CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : Mut = H145Y

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N145H145YnonsynCacTac728172600.99711628706-28708
N145H145YnonsynCaCTaT7281210.0028842228706-28708

Details of the mutation H145Y within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N145H145YCacTac72607281All0.001389
N145H145YCaCTaT217281All0.000004
N145H145YCacTac17471748B.1.1.70.001564
N145H145YCaCTaT11748B.1.1.70.000001
N145H145YCacTac13681368B.1.177.870.995633
N145H145YCacTac924939B.1.1770.012167
N145H145YCaCTaT15939B.1.1770.000198
N145H145YCacTac515515AY.40.000802
N145H145YCacTac225225B.1.3510.006688
N145H145YCacTac203204B.10.001859
N145H145YCaCTaT1204B.10.000009
N145H145YCacTac191191B.1.1600.005957
N145H145YCacTac159159C.37.10.41623
N145H145YCacTac157157B.1.1.3890.951515
N145H145YCacTac8888B.1.617.20.000331
N145H145YCacTac8283B.1.4290.001929
N145H145YCaCTaT183B.1.4290.000024
N145H145YCacTac6868AY.430.000301
N145H145YCacTac6565AY.250.000391
N145H145YCacTac6464AY.1030.000397
N145H145YCacTac6262B.1.4000.026598
N145H145YCacTac6161B.1.5260.001434
N145H145YCacTac5959AY.440.000359
N145H145YCacTac5454B.1.10.00098
N145H145YCacTac4848AY.30.000477
N145H145YCacTac4242B.1.4270.002121
N145H145YCacTac3838B.1.2430.002644
N145H145YCacTac3232AY.39.10.001268
N145H145YCacTac3232B.1.177.810.006058
N145H145YCacTac3131AY.1190.001095
N145H145YCacTac2929AY.200.001127
N145H145YCacTac2626B.1.6370.0019
N145H145YCacTac2424B.1.1.3170.009881
N145H145YCacTac2323B.1.2760.389831
N145H145YCacTac2222AD.20.004817
N145H145YCacTac2121AY.290.000331
N145H145YCacTac2020B.1.1.5190.000794
N145H145YCacTac1919AY.1180.00119
N145H145YCacTac1818P.1.10.005718
N145H145YCacTac1717B.1.177.160.011296
N145H145YCacTac1717B.1.5820.008342
N145H145YCacTac1717P.10.000268
N145H145YCacTac1616C.370.001857
N145H145YCacTac1515W.40.02027
N145H145YCacTac1313AY.260.000368
N145H145YCacTac1313AY.9.20.000477
N145H145YCacTac1313B.1.20.000114
N145H145YCacTac1313B.1.2580.000865
N145H145YCacTac1313B.1.351.20.003933
N145H145YCacTac1212AY.60.000494
N145H145YCacTac1212B.1.3490.008578
N145H145YCacTac1111AY.390.000272
N145H145YCacTac1111AY.610.001153
N145H145YCacTac1111P.20.002053
N145H145YCacTac1010B.1.5750.003034
N145H145YCacTac99AY.980.000711
N145H145YCacTac99B.1.177.50.01118
N145H145YCacTac99D.20.000675
N145H145YCacTac88AY.1000.000368
N145H145YCacTac88AY.1200.000297
N145H145YCacTac88AY.750.000448
N145H145YCacTac88B.1.6210.000708
N145H145YCacTac77AY.1020.000186
N145H145YCacTac77AY.4.20.000152
N145H145YCacTac77AY.46.60.000505
N145H145YCacTac77AY.470.000218
N145H145YCacTac77B.1.1.4290.032258
N145H145YCacTac77Q.10.000884
N145H145YCacTac77Q.30.001015
N145H145YCacTac77Q.80.001154
N145H145YCacTac66AY.330.000401
N145H145YCacTac66AY.46.40.000987
N145H145YCacTac66AY.50.000124
N145H145YCacTac66AY.98.10.000291
N145H145YCacTac66B.1.1.1410.012072
N145H145YCacTac66B.1.2340.000792
N145H145YCacTac66B.1.6230.003219
N145H145YCacTac55AY.29.10.001103
N145H145YCacTac55AY.920.001436
N145H145YCacTac55B.1.1.2140.000277
N145H145YCacTac55B.1.1.2630.007788
N145H145YCacTac55B.1.1.2940.006329
N145H145YCacTac55B.1.1.630.001929
N145H145YCacTac55B.1.160.280.01462
N145H145YCacTac55B.1.177.570.001405
N145H145YCacTac55B.1.4090.003906
N145H145YCacTac55B.1.5610.001985
N145H145YCacTac44A.2.50.001996
N145H145YCacTac44AY.1050.002572
N145H145YCacTac44AY.420.000161
N145H145YCacTac44AY.660.004278
N145H145YCacTac44B0.000511
N145H145YCacTac44B.1.1.3120.007648
N145H145YCacTac44B.1.1.390.002039
N145H145YCacTac44B.1.177.170.003284
N145H145YCacTac44B.1.177.40.000844
N145H145YCacTac44B.1.2210.000284
N145H145YCacTac44B.1.5090.003463
N145H145YCacTac44B.1.5510.005161
N145H145YCacTac44B.1.617.10.000516
N145H145YCacTac44B.1.619.10.002566
N145H145YCacTac44C.360.003643
N145H145YCacTac44P.1.140.000191
N145H145YCacTac33A.180.15
N145H145YCacTac33AY.116.10.000934
N145H145YCaCTaT33AY.1170.000254
N145H145YCacTac33AY.1210.000406
N145H145YCacTac33AY.450.000365
N145H145YCacTac33AY.540.000286
N145H145YCacTac33AY.740.000347
N145H145YCacTac33AY.770.003382
N145H145YCacTac33B.1.1.1700.003741
N145H145YCacTac33B.1.1.2220.000612
N145H145YCacTac33B.1.1.250.001706
N145H145YCacTac33B.1.1.280.000934
N145H145YCacTac33B.1.1.3160.002775
N145H145YCacTac33B.1.1.330.001263
N145H145YCacTac33B.1.1.370.000579
N145H145YCacTac33B.1.1.4860.004732
N145H145YCacTac33B.1.1.5230.004687
N145H145YCacTac33B.1.177.620.003576
N145H145YCacTac33B.1.177.650.001996
N145H145YCacTac33B.1.2840.039474
N145H145YCacTac33B.1.30.007853
N145H145YCacTac33B.1.3990.005803
N145H145YCacTac33B.1.438.10.000322
N145H145YCacTac33B.1.5600.013889
N145H145YCacTac33B.1.5670.01
N145H145YCacTac33B.1.5760.00272
N145H145YCacTac33B.1.5780.053571
N145H145YCacTac33P.1.70.000958
N145H145YCacTac22A.10.000564
N145H145YCacTac22A.20.001324
N145H145YCacTac22AY.1010.000981
N145H145YCacTac22AY.1100.000225
N145H145YCacTac22AY.140.000176
N145H145YCacTac22AY.230.000139
N145H145YCacTac22AY.4.2.10.000298
N145H145YCacTac22AY.410.000588
N145H145YCacTac22AY.46.10.002053
N145H145YCacTac22AY.5.40.000553
N145H145YCacTac22AY.860.00166
N145H145YCacTac22AY.99.20.000184
N145H145YCacTac22B.1.1.1610.007067
N145H145YCacTac22B.1.1.3970.004505
N145H145YCacTac22B.1.1.4090.005666
N145H145YCacTac22B.1.1.4340.000697
N145H145YCacTac22B.1.1.4640.002946
N145H145YCacTac22B.1.1110.00235
N145H145YCacTac22B.1.1470.001512
N145H145YCacTac22B.1.160.150.009901
N145H145YCacTac22B.1.177.190.002861
N145H145YCacTac22B.1.177.540.001213
N145H145YCacTac22B.1.177.730.001133
N145H145YCacTac22B.1.258.110.000793
N145H145YCacTac22B.1.351.30.001753
N145H145YCacTac22B.1.36.290.001035
N145H145YCacTac22B.1.362.20.009434
N145H145YCacTac22B.1.3690.00057
N145H145YCacTac22B.1.4620.014493
N145H145YCacTac22B.1.4800.004975
N145H145YCacTac22B.1.5230.004902
N145H145YCacTac22B.1.6120.005305
N145H145YCacTac110.055556
N145H145YCacTac11A.2.5.20.001572
N145H145YCacTac11AK.10.012658
N145H145YCacTac11AU.10.001266
N145H145YCacTac11AY.100.00053
N145H145YCacTac11AY.1060.000335
N145H145YCacTac11AY.1070.000466
N145H145YCacTac11AY.1080.001103
N145H145YCacTac11AY.1110.000183
N145H145YCacTac11AY.160.00038
N145H145YCacTac11AY.220.002092
N145H145YCacTac11AY.23.10.000417
N145H145YCacTac11AY.240.000431
N145H145YCacTac11AY.3.10.000085
N145H145YCacTac11AY.340.000097
N145H145YCacTac11AY.34.10.00051
N145H145YCacTac11AY.350.000233
N145H145YCacTac11AY.360.000148
N145H145YCacTac11AY.4.10.000737
N145H145YCacTac11AY.4.50.000107
N145H145YCacTac11AY.460.000104
N145H145YCacTac11AY.550.000917
N145H145YCacTac11AY.7.10.000113
N145H145YCacTac11AY.7.20.000559
N145H145YCacTac11AY.710.000475
N145H145YCacTac11AY.720.001361
N145H145YCacTac11AY.810.001992
N145H145YCacTac11AY.840.000437
N145H145YCacTac11AY.90.000068
N145H145YCacTac11AY.9.10.000084
N145H145YCacTac11AY.950.000761
N145H145YCacTac11B.1.1.10.000327
N145H145YCacTac11B.1.1.1530.001095
N145H145YCacTac11B.1.1.1640.005155
N145H145YCacTac11B.1.1.1760.000439
N145H145YCacTac11B.1.1.1960.005714
N145H145YCacTac11B.1.1.1980.001468
N145H145YCacTac11B.1.1.2080.012195
N145H145YCacTac11B.1.1.2200.001859
N145H145YCacTac11B.1.1.2410.00207
N145H145YCacTac11B.1.1.2530.002506
N145H145YCacTac11B.1.1.2770.000759
N145H145YCacTac11B.1.1.2890.002083
N145H145YCacTac11B.1.1.2980.000862
N145H145YCacTac11B.1.1.3110.000358
N145H145YCacTac11B.1.1.3180.000302
N145H145YCacTac11B.1.1.3490.010309
N145H145YCacTac11B.1.1.3650.005587
N145H145YCacTac11B.1.1.4240.045455
N145H145YCacTac11B.1.1.4310.016129
N145H145YCacTac11B.1.1.4320.001266
N145H145YCacTac11B.1.1.50.008333
N145H145YCacTac11B.1.1280.000635
N145H145YCacTac11B.1.160.220.006757
N145H145YCacTac11B.1.160.80.001289
N145H145YCacTac11B.1.177.120.000152
N145H145YCacTac11B.1.177.150.000631
N145H145YCacTac11B.1.177.180.00116
N145H145YCacTac11B.1.177.230.003236
N145H145YCacTac11B.1.177.30.007634
N145H145YCacTac11B.1.177.350.000691
N145H145YCacTac11B.1.177.450.000381
N145H145YCacTac11B.1.177.600.000218
N145H145YCacTac11B.1.177.70.000165
N145H145YCacTac11B.1.177.720.00339
N145H145YCacTac11B.1.177.770.000726
N145H145YCacTac11B.1.177.790.002342
N145H145YCacTac11B.1.177.820.000477
N145H145YCacTac11B.1.177.830.001481
N145H145YCacTac11B.1.177.860.000183
N145H145YCacTac11B.1.177.90.001332
N145H145YCacTac11B.1.214.20.0006
N145H145YCacTac11B.1.2360.002053
N145H145YCacTac11B.1.258.140.00098
N145H145YCacTac11B.1.258.160.001637
N145H145YCacTac11B.1.258.30.001675
N145H145YCacTac11B.1.2650.001271
N145H145YCacTac11B.1.2800.007143
N145H145YCacTac11B.1.36.100.004785
N145H145YCacTac11B.1.36.380.001642
N145H145YCacTac11B.1.36.390.002217
N145H145YCacTac11B.1.3660.004878
N145H145YCacTac11B.1.3750.00082
N145H145YCacTac11B.1.3910.001127
N145H145YCacTac11B.1.3970.004854
N145H145YCacTac11B.1.3980.002976
N145H145YCacTac11B.1.4480.002625
N145H145YCacTac11B.1.4520.013699
N145H145YCacTac11B.1.4530.003236
N145H145YCacTac11B.1.4590.004082
N145H145YCacTac11B.1.4710.002732
N145H145YCacTac11B.1.5240.001406
N145H145YCacTac11B.1.5250.000113
N145H145YCacTac11B.1.5640.000426
N145H145YCacTac11B.1.5650.00081
N145H145YCacTac11B.1.5770.000687
N145H145YCacTac11B.1.5800.004065
N145H145YCacTac11B.1.5890.007576
N145H145YCacTac11B.1.595.20.04
N145H145YCacTac11B.1.6100.003546
N145H145YCacTac11B.1.621.10.000506
N145H145YCacTac11B.1.930.000934
N145H145YCacTac11B.460.020833
N145H145YCacTac11B.60.00091
N145H145YCacTac11C.140.004329
N145H145YCacTac11C.160.00106
N145H145YCacTac11C.230.005814
N145H145YCacTac11C.350.000774
N145H145YCacTac11D.30.005917
N145H145YCacTac11N.50.001767
N145H145YCacTac11P.1.170.000162
N145H145YCacTac11Q.40.000455
N145H145YCacTac11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.