CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : Mut = L161L

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N161L161LsynctTctC6996100.87267528754-28756
N161L161LsynctTctG699630.090128828754-28756
N161L161LsynctTctA699260.03719628754-28756

Details of the mutation L161L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N161L161LctTctC610699All0.000117
N161L161LctTctG63699All0.000012
N161L161LctTctA26699All0.000005
N161L161LctTctC202202S.11
N161L161LctTctC6161B.1.1.2170.221818
N161L161LctTctC4248B.1.1.70.000038
N161L161LctTctG548B.1.1.70.000004
N161L161LctTctA148B.1.1.70.000001
N161L161LctTctC4446B.1.617.20.000166
N161L161LctTctG246B.1.617.20.000008
N161L161LctTctC4343AY.660.045989
N161L161LctTctC3742AY.40.000058
N161L161LctTctA442AY.40.000006
N161L161LctTctG142AY.40.000002
N161L161LctTctG3232B.1.1.2840.003437
N161L161LctTctC2323AY.360.003409
N161L161LctTctC2323B.1.20.000203
N161L161LctTctC1919B.1.2430.001322
N161L161LctTctC1316AY.440.000079
N161L161LctTctG316AY.440.000018
N161L161LctTctC1215B.1.10.000218
N161L161LctTctG315B.1.10.000054
N161L161LctTctC914AY.260.000255
N161L161LctTctG514AY.260.000142
N161L161LctTctA1212B.1.1.3110.004298
N161L161LctTctC1111AY.290.000174
N161L161LctTctA67B0.000767
N161L161LctTctG17B0.000128
N161L161LctTctC66AY.39.10.000238
N161L161LctTctC55B.1.1.4200.00503
N161L161LctTctG44AY.30.00004
N161L161LctTctC44B.10.000037
N161L161LctTctC44B.1.2210.000284
N161L161LctTctC44B.1.5960.000349
N161L161LctTctC33AY.1020.00008
N161L161LctTctC33AY.1050.001929
N161L161LctTctG33AY.570.001969
N161L161LctTctC33AY.98.10.000145
N161L161LctTctC33B.1.1770.00004
N161L161LctTctC23B.1.3510.000059
N161L161LctTctA13B.1.3510.00003
N161L161LctTctC33B.1.4270.000151
N161L161LctTctC22AY.1200.000074
N161L161LctTctC22AY.390.000049
N161L161LctTctC22AY.430.000009
N161L161LctTctC22AY.980.000158
N161L161LctTctG22B.1.1600.000062
N161L161LctTctC22B.1.6370.000146
N161L161LctTctC22P.10.000032
N161L161LctTctC11AY.1030.000006
N161L161LctTctC11AY.1130.000142
N161L161LctTctC11AY.1180.000063
N161L161LctTctC11AY.140.000088
N161L161LctTctC11AY.200.000039
N161L161LctTctC11AY.250.000006
N161L161LctTctC11AY.420.00004
N161L161LctTctC11AY.460.000104
N161L161LctTctC11AY.50.000021
N161L161LctTctC11AY.530.000288
N161L161LctTctG11B.1.1.3740.002375
N161L161LctTctC11B.1.1.4660.008696
N161L161LctTctC11B.1.1.540.003021
N161L161LctTctG11B.1.160.80.001289
N161L161LctTctA11B.1.177.150.000631
N161L161LctTctC11B.1.2790.000514
N161L161LctTctC11B.1.3380.008621
N161L161LctTctA11B.1.4220.000812
N161L161LctTctC11B.1.4530.003236
N161L161LctTctC11B.1.5260.000024
N161L161LctTctC11C.350.000774
N161L161LctTctC11P.1.140.000048
N161L161LctTctC11Q.20.000613

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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