0.001119 |
N | 13 | P13L | cCc | cTc | 77 | 77 | B.1.1.28 | 0.023965 |
N | 13 | P13L | cCc | cTc | 75 | 75 | B.1.258 | 0.004991 |
N | 13 | P13L | cCc | cTc | 68 | 68 | B.1.243.2 | 0.985507 |
N | 13 | P13L | cCc | cTc | 63 | 63 | B.1.1.284 | 0.006766 |
N | 13 | P13L | cCc | cTc | 61 | 61 | B.1.36.23 | 1 |
N | 13 | P13L | cCc | cTc | 50 | 50 | AY.107 | 0.023299 |
N | 13 | P13L | cCc | cTc | 49 | 49 | B.1.118 | 0.328859 |
N | 13 | P13L | cCc | cTc | 45 | 45 | AY.42 | 0.00181 |
N | 13 | P13L | cCc | cTc | 41 | 43 | AY.43 | 0.000182 |
N | 13 | P13L | cCC | cTT | 2 | 43 | AY.43 | 0.000009 |
N | 13 | P13L | cCc | cTc | 43 | 43 | B.1.429 | 0.001012 |
N | 13 | P13L | cCc | cTc | 40 | 40 | AY.103 | 0.000248 |
N | 13 | P13L | cCc | cTc | 38 | 38 | B.1.239 | 0.046398 |
N | 13 | P13L | cCc | cTc | 38 | 38 | B.6.1 | 1 |
N | 13 | P13L | cCc | cTc | 37 | 37 | B.6.3 | 0.973684 |
N | 13 | P13L | cCc | cTc | 37 | 37 | C.36.3.1 | 0.100543 |
N | 13 | P13L | cCc | cTc | 35 | 35 | B.3.1 | 0.058043 |
N | 13 | P13L | cCc | cTc | 30 | 30 | B.1.1.222 | 0.00612 |
N | 13 | P13L | cCc | cTc | 30 | 30 | B.1.427 | 0.001515 |
N | 13 | P13L | cCc | cTc | 28 | 28 | B | 0.003579 |
N | 13 | P13L | cCc | cTc | 28 | 28 | B.1.1.519 | 0.001112 |
N | 13 | P13L | cCc | cTc | 28 | 28 | B.1.1.70 | 0.00955 |
N | 13 | P13L | cCc | cTc | 28 | 28 | B.1.160 | 0.000873 |
N | 13 | P13L | cCc | cTc | 28 | 28 | R.1 | 0.00252 |
N | 13 | P13L | cCc | cTc | 27 | 27 | B.1.221 | 0.001918 |
N | 13 | P13L | cCc | cTc | 27 | 27 | B.1.36.29 | 0.013968 |
N | 13 | P13L | cCc | cTc | 22 | 22 | B.6.4 | 1 |
N | 13 | P13L | cCc | cTc | 20 | 20 | B.1.617.1 | 0.002579 |
N | 13 | P13L | cCc | cTc | 19 | 19 | C.36.3 | 0.010777 |
N | 13 | P13L | cCc | cTc | 18 | 18 | A | 0.006966 |
N | 13 | P13L | cCc | cTc | 18 | 18 | B.1.1.33 | 0.007576 |
N | 13 | P13L | cCc | cTc | 18 | 18 | B.1.621.1 | 0.009105 |
N | 13 | P13L | cCc | cTc | 17 | 17 | AY.27 | 0.0011 |
N | 13 | P13L | cCc | cTc | 17 | 17 | AY.3 | 0.000169 |
N | 13 | P13L | cCc | cTc | 17 | 17 | B.1.1.312 | 0.032505 |
N | 13 | P13L | cCc | cTc | 17 | 17 | B.1.214.2 | 0.010192 |
N | 13 | P13L | cCc | cTc | 16 | 16 | B.1.1.303 | 0.044199 |
N | 13 | P13L | cCc | cTc | 16 | 16 | B.1.234 | 0.002111 |
N | 13 | P13L | cCc | cTc | 16 | 16 | B.1.258.17 | 0.001664 |
N | 13 | P13L | cCc | cTc | 16 | 16 | B.1.575 | 0.004854 |
N | 13 | P13L | cCc | cTc | 16 | 16 | B.1.637 | 0.001169 |
N | 13 | P13L | cCc | cTc | 16 | 16 | B.6.2 | 1 |
N | 13 | P13L | cCc | cTc | 15 | 15 | B.1.596 | 0.001307 |
N | 13 | P13L | cCc | cTc | 15 | 15 | P.1.14 | 0.000717 |
N | 13 | P13L | cCc | cTc | 11 | 14 | AY.102 | 0.000292 |
N | 13 | P13L | cCC | cTT | 3 | 14 | AY.102 | 0.00008 |
N | 13 | P13L | cCc | cTc | 13 | 13 | AY.47 | 0.000404 |
N | 13 | P13L | cCc | cTc | 13 | 13 | AY.75 | 0.000728 |
N | 13 | P13L | cCc | cTc | 13 | 13 | B.1.621 | 0.001151 |
N | 13 | P13L | cCc | cTc | 13 | 13 | B.6.5 | 1 |
N | 13 | P13L | cCc | cTc | 13 | 13 | P.1.15 | 0.00302 |
N | 13 | P13L | cCc | cTc | 12 | 12 | AY.119 | 0.000424 |
N | 13 | P13L | cCc | cTc | 12 | 12 | AY.85 | 0.005126 |
N | 13 | P13L | cCc | cTc | 12 | 12 | B.1.623 | 0.006438 |
N | 13 | P13L | cCc | cTc | 11 | 11 | AY.6 | 0.000452 |
N | 13 | P13L | cCc | cTc | 11 | 11 | AY.91 | 0.008035 |
N | 13 | P13L | cCc | cTc | 11 | 11 | B.1.1.318 | 0.003319 |
N | 13 | P13L | cCc | cTc | 11 | 11 | B.1.157 | 0.032836 |
N | 13 | P13L | cCc | cTc | 10 | 10 | AY.16 | 0.003797 |
N | 13 | P13L | cCc | cTc | 10 | 10 | AY.39 | 0.000247 |
N | 13 | P13L | cCc | cTc | 10 | 10 | B.1.1.25 | 0.005685 |
N | 13 | P13L | cCc | cTc | 10 | 10 | D.5 | 0.049751 |
N | 13 | P13L | cCc | cTc | 9 | 9 | AY.23 | 0.000628 |
N | 13 | P13L | cCc | cTc | 9 | 9 | AY.4.2.1 | 0.001341 |
N | 13 | P13L | cCc | cTc | 9 | 9 | AY.5 | 0.000186 |
N | 13 | P13L | cCc | cTc | 9 | 9 | AY.9.1 | 0.000754 |
N | 13 | P13L | cCc | cTc | 9 | 9 | B.1.177.7 | 0.001484 |
N | 13 | P13L | cCc | cTc | 9 | 9 | B.1.609 | 0.004314 |
N | 13 | P13L | cCc | cTc | 8 | 8 | B.1.1.216 | 0.007124 |
N | 13 | P13L | cCc | cTc | 7 | 7 | AY.110 | 0.000789 |
N | 13 | P13L | cCc | cTc | 7 | 7 | AY.2 | 0.002493 |
N | 13 | P13L | cCc | cTc | 7 | 7 | AY.4.2 | 0.000152 |
N | 13 | P13L | cCc | cTc | 7 | 7 | AY.9.2 | 0.000257 |
N | 13 | P13L | cCc | cTc | 7 | 7 | B.1.1.220 | 0.013011 |
N | 13 | P13L | cCc | cTc | 7 | 7 | B.1.1.434 | 0.00244 |
N | 13 | P13L | cCc | cTc | 7 | 7 | B.1.1.63 | 0.002701 |
N | 13 | P13L | cCc | cTc | 7 | 7 | B.1.177.73 | 0.003964 |
N | 13 | P13L | cCc | cTc | 7 | 7 | B.1.632 | 0.04698 |
N | 13 | P13L | cCc | cTc | 6 | 6 | B.1.1.198 | 0.008811 |
N | 13 | P13L | cCc | cTc | 6 | 6 | B.1.1.291 | 0.004454 |
N | 13 | P13L | cCc | cTc | 6 | 6 | B.1.1.432 | 0.007595 |
N | 13 | P13L | cCc | cTc | 6 | 6 | B.1.369 | 0.001711 |
N | 13 | P13L | cCc | cTc | 5 | 5 | AY.100 | 0.00023 |
N | 13 | P13L | cCc | cTc | 5 | 5 | AY.20 | 0.000194 |
N | 13 | P13L | cCc | cTc | 5 | 5 | AY.33 | 0.000334 |
N | 13 | P13L | cCc | cTc | 5 | 5 | AY.61 | 0.000524 |
N | 13 | P13L | cCc | cTc | 5 | 5 | B.1.1.1 | 0.001633 |
N | 13 | P13L | cCc | cTc | 5 | 5 | B.1.1.372 | 0.003444 |
N | 13 | P13L | cCc | cTc | 5 | 5 | B.1.177.81 | 0.000947 |
N | 13 | P13L | cCc | cTc | 5 | 5 | B.1.210 | 0.010661 |
N | 13 | P13L | cCc | cTc | 5 | 5 | B.1.36.1 | 0.005701 |
N | 13 | P13L | cCc | cTc | 5 | 5 | B.1.465 | 0.019011 |
N | 13 | P13L | cCc | cTc | 5 | 5 | B.1.468 | 0.028571 |
N | 13 | P13L | cCc | cTc | 5 | 5 | B.1.544 | 0.03012 |
N | 13 | P13L | cCc | cTc | 5 | 5 | B.1.576 | 0.004533 |
N | 13 | P13L | cCc | cTc | 5 | 5 | B.1.578 | 0.089286 |
N | 13 | P13L | cCc | cTc | 5 | 5 | B.41 | 0.04 |
N | 13 | P13L | cCc | cTc | 5 | 5 | C.16 | 0.005302 |
N | 13 | P13L | cCc | cTc | 5 | 5 | P.1.12 | 0.00242 |
N | 13 | P13L | cCc | cTc | 5 | 5 | P.5 | 0.068493 |
N | 13 | P13L | cCc | cTc | 4 | 4 | AY.117 | 0.000338 |
N | 13 | P13L | cCc | cTc | 4 | 4 | AY.29 | 0.000063 |
N | 13 | P13L | cCc | cTc | 4 | 4 | AY.40 | 0.003857 |
N | 13 | P13L | cCc | cTc | 4 | 4 | AY.5.4 | 0.001107 |
N | 13 | P13L | cCc | cTc | 4 | 4 | AY.65 | 0.002132 |
N | 13 | P13L | cCc | cTc | 4 | 4 | AY.69 | 0.000747 |
N | 13 | P13L | cCc | cTc | 4 | 4 | B.1.1.44 | 0.009639 |
N | 13 | P13L | cCc | cTc | 4 | 4 | B.1.36 | 0.000584 |
N | 13 | P13L | cCc | cTc | 4 | 4 | B.1.400 | 0.001716 |
N | 13 | P13L | cCc | cTc | 4 | 4 | D.2 | 0.0003 |
N | 13 | P13L | cCc | cTc | 4 | 4 | P.1.17 | 0.000647 |
N | 13 | P13L | cCc | cTc | 3 | 3 | AY.106 | 0.001005 |
N | 13 | P13L | cCc | cTc | 3 | 3 | AY.111 | 0.000549 |
N | 13 | P13L | cCc | cTc | 3 | 3 | AY.120 | 0.000112 |
N | 13 | P13L | cCc | cTc | 3 | 3 | AY.35 | 0.000699 |
N | 13 | P13L | cCc | cTc | 3 | 3 | AY.48 | 0.001395 |
N | 13 | P13L | cCc | cTc | 3 | 3 | AY.54 | 0.000286 |
N | 13 | P13L | cCc | cTc | 3 | 3 | AY.59 | 0.001589 |
N | 13 | P13L | cCc | cTc | 3 | 3 | AY.75.1 | 0.000541 |
N | 13 | P13L | cCc | cTc | 3 | 3 | B.1.1.189 | 0.004539 |
N | 13 | P13L | cCc | cTc | 3 | 3 | B.1.1.317 | 0.001235 |
N | 13 | P13L | cCc | cTc | 3 | 3 | B.1.1.376 | 0.017857 |
N | 13 | P13L | cCc | cTc | 3 | 3 | B.1.1.452 | 0.333333 |
N | 13 | P13L | cCc | cTc | 3 | 3 | B.1.1.526 | 0.010638 |
N | 13 | P13L | cCc | cTc | 3 | 3 | B.1.1.528 | 0.014423 |
N | 13 | P13L | cCc | cTc | 3 | 3 | B.1.110.3 | 0.002155 |
N | 13 | P13L | cCc | cTc | 3 | 3 | B.1.111 | 0.003525 |
N | 13 | P13L | cCc | cTc | 3 | 3 | B.1.139 | 0.002199 |
N | 13 | P13L | cCc | cTc | 3 | 3 | B.1.160.25 | 0.033333 |
N | 13 | P13L | cCc | cTc | 3 | 3 | B.1.177.40 | 0.015464 |
N | 13 | P13L | cCc | cTc | 3 | 3 | B.1.177.75 | 0.003122 |
N | 13 | P13L | cCc | cTc | 3 | 3 | B.1.219 | 0.028302 |
N | 13 | P13L | cCc | cTc | 3 | 3 | B.1.36.17 | 0.001482 |
N | 13 | P13L | cCc | cTc | 3 | 3 | B.1.389 | 0.003006 |
N | 13 | P13L | cCc | cTc | 3 | 3 | B.1.436 | 0.003086 |
N | 13 | P13L | cCc | cTc | 3 | 3 | B.1.587 | 0.005693 |
N | 13 | P13L | cCc | cTc | 3 | 3 | B.1.628 | 0.001057 |
N | 13 | P13L | cCc | cTc | 3 | 3 | N.4 | 0.012766 |
N | 13 | P13L | cCc | cTc | 3 | 3 | N.5 | 0.0053 |
N | 13 | P13L | cCc | cTc | 3 | 3 | P.1.1 | 0.000953 |
N | 13 | P13L | cCc | cTc | 3 | 3 | P.1.16 | 0.001122 |
N | 13 | P13L | cCc | cTc | 3 | 3 | P.1.2 | 0.003468 |
N | 13 | P13L | cCc | cTc | 2 | 2 | A.1 | 0.000564 |
N | 13 | P13L | cCc | cTc | 2 | 2 | A.24 | 0.142857 |
N | 13 | P13L | cCc | cTc | 2 | 2 | AY.121 | 0.000271 |
N | 13 | P13L | cCc | cTc | 2 | 2 | AY.14 | 0.000176 |
N | 13 | P13L | cCc | cTc | 2 | 2 | AY.23.1 | 0.000835 |
N | 13 | P13L | cCc | cTc | 2 | 2 | AY.28 | 0.003781 |
N | 13 | P13L | cCc | cTc | 2 | 2 | AY.3.1 | 0.000171 |
N | 13 | P13L | cCc | cTc | 2 | 2 | AY.39.1 | 0.000079 |
N | 13 | P13L | cCc | cTc | 2 | 2 | AY.45 | 0.000243 |
N | 13 | P13L | cCc | cTc | 2 | 2 | AY.46.6 | 0.000144 |
N | 13 | P13L | cCc | cTc | 1 | 2 | AY.62 | 0.000436 |
N | 13 | P13L | cCC | cTT | 1 | 2 | AY.62 | 0.000436 |
N | 13 | P13L | cCc | cTc | 2 | 2 | AY.71 | 0.00095 |
N | 13 | P13L | cCc | cTc | 2 | 2 | AY.9 | 0.000135 |
N | 13 | P13L | cCc | cTc | 2 | 2 | AY.98 | 0.000158 |
N | 13 | P13L | cCc | cTc | 2 | 2 | AY.98.1 | 0.000097 |
N | 13 | P13L | cCc | cTc | 2 | 2 | AZ.2 | 0.001642 |
N | 13 | P13L | cCc | cTc | 2 | 2 | B.1.1.176 | 0.000879 |
N | 13 | P13L | cCc | cTc | 2 | 2 | B.1.1.214 | 0.000111 |
N | 13 | P13L | cCc | cTc | 2 | 2 | B.1.1.343 | 0.041667 |
N | 13 | P13L | cCc | cTc | 2 | 2 | B.1.1.37 | 0.000386 |
N | 13 | P13L | cCc | cTc | 2 | 2 | B.1.1.416 | 0.00181 |
N | 13 | P13L | cCc | cTc | 2 | 2 | B.1.1.464 | 0.002946 |
N | 13 | P13L | cCc | cTc | 2 | 2 | B.1.1.466 | 0.017391 |
N | 13 | P13L | cCc | cTc | 2 | 2 | B.1.160.30 | 0.005952 |
N | 13 | P13L | cCc | cTc | 2 | 2 | B.1.177.21 | 0.000153 |
N | 13 | P13L | cCc | cTc | 2 | 2 | B.1.177.44 | 0.001038 |
N | 13 | P13L | cCc | cTc | 2 | 2 | B.1.177.57 | 0.000562 |
N | 13 | P13L | cCc | cTc | 2 | 2 | B.1.258.24 | 0.021505 |
N | 13 | P13L | cCc | cTc | 2 | 2 | B.1.311 | 0.000549 |
N | 13 | P13L | cCc | cTc | 2 | 2 | B.1.351.2 | 0.000605 |
N | 13 | P13L | cCc | cTc | 2 | 2 | B.1.375 | 0.001639 |
N | 13 | P13L | cCc | cTc | 2 | 2 | B.1.399 | 0.003868 |
N | 13 | P13L | cCc | cTc | 2 | 2 | B.1.416 | 0.002538 |
N | 13 | P13L | cCc | cTc | 2 | 2 | B.1.466.2 | 0.000782 |
N | 13 | P13L | cCc | cTc | 2 | 2 | B.1.523 | 0.004902 |
N | 13 | P13L | cCc | cTc | 2 | 2 | B.1.524 | 0.002813 |
N | 13 | P13L | cCc | cTc | 2 | 2 | B.1.558 | 0.009132 |
N | 13 | P13L | cCc | cTc | 2 | 2 | B.1.605 | 0.011905 |
N | 13 | P13L | cCc | cTc | 2 | 2 | B.39 | 0.004662 |
N | 13 | P13L | cCc | cTc | 2 | 2 | C.1 | 0.004785 |
N | 13 | P13L | cCc | cTc | 2 | 2 | C.14 | 0.008658 |
N | 13 | P13L | cCc | cTc | 2 | 2 | C.39 | 0.037736 |
N | 13 | P13L | cCc | cTc | 2 | 2 | N.3 | 0.011628 |
N | 13 | P13L | cCc | cTc | 2 | 2 | P.1.7 | 0.000639 |
N | 13 | P13L | cCc | cTc | 2 | 2 | P.3 | 0.00319 |
N | 13 | P13L | cCc | cTc | 2 | 2 | Q.1 | 0.000253 |
N | 13 | P13L | cCc | cTc | 2 | 2 | Q.8 | 0.00033 |
N | 13 | P13L | cCc | cTc | 1 | 1 | A.2.4 | 0.003367 |
N | 13 | P13L | cCc | cTc | 1 | 1 | A.2.5 | 0.000499 |
N | 13 | P13L | cCc | cTc | 1 | 1 | A.28 | 0.002646 |
N | 13 | P13L | cCc | cTc | 1 | 1 | A.30 | 0.142857 |
N | 13 | P13L | cCc | cTc | 1 | 1 | AD.2 | 0.000219 |
N | 13 | P13L | cCc | cTc | 1 | 1 | AM.4 | 0.003571 |
N | 13 | P13L | cCc | cTc | 1 | 1 | AY.105 | 0.000643 |
N | 13 | P13L | cCc | cTc | 1 | 1 | AY.113 | 0.000142 |
N | 13 | P13L | cCc | cTc | 1 | 1 | AY.116 | 0.000287 |
N | 13 | P13L | cCc | cTc | 1 | 1 | AY.116.1 | 0.000311 |
N | 13 | P13L | cCc | cTc | 1 | 1 | AY.118 | 0.000063 |
N | 13 | P13L | cCc | cTc | 1 | 1 | AY.13 | 0.000161 |
N | 13 | P13L | cCc | cTc | 1 | 1 | AY.32 | 0.000532 |
N | 13 | P13L | cCc | cTc | 1 | 1 | AY.34 | 0.000097 |
N | 13 | P13L | cCc | cTc | 1 | 1 | AY.46 | 0.000104 |
N | 13 | P13L | cCc | cTc | 1 | 1 | AY.5.3 | 0.000337 |
N | 13 | P13L | cCc | cTc | 1 | 1 | AY.53 | 0.000288 |
N | 13 | P13L | cCc | cTc | 1 | 1 | AY.60 | 0.000938 |
N | 13 | P13L | cCc | cTc | 1 | 1 | AY.72 | 0.001361 |
N | 13 | P13L | cCc | cTc | 1 | 1 | AY.74 | 0.000116 |
N | 13 | P13L | cCc | cTc | 1 | 1 | AY.92 | 0.000287 |
N | 13 | P13L | cCc | cTc | 1 | 1 | AY.93 | 0.000273 |
N | 13 | P13L | cCc | cTc | 1 | 1 | AY.99.2 | 0.000092 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.1.121 | 0.002427 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.1.141 | 0.002012 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.1.161 | 0.003534 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.1.192 | 0.002309 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.1.231 | 0.003096 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.1.232 | 0.001815 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.1.241 | 0.00207 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.1.243 | 0.004082 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.1.244 | 0.015385 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.1.256 | 0.013699 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.1.263 | 0.001558 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.1.265 | 0.003155 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.1.294 | 0.001266 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.1.306 | 0.000438 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.1.325 | 0.025641 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.1.337 | 0.003597 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.1.348 | 0.000796 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.1.39 | 0.00051 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.1.409 | 0.002833 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.1.411 | 0.014706 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.1.431 | 0.016129 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.1.441 | 0.05 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.1.448 | 0.002033 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.1.46 | 0.004367 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.1.50 | 0.000679 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.1.521 | 0.005348 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.1.524 | 0.020833 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.1.74 | 0.00431 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.1.88 | 0.071429 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.12 | 0.008 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.142 | 0.002899 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.147 | 0.000756 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.177.12 | 0.000152 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.177.60 | 0.000218 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.177.83 | 0.001481 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.214 | 0.003663 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.221.2 | 0.004016 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.232 | 0.000537 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.240 | 0.000216 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.247 | 0.014925 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.258.16 | 0.001637 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.260 | 0.003344 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.301 | 0.005917 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.305 | 0.002151 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.328 | 0.03125 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.343 | 0.020833 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.346 | 0.001311 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.349 | 0.000715 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.351.5 | 0.0006 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.36.36 | 0.000602 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.36.8 | 0.001 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.361 | 0.001289 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.367 | 0.000792 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.404 | 0.001302 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.409 | 0.000781 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.459 | 0.004082 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.462 | 0.007246 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.474 | 0.001901 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.493 | 0.025641 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.497 | 0.000315 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.499 | 0.00105 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.525 | 0.000113 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.530 | 0.007143 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.560 | 0.00463 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.561 | 0.000397 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.564 | 0.000426 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.568 | 0.001111 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.574 | 0.002151 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.595 | 0.000261 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.600 | 0.005848 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.620 | 0.000946 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.638 | 0.052632 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.78 | 0.008547 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.8 | 0.001972 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.81 | 0.021277 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.38 | 0.02381 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.4 | 0.002208 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.40 | 0.000364 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.55 | 0.00295 |
N | 13 | P13L | cCc | cTc | 1 | 1 | C.35 | 0.000774 |
N | 13 | P13L | cCc | cTc | 1 | 1 | P.1.13 | 0.000898 |
N | 13 | P13L | cCc | cTc | 1 | 1 | P.2 | 0.000187 |
N | 13 | P13L | cCc | cTc | 1 | 1 | W.3 | 0.005263 |
![]() |
![]() |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|