CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : Mut = N228del

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N228N228deldelAAC---3131128955-28957

Details of the mutation N228del within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N228N228delAAC---3131All0.000006
N228N228delAAC---66B.10.000055
N228N228delAAC---44B.1.1.70.000004
N228N228delAAC---22AY.430.000009
N228N228delAAC---22AY.500.001599
N228N228delAAC---22B.1.20.000018
N228N228delAAC---22B.1.3510.000059
N228N228delAAC---22B.1.6270.00404
N228N228delAAC---11AY.250.000006
N228N228delAAC---11AY.400.000964
N228N228delAAC---11AY.750.000056
N228N228delAAC---11B.1.1.1390.022727
N228N228delAAC---11B.1.2600.003344
N228N228delAAC---11B.1.4390.005917
N228N228delAAC---11B.1.5250.000113
N228N228delAAC---11B.1.5960.000087
N228N228delAAC---11B.1.617.10.000129
N228N228delAAC---11B.1.617.20.000004
N228N228delAAC---11C.37.10.002618

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.