CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
N | 139 | L139F | nonsyn | ttG | ttT | 20998 | 13153 | 0.626393 | 28688-28690 | |
N | 139 | L139F | nonsyn | ttG | ttC | 20998 | 7845 | 0.373607 | 28688-28690 |
Details of the mutation L139F within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
N | 139 | L139F | ttG | ttT | 13153 | 20998 | All | 0.002516 |
N | 139 | L139F | ttG | ttC | 7845 | 20998 | All | 0.0015 |
N | 139 | L139F | ttG | ttC | 7609 | 8315 | B.1.1.7 | 0.006812 |
N | 139 | L139F | ttG | ttT | 706 | 8315 | B.1.1.7 | 0.000632 |
N | 139 | L139F | ttG | ttT | 2927 | 2932 | AY.4 | 0.004556 |
N | 139 | L139F | ttG | ttC | 5 | 2932 | AY.4 | 0.000008 |
N | 139 | L139F | ttG | ttT | 2411 | 2411 | AY.30 | 0.954096 |
N | 139 | L139F | ttG | ttT | 2162 | 2165 | B.1.617.2 | 0.008141 |
N | 139 | L139F | ttG | ttC | 3 | 2165 | B.1.617.2 | 0.000011 |
N | 139 | L139F | ttG | ttT | 631 | 631 | AY.40 | 0.608486 |
N | 139 | L139F | ttG | ttT | 511 | 514 | B.1.177 | 0.006729 |
N | 139 | L139F | ttG | ttC | 3 | 514 | B.1.177 | 0.00004 |
N | 139 | L139F | ttG | ttT | 505 | 505 | B.1.375 | 0.413934 |
N | 139 | L139F | ttG | ttT | 221 | 241 | B.1 | 0.002024 |
N | 139 | L139F | ttG | ttC | 20 | 241 | B.1 | 0.000183 |
N | 139 | L139F | ttG | ttT | 221 | 227 | AY.44 | 0.001345 |
N | 139 | L139F | ttG | ttC | 6 | 227 | AY.44 | 0.000037 |
N | 139 | L139F | ttG | ttT | 210 | 212 | AY.102 | 0.005568 |
N | 139 | L139F | ttG | ttC | 2 | 212 | AY.102 | 0.000053 |
N | 139 | L139F | ttG | ttT | 203 | 204 | AY.43 | 0.000899 |
N | 139 | L139F | ttG | ttC | 1 | 204 | AY.43 | 0.000004 |
N | 139 | L139F | ttG | ttT | 151 | 151 | AY.9 | 0.010207 |
N | 139 | L139F | ttG | ttT | 87 | 135 | B.1.1 | 0.001578 |
N | 139 | L139F | ttG | ttC | 48 | 135 | B.1.1 | 0.000871 |
N | 139 | L139F | ttG | ttT | 102 | 110 | AY.25 | 0.000614 |
N | 139 | L139F | ttG | ttC | 8 | 110 | AY.25 | 0.000048 |
N | 139 | L139F | ttG | ttT | 99 | 99 | B.1.441 | 0.951923 |
N | 139 | L139F | ttG | ttT | 98 | 98 | B.1.36 | 0.014298 |
N | 139 | L139F | ttG | ttT | 89 | 90 | AY.3 | 0.000885 |
N | 139 | L139F | ttG | ttC | 1 | 90 | AY.3 | 0.00001 |
N | 139 | L139F | ttG | ttT | 87 | 88 | B.1.429 | 0.002047 |
N | 139 | L139F | ttG | ttC | 1 | 88 | B.1.429 | 0.000024 |
N | 139 | L139F | ttG | ttT | 85 | 85 | B.1.177.21 | 0.0065 |
N | 139 | L139F | ttG | ttT | 62 | 77 | B.1.160 | 0.001934 |
N | 139 | L139F | ttG | ttC | 15 | 77 | B.1.160 | 0.000468 |
N | 139 | L139F | ttG | ttT | 55 | 60 | AY.103 | 0.000341 |
N | 139 | L139F | ttG | ttC | 5 | 60 | AY.103 | 0.000031 |
N | 139 | L139F | ttG | ttT | 54 | 60 | B.1.351 | 0.001605 |
N | 139 | L139F | ttG | ttC | 6 | 60 | B.1.351 | 0.000178 |
N | 139 | L139F | ttG | ttT | 55 | 58 | B.1.2 | 0.000484 |
N | 139 | L139F | ttG | ttC | 3 | 58 | B.1.2 | 0.000026 |
N | 139 | L139F | ttG | ttT | 55 | 55 | AY.46.6 | 0.003971 |
N | 139 | L139F | ttG | ttT | 53 | 53 | B.1.223 | 0.147222 |
N | 139 | L139F | ttG | ttT | 44 | 44 | B.1.1.519 | 0.001747 |
N | 139 | L139F | ttG | ttT | 41 | 42 | AY.29 | 0.000647 |
N | 139 | L139F | ttG | ttC | 1 | 42 | AY.29 | 0.000016 |
N | 139 | L139F | ttG | ttT | 39 | 40 | B.1.1.318 | 0.011768 |
N | 139 | L139F | ttG | ttC | 1 | 40 | B.1.1.318 | 0.000302 |
N | 139 | L139F | ttG | ttT | 37 | 37 | B.1.243 | 0.002575 |
N | 139 | L139F | ttG | ttC | 33 | 36 | Q.1 | 0.004169 |
N | 139 | L139F | ttG | ttT | 3 | 36 | Q.1 | 0.000379 |
N | 139 | L139F | ttG | ttT | 33 | 33 | B.1.551 | 0.042581 |
N | 139 | L139F | ttG | ttT | 31 | 31 | AY.39 | 0.000766 |
N | 139 | L139F | ttG | ttT | 29 | 30 | AY.4.2 | 0.000629 |
N | 139 | L139F | ttG | ttC | 1 | 30 | AY.4.2 | 0.000022 |
N | 139 | L139F | ttG | ttT | 29 | 29 | B.1.565 | 0.023501 |
N | 139 | L139F | ttG | ttT | 28 | 28 | AY.100 | 0.001288 |
N | 139 | L139F | ttG | ttT | 27 | 27 | AY.16.1 | 0.012688 |
N | 139 | L139F | ttG | ttT | 27 | 27 | AY.59 | 0.014301 |
N | 139 | L139F | ttG | ttT | 27 | 27 | AY.69 | 0.00504 |
N | 139 | L139F | ttG | ttT | 25 | 25 | B.1.1.117 | 0.242718 |
N | 139 | L139F | ttG | ttT | 24 | 24 | B.1.241 | 0.019481 |
N | 139 | L139F | ttG | ttT | 23 | 23 | AY.20 | 0.000894 |
N | 139 | L139F | ttG | ttT | 18 | 22 | B.1.526 | 0.000423 |
N | 139 | L139F | ttG | ttC | 4 | 22 | B.1.526 | 0.000094 |
N | 139 | L139F | ttG | ttT | 11 | 20 | AY.9.2 | 0.000404 |
N | 139 | L139F | ttG | ttC | 9 | 20 | AY.9.2 | 0.000331 |
N | 139 | L139F | ttG | ttT | 18 | 19 | AY.5 | 0.000372 |
N | 139 | L139F | ttG | ttC | 1 | 19 | AY.5 | 0.000021 |
N | 139 | L139F | ttG | ttT | 19 | 19 | B.1.189 | 0.081545 |
N | 139 | L139F | ttG | ttT | 17 | 17 | AY.26 | 0.000481 |
N | 139 | L139F | ttG | ttT | 17 | 17 | AY.67 | 0.007892 |
N | 139 | L139F | ttG | ttT | 17 | 17 | B.1.617.1 | 0.002192 |
N | 139 | L139F | ttG | ttT | 16 | 16 | A.2.5 | 0.007984 |
N | 139 | L139F | ttG | ttT | 16 | 16 | AY.116 | 0.004588 |
N | 139 | L139F | ttG | ttC | 11 | 16 | AY.46 | 0.001145 |
N | 139 | L139F | ttG | ttT | 5 | 16 | AY.46 | 0.00052 |
N | 139 | L139F | ttG | ttT | 16 | 16 | B.1.177.57 | 0.004496 |
N | 139 | L139F | ttG | ttT | 15 | 16 | B.1.221 | 0.001065 |
N | 139 | L139F | ttG | ttC | 1 | 16 | B.1.221 | 0.000071 |
N | 139 | L139F | ttG | ttT | 15 | 15 | AY.65 | 0.007996 |
N | 139 | L139F | ttG | ttT | 15 | 15 | AY.93 | 0.004096 |
N | 139 | L139F | ttG | ttT | 15 | 15 | B.1.1.518 | 0.094937 |
N | 139 | L139F | ttG | ttT | 14 | 14 | AY.113 | 0.001993 |
N | 139 | L139F | ttG | ttT | 14 | 14 | AY.45 | 0.001704 |
N | 139 | L139F | ttG | ttT | 13 | 13 | AY.98 | 0.001027 |
N | 139 | L139F | ttG | ttT | 12 | 12 | AY.4.5 | 0.00129 |
N | 139 | L139F | ttG | ttT | 11 | 11 | AY.85 | 0.004699 |
N | 139 | L139F | ttG | ttT | 11 | 11 | B.1.1.121 | 0.026699 |
N | 139 | L139F | ttG | ttT | 11 | 11 | B.1.177.6 | 0.010742 |
N | 139 | L139F | ttG | ttT | 10 | 10 | AY.49 | 0.031949 |
N | 139 | L139F | ttG | ttT | 10 | 10 | Q.3 | 0.00145 |
N | 139 | L139F | ttG | ttT | 8 | 9 | AY.118 | 0.000501 |
N | 139 | L139F | ttG | ttC | 1 | 9 | AY.118 | 0.000063 |
N | 139 | L139F | ttG | ttT | 7 | 9 | AY.33 | 0.000467 |
N | 139 | L139F | ttG | ttC | 2 | 9 | AY.33 | 0.000134 |
N | 139 | L139F | ttG | ttT | 9 | 9 | AY.39.1 | 0.000357 |
N | 139 | L139F | ttG | ttT | 9 | 9 | AY.5.3 | 0.003036 |
N | 139 | L139F | ttG | ttT | 9 | 9 | B.1.427 | 0.000454 |
N | 139 | L139F | ttG | ttT | 6 | 9 | Q.8 | 0.000989 |
N | 139 | L139F | ttG | ttC | 3 | 9 | Q.8 | 0.000495 |
N | 139 | L139F | ttG | ttT | 8 | 8 | AY.23 | 0.000558 |
N | 139 | L139F | ttG | ttT | 8 | 8 | AY.34 | 0.000776 |
N | 139 | L139F | ttG | ttT | 8 | 8 | AY.42 | 0.000322 |
N | 139 | L139F | ttG | ttT | 8 | 8 | AY.75 | 0.000448 |
N | 139 | L139F | ttG | ttT | 7 | 8 | AY.98.1 | 0.000339 |
N | 139 | L139F | ttG | ttC | 1 | 8 | AY.98.1 | 0.000048 |
N | 139 | L139F | ttG | ttT | 6 | 8 | B.1.177.73 | 0.003398 |
N | 139 | L139F | ttG | ttC | 2 | 8 | B.1.177.73 | 0.001133 |
N | 139 | L139F | ttG | ttT | 7 | 7 | AY.117 | 0.000592 |
N | 139 | L139F | ttG | ttT | 7 | 7 | AY.119 | 0.000247 |
N | 139 | L139F | ttG | ttT | 7 | 7 | AY.2 | 0.002493 |
N | 139 | L139F | ttG | ttT | 7 | 7 | AY.6 | 0.000288 |
N | 139 | L139F | ttG | ttT | 7 | 7 | AY.75.1 | 0.001262 |
N | 139 | L139F | ttG | ttT | 7 | 7 | AY.86 | 0.005809 |
N | 139 | L139F | ttG | ttT | 7 | 7 | B.1.1.256 | 0.09589 |
N | 139 | L139F | ttG | ttT | 7 | 7 | B.1.1.420 | 0.007042 |
N | 139 | L139F | ttG | ttT | 7 | 7 | B.1.160.29 | 0.029536 |
N | 139 | L139F | ttG | ttT | 6 | 6 | AY.106 | 0.002009 |
N | 139 | L139F | ttG | ttC | 5 | 6 | AY.36 | 0.000741 |
N | 139 | L139F | ttG | ttT | 1 | 6 | AY.36 | 0.000148 |
N | 139 | L139F | ttG | ttT | 6 | 6 | AY.62 | 0.002614 |
N | 139 | L139F | ttG | ttT | 6 | 6 | AY.74 | 0.000694 |
N | 139 | L139F | ttG | ttT | 6 | 6 | AY.9.1 | 0.000502 |
N | 139 | L139F | ttG | ttT | 6 | 6 | B | 0.000767 |
N | 139 | L139F | ttG | ttT | 6 | 6 | B.1.1.157 | 0.005479 |
N | 139 | L139F | ttG | ttT | 6 | 6 | B.1.36.29 | 0.003104 |
N | 139 | L139F | ttG | ttT | 6 | 6 | B.1.361 | 0.007732 |
N | 139 | L139F | ttG | ttT | 6 | 6 | B.1.456 | 0.019608 |
N | 139 | L139F | ttG | ttT | 6 | 6 | B.1.572 | 0.15 |
N | 139 | L139F | ttG | ttT | 6 | 6 | B.1.621 | 0.000531 |
N | 139 | L139F | ttG | ttT | 6 | 6 | C.37 | 0.000696 |
N | 139 | L139F | ttG | ttT | 4 | 5 | AY.120 | 0.000149 |
N | 139 | L139F | ttG | ttC | 1 | 5 | AY.120 | 0.000037 |
N | 139 | L139F | ttG | ttT | 5 | 5 | AY.47 | 0.000156 |
N | 139 | L139F | ttG | ttT | 4 | 5 | AY.61 | 0.000419 |
N | 139 | L139F | ttG | ttC | 1 | 5 | AY.61 | 0.000105 |
N | 139 | L139F | ttG | ttT | 5 | 5 | AY.68 | 0.001369 |
N | 139 | L139F | ttG | ttT | 5 | 5 | B.1.1.198 | 0.007342 |
N | 139 | L139F | ttG | ttT | 5 | 5 | B.1.177.12 | 0.000758 |
N | 139 | L139F | ttG | ttT | 5 | 5 | B.1.177.82 | 0.002387 |
N | 139 | L139F | ttG | ttT | 5 | 5 | B.1.234 | 0.00066 |
N | 139 | L139F | ttG | ttC | 3 | 5 | B.1.525 | 0.000339 |
N | 139 | L139F | ttG | ttT | 2 | 5 | B.1.525 | 0.000226 |
N | 139 | L139F | ttG | ttT | 5 | 5 | B.1.637 | 0.000365 |
N | 139 | L139F | ttG | ttC | 4 | 5 | P.1 | 0.000063 |
N | 139 | L139F | ttG | ttT | 1 | 5 | P.1 | 0.000016 |
N | 139 | L139F | ttG | ttT | 5 | 5 | P.2 | 0.000933 |
N | 139 | L139F | ttG | ttT | 4 | 4 | AY.13 | 0.000644 |
N | 139 | L139F | ttG | ttT | 4 | 4 | AY.28 | 0.007561 |
N | 139 | L139F | ttG | ttT | 4 | 4 | AY.46.1 | 0.004107 |
N | 139 | L139F | ttG | ttT | 4 | 4 | AY.54 | 0.000381 |
N | 139 | L139F | ttG | ttC | 4 | 4 | B.1.351.2 | 0.00121 |
N | 139 | L139F | ttG | ttT | 4 | 4 | B.1.367 | 0.00317 |
N | 139 | L139F | ttG | ttT | 4 | 4 | B.1.438.1 | 0.000429 |
N | 139 | L139F | ttG | ttT | 4 | 4 | B.1.560 | 0.018519 |
N | 139 | L139F | ttG | ttT | 4 | 4 | B.1.596 | 0.000349 |
N | 139 | L139F | ttG | ttT | 4 | 4 | R.1 | 0.00036 |
N | 139 | L139F | ttG | ttT | 3 | 3 | 0.166667 | |
N | 139 | L139F | ttG | ttT | 3 | 3 | AY.10 | 0.00159 |
N | 139 | L139F | ttG | ttT | 3 | 3 | AY.14 | 0.000264 |
N | 139 | L139F | ttG | ttT | 3 | 3 | AY.16 | 0.001139 |
N | 139 | L139F | ttG | ttT | 3 | 3 | AY.3.1 | 0.000256 |
N | 139 | L139F | ttG | ttT | 3 | 3 | AY.32 | 0.001597 |
N | 139 | L139F | ttG | ttC | 2 | 3 | AY.46.4 | 0.000329 |
N | 139 | L139F | ttG | ttT | 1 | 3 | AY.46.4 | 0.000165 |
N | 139 | L139F | ttG | ttT | 3 | 3 | AY.51 | 0.002727 |
N | 139 | L139F | ttG | ttT | 3 | 3 | AY.57 | 0.001969 |
N | 139 | L139F | ttG | ttT | 3 | 3 | AY.60 | 0.002814 |
N | 139 | L139F | ttG | ttC | 2 | 3 | AY.7 | 0.000392 |
N | 139 | L139F | ttG | ttT | 1 | 3 | AY.7 | 0.000196 |
N | 139 | L139F | ttG | ttT | 3 | 3 | AY.99.2 | 0.000276 |
N | 139 | L139F | ttG | ttT | 3 | 3 | B.1.1.189 | 0.004539 |
N | 139 | L139F | ttG | ttC | 3 | 3 | B.1.1.409 | 0.008499 |
N | 139 | L139F | ttG | ttT | 3 | 3 | B.1.110.3 | 0.002155 |
N | 139 | L139F | ttG | ttT | 3 | 3 | B.1.214 | 0.010989 |
N | 139 | L139F | ttG | ttT | 3 | 3 | B.1.258 | 0.0002 |
N | 139 | L139F | ttG | ttT | 3 | 3 | B.1.416 | 0.003807 |
N | 139 | L139F | ttG | ttT | 3 | 3 | B.1.623 | 0.001609 |
N | 139 | L139F | ttG | ttT | 2 | 2 | A | 0.000774 |
N | 139 | L139F | ttG | ttT | 2 | 2 | AY.1 | 0.000791 |
N | 139 | L139F | ttG | ttT | 2 | 2 | AY.105 | 0.001286 |
N | 139 | L139F | ttG | ttT | 2 | 2 | AY.110 | 0.000225 |
N | 139 | L139F | ttG | ttT | 2 | 2 | AY.34.1 | 0.00102 |
N | 139 | L139F | ttG | ttT | 2 | 2 | AY.38 | 0.000999 |
N | 139 | L139F | ttG | ttT | 2 | 2 | AY.39.1.1 | 0.001449 |
N | 139 | L139F | ttG | ttT | 2 | 2 | AY.7.1 | 0.000225 |
N | 139 | L139F | ttG | ttC | 1 | 2 | AY.77 | 0.001127 |
N | 139 | L139F | ttG | ttT | 1 | 2 | AY.77 | 0.001127 |
N | 139 | L139F | ttG | ttT | 2 | 2 | AY.79 | 0.002421 |
N | 139 | L139F | ttG | ttT | 2 | 2 | AY.84 | 0.000875 |
N | 139 | L139F | ttG | ttT | 2 | 2 | AY.92 | 0.000575 |
N | 139 | L139F | ttG | ttT | 2 | 2 | AY.99 | 0.002099 |
N | 139 | L139F | ttG | ttT | 2 | 2 | B.1.1.222 | 0.000408 |
N | 139 | L139F | ttG | ttT | 2 | 2 | B.1.1.316 | 0.00185 |
N | 139 | L139F | ttG | ttT | 2 | 2 | B.1.1.344 | 0.021505 |
N | 139 | L139F | ttG | ttT | 2 | 2 | B.1.1.37 | 0.000386 |
N | 139 | L139F | ttG | ttT | 2 | 2 | B.1.1.424 | 0.090909 |
N | 139 | L139F | ttG | ttC | 2 | 2 | B.1.1.434 | 0.000697 |
N | 139 | L139F | ttG | ttT | 2 | 2 | B.1.177.52 | 0.003515 |
N | 139 | L139F | ttG | ttT | 2 | 2 | B.1.177.69 | 0.002967 |
N | 139 | L139F | ttG | ttT | 2 | 2 | B.1.214.2 | 0.001199 |
N | 139 | L139F | ttG | ttT | 2 | 2 | B.1.232 | 0.001075 |
N | 139 | L139F | ttG | ttT | 2 | 2 | B.1.239 | 0.002442 |
N | 139 | L139F | ttG | ttT | 2 | 2 | B.1.36.31 | 0.003503 |
N | 139 | L139F | ttG | ttT | 2 | 2 | B.1.36.38 | 0.003284 |
N | 139 | L139F | ttG | ttT | 2 | 2 | B.1.369 | 0.00057 |
N | 139 | L139F | ttG | ttT | 2 | 2 | B.1.544 | 0.012048 |
N | 139 | L139F | ttG | ttT | 2 | 2 | B.1.595 | 0.000522 |
N | 139 | L139F | ttG | ttC | 2 | 2 | P.1.14 | 0.000096 |
N | 139 | L139F | ttG | ttT | 1 | 1 | A.1 | 0.000282 |
N | 139 | L139F | ttG | ttT | 1 | 1 | A.2.5.2 | 0.001572 |
N | 139 | L139F | ttG | ttT | 1 | 1 | A.23.1 | 0.000704 |
N | 139 | L139F | ttG | ttT | 1 | 1 | A.29 | 0.005319 |
N | 139 | L139F | ttG | ttT | 1 | 1 | AY.111 | 0.000183 |
N | 139 | L139F | ttG | ttT | 1 | 1 | AY.19 | 0.00114 |
N | 139 | L139F | ttG | ttT | 1 | 1 | AY.27 | 0.000065 |
N | 139 | L139F | ttG | ttT | 1 | 1 | AY.31 | 0.018519 |
N | 139 | L139F | ttG | ttT | 1 | 1 | AY.37 | 0.000316 |
N | 139 | L139F | ttG | ttT | 1 | 1 | AY.4.4 | 0.000409 |
N | 139 | L139F | ttG | ttT | 1 | 1 | AY.41 | 0.000294 |
N | 139 | L139F | ttG | ttT | 1 | 1 | AY.46.5 | 0.000198 |
N | 139 | L139F | ttG | ttT | 1 | 1 | AY.48 | 0.000465 |
N | 139 | L139F | ttG | ttT | 1 | 1 | AY.50 | 0.000799 |
N | 139 | L139F | ttG | ttC | 1 | 1 | AY.52 | 0.000814 |
N | 139 | L139F | ttG | ttT | 1 | 1 | AY.53 | 0.000288 |
N | 139 | L139F | ttG | ttT | 1 | 1 | AY.55 | 0.000917 |
N | 139 | L139F | ttG | ttT | 1 | 1 | AY.56 | 0.001605 |
N | 139 | L139F | ttG | ttT | 1 | 1 | AY.58 | 0.000907 |
N | 139 | L139F | ttG | ttT | 1 | 1 | AY.71 | 0.000475 |
N | 139 | L139F | ttG | ttT | 1 | 1 | AY.82 | 0.001357 |
N | 139 | L139F | ttG | ttT | 1 | 1 | AY.83 | 0.001724 |
N | 139 | L139F | ttG | ttT | 1 | 1 | AY.87 | 0.000833 |
N | 139 | L139F | ttG | ttT | 1 | 1 | AY.91 | 0.00073 |
N | 139 | L139F | ttG | ttT | 1 | 1 | AZ.2 | 0.000821 |
N | 139 | L139F | ttG | ttT | 1 | 1 | B.1.1.10 | 0.001115 |
N | 139 | L139F | ttG | ttT | 1 | 1 | B.1.1.113 | 0.006993 |
N | 139 | L139F | ttG | ttT | 1 | 1 | B.1.1.120 | 0.033333 |
N | 139 | L139F | ttG | ttT | 1 | 1 | B.1.1.13 | 0.035714 |
N | 139 | L139F | ttG | ttT | 1 | 1 | B.1.1.158 | 0.012195 |
N | 139 | L139F | ttG | ttT | 1 | 1 | B.1.1.161 | 0.003534 |
N | 139 | L139F | ttG | ttT | 1 | 1 | B.1.1.186 | 0.003436 |
N | 139 | L139F | ttG | ttT | 1 | 1 | B.1.1.228 | 0.003049 |
N | 139 | L139F | ttG | ttT | 1 | 1 | B.1.1.231 | 0.003096 |
N | 139 | L139F | ttG | ttT | 1 | 1 | B.1.1.25 | 0.000569 |
N | 139 | L139F | ttG | ttC | 1 | 1 | B.1.1.28 | 0.000311 |
N | 139 | L139F | ttG | ttT | 1 | 1 | B.1.1.306 | 0.000438 |
N | 139 | L139F | ttG | ttT | 1 | 1 | B.1.1.317 | 0.000412 |
N | 139 | L139F | ttG | ttT | 1 | 1 | B.1.1.320 | 0.018182 |
N | 139 | L139F | ttG | ttT | 1 | 1 | B.1.1.33 | 0.000421 |
N | 139 | L139F | ttG | ttT | 1 | 1 | B.1.1.335 | 0.012987 |
N | 139 | L139F | ttG | ttT | 1 | 1 | B.1.1.348 | 0.000796 |
N | 139 | L139F | ttG | ttT | 1 | 1 | B.1.1.365 | 0.005587 |
N | 139 | L139F | ttG | ttT | 1 | 1 | B.1.1.371 | 0.010417 |
N | 139 | L139F | ttG | ttT | 1 | 1 | B.1.1.375 | 0.011905 |
N | 139 | L139F | ttG | ttT | 1 | 1 | B.1.1.398 | 0.003226 |
N | 139 | L139F | ttG | ttT | 1 | 1 | B.1.1.419 | 0.007407 |
N | 139 | L139F | ttG | ttC | 1 | 1 | B.1.1.464 | 0.001473 |
N | 139 | L139F | ttG | ttT | 1 | 1 | B.1.1.63 | 0.000386 |
N | 139 | L139F | ttG | ttT | 1 | 1 | B.1.106 | 0.03125 |
N | 139 | L139F | ttG | ttT | 1 | 1 | B.1.110 | 0.004525 |
N | 139 | L139F | ttG | ttT | 1 | 1 | B.1.111 | 0.001175 |
N | 139 | L139F | ttG | ttT | 1 | 1 | B.1.115 | 0.021739 |
N | 139 | L139F | ttG | ttT | 1 | 1 | B.1.128 | 0.000635 |
N | 139 | L139F | ttG | ttC | 1 | 1 | B.1.139 | 0.000733 |
N | 139 | L139F | ttG | ttT | 1 | 1 | B.1.159 | 0.012195 |
N | 139 | L139F | ttG | ttT | 1 | 1 | B.1.160.23 | 0.004831 |
N | 139 | L139F | ttG | ttT | 1 | 1 | B.1.160.26 | 0.002421 |
N | 139 | L139F | ttG | ttC | 1 | 1 | B.1.177.17 | 0.000821 |
N | 139 | L139F | ttG | ttC | 1 | 1 | B.1.177.43 | 0.001477 |
N | 139 | L139F | ttG | ttT | 1 | 1 | B.1.177.46 | 0.000918 |
N | 139 | L139F | ttG | ttT | 1 | 1 | B.1.177.65 | 0.000665 |
N | 139 | L139F | ttG | ttT | 1 | 1 | B.1.177.7 | 0.000165 |
N | 139 | L139F | ttG | ttT | 1 | 1 | B.1.177.79 | 0.002342 |
N | 139 | L139F | ttG | ttT | 1 | 1 | B.1.177.83 | 0.001481 |
N | 139 | L139F | ttG | ttC | 1 | 1 | B.1.258.14 | 0.00098 |
N | 139 | L139F | ttG | ttT | 1 | 1 | B.1.258.17 | 0.000104 |
N | 139 | L139F | ttG | ttT | 1 | 1 | B.1.333 | 0.010526 |
N | 139 | L139F | ttG | ttT | 1 | 1 | B.1.346 | 0.001311 |
N | 139 | L139F | ttG | ttT | 1 | 1 | B.1.349 | 0.000715 |
N | 139 | L139F | ttG | ttT | 1 | 1 | B.1.36.1 | 0.00114 |
N | 139 | L139F | ttG | ttT | 1 | 1 | B.1.36.10 | 0.004785 |
N | 139 | L139F | ttG | ttT | 1 | 1 | B.1.36.16 | 0.001425 |
N | 139 | L139F | ttG | ttT | 1 | 1 | B.1.36.19 | 0.009259 |
N | 139 | L139F | ttG | ttT | 1 | 1 | B.1.36.26 | 0.002857 |
N | 139 | L139F | ttG | ttT | 1 | 1 | B.1.36.27 | 0.000763 |
N | 139 | L139F | ttG | ttT | 1 | 1 | B.1.36.8 | 0.001 |
N | 139 | L139F | ttG | ttT | 1 | 1 | B.1.362 | 0.001541 |
N | 139 | L139F | ttG | ttT | 1 | 1 | B.1.389 | 0.001002 |
N | 139 | L139F | ttG | ttT | 1 | 1 | B.1.404 | 0.001302 |
N | 139 | L139F | ttG | ttT | 1 | 1 | B.1.459 | 0.004082 |
N | 139 | L139F | ttG | ttT | 1 | 1 | B.1.499 | 0.00105 |
N | 139 | L139F | ttG | ttT | 1 | 1 | B.1.517 | 0.000427 |
N | 139 | L139F | ttG | ttT | 1 | 1 | B.1.561 | 0.000397 |
N | 139 | L139F | ttG | ttT | 1 | 1 | B.1.564 | 0.000426 |
N | 139 | L139F | ttG | ttT | 1 | 1 | B.1.575 | 0.000303 |
N | 139 | L139F | ttG | ttC | 1 | 1 | B.1.576 | 0.000907 |
N | 139 | L139F | ttG | ttT | 1 | 1 | B.1.606 | 0.006024 |
N | 139 | L139F | ttG | ttT | 1 | 1 | B.1.609 | 0.000479 |
N | 139 | L139F | ttG | ttT | 1 | 1 | B.1.618 | 0.004032 |
N | 139 | L139F | ttG | ttT | 1 | 1 | B.1.619 | 0.000871 |
N | 139 | L139F | ttG | ttT | 1 | 1 | C.26 | 0.007353 |
N | 139 | L139F | ttG | ttT | 1 | 1 | C.36.3 | 0.000567 |
N | 139 | L139F | ttG | ttT | 1 | 1 | D.2 | 0.000075 |
N | 139 | L139F | ttG | ttT | 1 | 1 | N.4 | 0.004255 |
N | 139 | L139F | ttG | ttT | 1 | 1 | P.1.15 | 0.000232 |
N | 139 | L139F | ttG | ttT | 1 | 1 | Y.1 | 0.012821 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|