CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : Mut = M210T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N210M210TnonsynaTgaCg6146120.99674328901-28903
N210M210TnonsynaTGaCC61420.0032573328901-28903

Details of the mutation M210T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N210M210TaTgaCg612614All0.000117
N210M210TaTGaCC2614All0
N210M210TaTgaCg122122B.1.1.70.000109
N210M210TaTgaCg8181AY.46.60.005849
N210M210TaTgaCg6464B.1.1.3740.152019
N210M210TaTgaCg3333AY.330.002204
N210M210TaTgaCg2830B.10.000256
N210M210TaTGaCC230B.10.000018
N210M210TaTgaCg2525AY.30.000249
N210M210TaTgaCg2121Q.30.003046
N210M210TaTgaCg1919AY.40.00003
N210M210TaTgaCg1717AY.390.00042
N210M210TaTgaCg1616B.1.20.000141
N210M210TaTgaCg1515AY.1030.000093
N210M210TaTgaCg1515B.1.1770.000198
N210M210TaTgaCg1313B.1.6370.00095
N210M210TaTgaCg1111AY.430.000049
N210M210TaTgaCg1010AY.1020.000265
N210M210TaTgaCg1010B.1.617.20.000038
N210M210TaTgaCg77AY.250.000042
N210M210TaTgaCg77B.1.4270.000353
N210M210TaTgaCg66AY.440.000037
N210M210TaTgaCg66AY.740.000694
N210M210TaTgaCg55B.1.10.000091
N210M210TaTgaCg55B.1.6210.000443
N210M210TaTgaCg44B.1.177.210.000306
N210M210TaTgaCg44B.1.3560.006908
N210M210TaTgaCg33AY.1190.000106
N210M210TaTgaCg33AY.420.000121
N210M210TaTgaCg33AY.550.002752
N210M210TaTgaCg33AY.98.10.000145
N210M210TaTgaCg33B.1.177.330.004934
N210M210TaTgaCg22AY.1200.000074
N210M210TaTgaCg22AY.1210.000271
N210M210TaTgaCg22AY.320.001065
N210M210TaTgaCg22AY.450.000243
N210M210TaTgaCg22AY.460.000208
N210M210TaTgaCg22AY.5.40.000553
N210M210TaTgaCg22B.1.1.5190.000079
N210M210TaTgaCg22B.1.177.600.000437
N210M210TaTgaCg22B.1.360.000292
N210M210TaTgaCg22B.1.5260.000047
N210M210TaTgaCg22P.10.000032
N210M210TaTgaCg11A0.000387
N210M210TaTgaCg11A.2.50.000499
N210M210TaTgaCg11A.250.018182
N210M210TaTgaCg11AY.1080.001103
N210M210TaTgaCg11AY.1180.000063
N210M210TaTgaCg11AY.200.000039
N210M210TaTgaCg11AY.290.000016
N210M210TaTgaCg11AY.3.10.000085
N210M210TaTgaCg11AY.350.000233
N210M210TaTgaCg11AY.360.000148
N210M210TaTgaCg11AY.4.20.000022
N210M210TaTgaCg11AY.470.000031
N210M210TaTgaCg11AY.50.000021
N210M210TaTgaCg11AY.500.000799
N210M210TaTgaCg11AY.610.000105
N210M210TaTgaCg11B.1.1.1610.003534
N210M210TaTgaCg11B.1.1.2220.000204
N210M210TaTgaCg11B.1.1.4090.002833
N210M210TaTgaCg11B.1.177.270.009434
N210M210TaTgaCg11B.1.2060.000816
N210M210TaTgaCg11B.1.2430.00007
N210M210TaTgaCg11B.1.2580.000067
N210M210TaTgaCg11B.1.2600.003344
N210M210TaTgaCg11B.1.351.30.000876
N210M210TaTgaCg11B.1.4290.000024
N210M210TaTgaCg11B.1.5150.014493
N210M210TaTgaCg11B.1.617.10.000129
N210M210TaTgaCg11B.1.6280.000352
N210M210TaTgaCg11B.310.003731
N210M210TaTgaCg11C.370.000116
N210M210TaTgaCg11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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