CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : Mut = N354N

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N354N354NsynaaTaaC782782129333-29335

Details of the mutation N354N within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N354N354NaaTaaC782782All0.00015
N354N354NaaTaaC225225AY.40.00035
N354N354NaaTaaC208208AY.330.01389
N354N354NaaTaaC6060B.1.36.80.06
N354N354NaaTaaC4242AY.430.000186
N354N354NaaTaaC4040B.1.1.70.000036
N354N354NaaTaaC2323AY.50.000475
N354N354NaaTaaC2222B.1.617.20.000083
N354N354NaaTaaC1313B.1.1840.764706
N354N354NaaTaaC88AY.30.00008
N354N354NaaTaaC88B.1.1600.00025
N354N354NaaTaaC77B.1.4090.005469
N354N354NaaTaaC66AY.1020.000159
N354N354NaaTaaC66AY.440.000037
N354N354NaaTaaC55AY.270.000324
N354N354NaaTaaC55AY.290.000079
N354N354NaaTaaC55B.1.5610.001985
N354N354NaaTaaC44AY.100.00212
N354N354NaaTaaC44AY.1030.000025
N354N354NaaTaaC44AY.920.001149
N354N354NaaTaaC44B.10.000037
N354N354NaaTaaC33AY.230.000209
N354N354NaaTaaC33AY.250.000018
N354N354NaaTaaC33B.1.1770.00004
N354N354NaaTaaC33B.1.177.570.000843
N354N354NaaTaaC33B.1.360.000438
N354N354NaaTaaC33D.20.000225
N354N354NaaTaaC33P.10.000047
N354N354NaaTaaC22AY.10.000791
N354N354NaaTaaC22AY.260.000057
N354N354NaaTaaC22AY.29.10.000441
N354N354NaaTaaC22AY.46.40.000329
N354N354NaaTaaC22AY.470.000062
N354N354NaaTaaC22AY.530.000575
N354N354NaaTaaC22AY.750.000112
N354N354NaaTaaC22AY.980.000158
N354N354NaaTaaC22B.1.10.000036
N354N354NaaTaaC22B.1.1.5190.000079
N354N354NaaTaaC22B.1.2580.000133
N354N354NaaTaaC22B.1.4560.006536
N354N354NaaTaaC22L.30.007092
N354N354NaaTaaC22P.1.140.000096
N354N354NaaTaaC11AY.1060.000335
N354N354NaaTaaC11AY.1190.000035
N354N354NaaTaaC11AY.34.10.00051
N354N354NaaTaaC11AY.390.000025
N354N354NaaTaaC11AY.610.000105
N354N354NaaTaaC11AY.880.000884
N354N354NaaTaaC11AY.950.000761
N354N354NaaTaaC11AY.99.20.000092
N354N354NaaTaaC11B0.000128
N354N354NaaTaaC11B.1.1.2220.000204
N354N354NaaTaaC11B.1.1.280.000311
N354N354NaaTaaC11B.1.1.2840.000107
N354N354NaaTaaC11B.1.1.3110.000358
N354N354NaaTaaC11B.1.1.370.000193
N354N354NaaTaaC11B.1.1390.000733
N354N354NaaTaaC11B.1.177.40.000211
N354N354NaaTaaC11B.1.177.70.000165
N354N354NaaTaaC11B.1.20.000009
N354N354NaaTaaC11B.1.2210.000071
N354N354NaaTaaC11B.1.2400.000216
N354N354NaaTaaC11B.1.3240.001605
N354N354NaaTaaC11B.1.3510.00003
N354N354NaaTaaC11B.1.351.30.000876
N354N354NaaTaaC11B.1.36.160.001425
N354N354NaaTaaC11B.1.36.170.000494
N354N354NaaTaaC11B.1.36.190.009259
N354N354NaaTaaC11B.1.36.290.000517
N354N354NaaTaaC11B.1.4280.00102
N354N354NaaTaaC11B.1.4290.000024
N354N354NaaTaaC11B.1.438.10.000107
N354N354NaaTaaC11B.1.5240.001406
N354N354NaaTaaC11B.1.5670.003333
N354N354NaaTaaC11B.1.619.10.000641
N354N354NaaTaaC11N.100.029412

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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