CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
N | 210 | M210del | del | ATG | --- | 1463 | 1463 | 1 | 28901-28903 |
Details of the mutation M210del within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
N | 210 | M210del | ATG | --- | 1463 | 1463 | All | 0.00028 |
N | 210 | M210del | ATG | --- | 562 | 562 | B.1.1.7 | 0.000503 |
N | 210 | M210del | ATG | --- | 202 | 202 | AY.4 | 0.000314 |
N | 210 | M210del | ATG | --- | 82 | 82 | AY.103 | 0.000509 |
N | 210 | M210del | ATG | --- | 58 | 58 | D.2 | 0.004352 |
N | 210 | M210del | ATG | --- | 49 | 49 | B.1.2 | 0.000431 |
N | 210 | M210del | ATG | --- | 46 | 46 | B.1.1 | 0.000834 |
N | 210 | M210del | ATG | --- | 42 | 42 | AY.4.2 | 0.000911 |
N | 210 | M210del | ATG | --- | 40 | 40 | AY.118 | 0.002506 |
N | 210 | M210del | ATG | --- | 32 | 32 | B.1.617.2 | 0.00012 |
N | 210 | M210del | ATG | --- | 31 | 31 | AY.43 | 0.000137 |
N | 210 | M210del | ATG | --- | 30 | 30 | B.1.1.370 | 0.379747 |
N | 210 | M210del | ATG | --- | 27 | 27 | AY.25 | 0.000162 |
N | 210 | M210del | ATG | --- | 27 | 27 | AY.99.2 | 0.002488 |
N | 210 | M210del | ATG | --- | 22 | 22 | AY.3 | 0.000219 |
N | 210 | M210del | ATG | --- | 21 | 21 | AY.44 | 0.000128 |
N | 210 | M210del | ATG | --- | 18 | 18 | AY.120 | 0.000669 |
N | 210 | M210del | ATG | --- | 16 | 16 | B.1.1.519 | 0.000635 |
N | 210 | M210del | ATG | --- | 12 | 12 | B.1 | 0.00011 |
N | 210 | M210del | ATG | --- | 10 | 10 | AY.39 | 0.000247 |
N | 210 | M210del | ATG | --- | 7 | 7 | AY.21 | 0.013283 |
N | 210 | M210del | ATG | --- | 6 | 6 | AY.100 | 0.000276 |
N | 210 | M210del | ATG | --- | 6 | 6 | AY.102 | 0.000159 |
N | 210 | M210del | ATG | --- | 6 | 6 | Q.8 | 0.000989 |
N | 210 | M210del | ATG | --- | 5 | 5 | AY.20 | 0.000194 |
N | 210 | M210del | ATG | --- | 5 | 5 | B.1.177 | 0.000066 |
N | 210 | M210del | ATG | --- | 4 | 4 | AY.101 | 0.001962 |
N | 210 | M210del | ATG | --- | 4 | 4 | AY.117 | 0.000338 |
N | 210 | M210del | ATG | --- | 4 | 4 | AY.5 | 0.000083 |
N | 210 | M210del | ATG | --- | 3 | 3 | B.1.1.117 | 0.029126 |
N | 210 | M210del | ATG | --- | 3 | 3 | B.1.1.170 | 0.003741 |
N | 210 | M210del | ATG | --- | 3 | 3 | Q.1 | 0.000379 |
N | 210 | M210del | ATG | --- | 2 | 2 | AE.8 | 0.000978 |
N | 210 | M210del | ATG | --- | 2 | 2 | AY.26 | 0.000057 |
N | 210 | M210del | ATG | --- | 2 | 2 | AY.33 | 0.000134 |
N | 210 | M210del | ATG | --- | 2 | 2 | AY.40 | 0.001929 |
N | 210 | M210del | ATG | --- | 2 | 2 | AY.50 | 0.001599 |
N | 210 | M210del | ATG | --- | 2 | 2 | B.1.1.291 | 0.001485 |
N | 210 | M210del | ATG | --- | 2 | 2 | B.1.1.307 | 0.005063 |
N | 210 | M210del | ATG | --- | 2 | 2 | B.1.1.432 | 0.002532 |
N | 210 | M210del | ATG | --- | 2 | 2 | B.1.160 | 0.000062 |
N | 210 | M210del | ATG | --- | 2 | 2 | B.1.351 | 0.000059 |
N | 210 | M210del | ATG | --- | 2 | 2 | B.1.470 | 0.002809 |
N | 210 | M210del | ATG | --- | 2 | 2 | B.1.517 | 0.000854 |
N | 210 | M210del | ATG | --- | 2 | 2 | B.1.596 | 0.000174 |
N | 210 | M210del | ATG | --- | 2 | 2 | P.1.14 | 0.000096 |
N | 210 | M210del | ATG | --- | 2 | 2 | P.2 | 0.000373 |
N | 210 | M210del | ATG | --- | 1 | 1 | AY.110 | 0.000113 |
N | 210 | M210del | ATG | --- | 1 | 1 | AY.116 | 0.000287 |
N | 210 | M210del | ATG | --- | 1 | 1 | AY.120.2 | 0.001285 |
N | 210 | M210del | ATG | --- | 1 | 1 | AY.121 | 0.000135 |
N | 210 | M210del | ATG | --- | 1 | 1 | AY.16.1 | 0.00047 |
N | 210 | M210del | ATG | --- | 1 | 1 | AY.23 | 0.00007 |
N | 210 | M210del | ATG | --- | 1 | 1 | AY.29 | 0.000016 |
N | 210 | M210del | ATG | --- | 1 | 1 | AY.29.1 | 0.000221 |
N | 210 | M210del | ATG | --- | 1 | 1 | AY.34 | 0.000097 |
N | 210 | M210del | ATG | --- | 1 | 1 | AY.4.2.1 | 0.000149 |
N | 210 | M210del | ATG | --- | 1 | 1 | AY.41 | 0.000294 |
N | 210 | M210del | ATG | --- | 1 | 1 | AY.42 | 0.00004 |
N | 210 | M210del | ATG | --- | 1 | 1 | AY.45 | 0.000122 |
N | 210 | M210del | ATG | --- | 1 | 1 | AY.46 | 0.000104 |
N | 210 | M210del | ATG | --- | 1 | 1 | AY.46.6 | 0.000072 |
N | 210 | M210del | ATG | --- | 1 | 1 | AY.6 | 0.000041 |
N | 210 | M210del | ATG | --- | 1 | 1 | AY.61 | 0.000105 |
N | 210 | M210del | ATG | --- | 1 | 1 | AY.70 | 0.000209 |
N | 210 | M210del | ATG | --- | 1 | 1 | AY.75 | 0.000056 |
N | 210 | M210del | ATG | --- | 1 | 1 | AY.9.2 | 0.000037 |
N | 210 | M210del | ATG | --- | 1 | 1 | AY.98 | 0.000079 |
N | 210 | M210del | ATG | --- | 1 | 1 | B | 0.000128 |
N | 210 | M210del | ATG | --- | 1 | 1 | B.1.1.1 | 0.000327 |
N | 210 | M210del | ATG | --- | 1 | 1 | B.1.1.189 | 0.001513 |
N | 210 | M210del | ATG | --- | 1 | 1 | B.1.1.214 | 0.000055 |
N | 210 | M210del | ATG | --- | 1 | 1 | B.1.1.222 | 0.000204 |
N | 210 | M210del | ATG | --- | 1 | 1 | B.1.1.270 | 0.010309 |
N | 210 | M210del | ATG | --- | 1 | 1 | B.1.1.28 | 0.000311 |
N | 210 | M210del | ATG | --- | 1 | 1 | B.1.1.301 | 0.001179 |
N | 210 | M210del | ATG | --- | 1 | 1 | B.1.1.303 | 0.002762 |
N | 210 | M210del | ATG | --- | 1 | 1 | B.1.1.312 | 0.001912 |
N | 210 | M210del | ATG | --- | 1 | 1 | B.1.1.33 | 0.000421 |
N | 210 | M210del | ATG | --- | 1 | 1 | B.1.1.413 | 0.006897 |
N | 210 | M210del | ATG | --- | 1 | 1 | B.1.1.50 | 0.000679 |
N | 210 | M210del | ATG | --- | 1 | 1 | B.1.36.31 | 0.001751 |
N | 210 | M210del | ATG | --- | 1 | 1 | B.1.465 | 0.003802 |
N | 210 | M210del | ATG | --- | 1 | 1 | B.1.525 | 0.000113 |
N | 210 | M210del | ATG | --- | 1 | 1 | B.1.576 | 0.000907 |
N | 210 | M210del | ATG | --- | 1 | 1 | B.1.580 | 0.004065 |
N | 210 | M210del | ATG | --- | 1 | 1 | B.1.617.1 | 0.000129 |
N | 210 | M210del | ATG | --- | 1 | 1 | C.1 | 0.002392 |
N | 210 | M210del | ATG | --- | 1 | 1 | C.26 | 0.007353 |
N | 210 | M210del | ATG | --- | 1 | 1 | C.36.3 | 0.000567 |
N | 210 | M210del | ATG | --- | 1 | 1 | C.37.1 | 0.002618 |
N | 210 | M210del | ATG | --- | 1 | 1 | N.3 | 0.005814 |
N | 210 | M210del | ATG | --- | 1 | 1 | N.5 | 0.001767 |
N | 210 | M210del | ATG | --- | 1 | 1 | P.1 | 0.000016 |
N | 210 | M210del | ATG | --- | 1 | 1 | P.1.1 | 0.000318 |
N | 210 | M210del | ATG | --- | 1 | 1 | P.1.7 | 0.000319 |
N | 210 | M210del | ATG | --- | 1 | 1 | Q.3 | 0.000145 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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