CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
N | 212 | G212V | nonsyn | gGc | gTc | 4613 | 4612 | 0.999783 | 28907-28909 | |
N | 212 | G212V | nonsyn | gGC | gTT | 4613 | 1 | 0.000216779 | 28907-28909 |
Details of the mutation G212V within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
N | 212 | G212V | gGc | gTc | 4612 | 4613 | All | 0.000882 |
N | 212 | G212V | gGC | gTT | 1 | 4613 | All | 0 |
N | 212 | G212V | gGc | gTc | 1742 | 1742 | C.36.3 | 0.988088 |
N | 212 | G212V | gGc | gTc | 1067 | 1068 | C.36 | 0.971767 |
N | 212 | G212V | gGC | gTT | 1 | 1068 | C.36 | 0.000911 |
N | 212 | G212V | gGc | gTc | 328 | 328 | C.36.3.1 | 0.891304 |
N | 212 | G212V | gGc | gTc | 246 | 246 | AY.26 | 0.006964 |
N | 212 | G212V | gGc | gTc | 241 | 241 | C.36.1 | 1 |
N | 212 | G212V | gGc | gTc | 100 | 100 | B.1.1.7 | 0.00009 |
N | 212 | G212V | gGc | gTc | 96 | 96 | AY.4 | 0.000149 |
N | 212 | G212V | gGc | gTc | 84 | 84 | B.1 | 0.000769 |
N | 212 | G212V | gGc | gTc | 62 | 62 | B.1.1 | 0.001125 |
N | 212 | G212V | gGc | gTc | 61 | 61 | B.1.576 | 0.055304 |
N | 212 | G212V | gGc | gTc | 55 | 55 | B.1.617.2 | 0.000207 |
N | 212 | G212V | gGc | gTc | 53 | 53 | AY.103 | 0.000329 |
N | 212 | G212V | gGc | gTc | 29 | 29 | AY.61 | 0.003039 |
N | 212 | G212V | gGc | gTc | 29 | 29 | C.36.2 | 1 |
N | 212 | G212V | gGc | gTc | 24 | 24 | B.1.1.519 | 0.000953 |
N | 212 | G212V | gGc | gTc | 17 | 17 | AY.44 | 0.000103 |
N | 212 | G212V | gGc | gTc | 17 | 17 | B.1.1.1 | 0.005554 |
N | 212 | G212V | gGc | gTc | 15 | 15 | AY.118 | 0.00094 |
N | 212 | G212V | gGc | gTc | 14 | 14 | AP.1 | 0.021021 |
N | 212 | G212V | gGc | gTc | 14 | 14 | AY.119 | 0.000494 |
N | 212 | G212V | gGc | gTc | 13 | 13 | AY.43 | 0.000058 |
N | 212 | G212V | gGc | gTc | 13 | 13 | C.17 | 0.722222 |
N | 212 | G212V | gGc | gTc | 13 | 13 | K.3 | 0.080247 |
N | 212 | G212V | gGc | gTc | 11 | 11 | AY.42 | 0.000443 |
N | 212 | G212V | gGc | gTc | 11 | 11 | B.1.218 | 0.056701 |
N | 212 | G212V | gGc | gTc | 10 | 10 | AY.3 | 0.000099 |
N | 212 | G212V | gGc | gTc | 9 | 9 | AY.75 | 0.000504 |
N | 212 | G212V | gGc | gTc | 8 | 8 | AY.120 | 0.000297 |
N | 212 | G212V | gGc | gTc | 8 | 8 | AY.33 | 0.000534 |
N | 212 | G212V | gGc | gTc | 7 | 7 | AY.27 | 0.000453 |
N | 212 | G212V | gGc | gTc | 7 | 7 | B.1.1.294 | 0.008861 |
N | 212 | G212V | gGc | gTc | 7 | 7 | P.1 | 0.00011 |
N | 212 | G212V | gGc | gTc | 7 | 7 | P.6 | 0.022013 |
N | 212 | G212V | gGc | gTc | 5 | 5 | AY.23 | 0.000349 |
N | 212 | G212V | gGc | gTc | 5 | 5 | AY.25 | 0.00003 |
N | 212 | G212V | gGc | gTc | 5 | 5 | B.1.1.318 | 0.001509 |
N | 212 | G212V | gGc | gTc | 5 | 5 | B.1.177 | 0.000066 |
N | 212 | G212V | gGc | gTc | 5 | 5 | B.1.177.7 | 0.000824 |
N | 212 | G212V | gGc | gTc | 5 | 5 | B.1.2 | 0.000044 |
N | 212 | G212V | gGc | gTc | 5 | 5 | B.1.302 | 0.066667 |
N | 212 | G212V | gGc | gTc | 4 | 4 | AY.102 | 0.000106 |
N | 212 | G212V | gGc | gTc | 4 | 4 | AY.74 | 0.000463 |
N | 212 | G212V | gGc | gTc | 4 | 4 | AY.75.1 | 0.000721 |
N | 212 | G212V | gGc | gTc | 4 | 4 | B.1.1.326 | 0.007042 |
N | 212 | G212V | gGc | gTc | 4 | 4 | B.1.366 | 0.019512 |
N | 212 | G212V | gGc | gTc | 4 | 4 | B.1.609 | 0.001918 |
N | 212 | G212V | gGc | gTc | 3 | 3 | AY.113 | 0.000427 |
N | 212 | G212V | gGc | gTc | 3 | 3 | AY.5.4 | 0.00083 |
N | 212 | G212V | gGc | gTc | 3 | 3 | AY.57 | 0.001969 |
N | 212 | G212V | gGc | gTc | 3 | 3 | AY.98 | 0.000237 |
N | 212 | G212V | gGc | gTc | 3 | 3 | AY.98.1 | 0.000145 |
N | 212 | G212V | gGc | gTc | 3 | 3 | B.1.1.216 | 0.002671 |
N | 212 | G212V | gGc | gTc | 3 | 3 | B.1.1.25 | 0.001706 |
N | 212 | G212V | gGc | gTc | 3 | 3 | B.1.1.28 | 0.000934 |
N | 212 | G212V | gGc | gTc | 3 | 3 | B.1.1.317 | 0.001235 |
N | 212 | G212V | gGc | gTc | 3 | 3 | B.1.1.343 | 0.0625 |
N | 212 | G212V | gGc | gTc | 3 | 3 | B.1.1.448 | 0.006098 |
N | 212 | G212V | gGc | gTc | 3 | 3 | B.1.160 | 0.000094 |
N | 212 | G212V | gGc | gTc | 3 | 3 | B.1.429 | 0.000071 |
N | 212 | G212V | gGc | gTc | 3 | 3 | P.2 | 0.00056 |
N | 212 | G212V | gGc | gTc | 2 | 2 | A | 0.000774 |
N | 212 | G212V | gGc | gTc | 2 | 2 | AY.114 | 0.000462 |
N | 212 | G212V | gGc | gTc | 2 | 2 | AY.39 | 0.000049 |
N | 212 | G212V | gGc | gTc | 2 | 2 | AY.4.2 | 0.000043 |
N | 212 | G212V | gGc | gTc | 2 | 2 | AY.46 | 0.000208 |
N | 212 | G212V | gGc | gTc | 2 | 2 | AY.67 | 0.000929 |
N | 212 | G212V | gGc | gTc | 2 | 2 | AY.9.1 | 0.000167 |
N | 212 | G212V | gGc | gTc | 2 | 2 | AY.9.2 | 0.000073 |
N | 212 | G212V | gGc | gTc | 2 | 2 | B | 0.000256 |
N | 212 | G212V | gGc | gTc | 2 | 2 | B.1.1.207 | 0.002364 |
N | 212 | G212V | gGc | gTc | 2 | 2 | B.1.1.214 | 0.000111 |
N | 212 | G212V | gGc | gTc | 2 | 2 | B.1.1.316 | 0.00185 |
N | 212 | G212V | gGc | gTc | 2 | 2 | B.1.22 | 0.002635 |
N | 212 | G212V | gGc | gTc | 2 | 2 | B.1.351 | 0.000059 |
N | 212 | G212V | gGc | gTc | 2 | 2 | B.1.36 | 0.000292 |
N | 212 | G212V | gGc | gTc | 2 | 2 | B.1.398 | 0.005952 |
N | 212 | G212V | gGc | gTc | 2 | 2 | B.1.590 | 0.009091 |
N | 212 | G212V | gGc | gTc | 2 | 2 | B.1.617.1 | 0.000258 |
N | 212 | G212V | gGc | gTc | 2 | 2 | P.1.1 | 0.000635 |
N | 212 | G212V | gGc | gTc | 2 | 2 | Q.8 | 0.00033 |
N | 212 | G212V | gGc | gTc | 1 | 1 | 0.055556 | |
N | 212 | G212V | gGc | gTc | 1 | 1 | AY.10 | 0.00053 |
N | 212 | G212V | gGc | gTc | 1 | 1 | AY.100 | 0.000046 |
N | 212 | G212V | gGc | gTc | 1 | 1 | AY.108 | 0.001103 |
N | 212 | G212V | gGc | gTc | 1 | 1 | AY.117 | 0.000085 |
N | 212 | G212V | gGc | gTc | 1 | 1 | AY.121 | 0.000135 |
N | 212 | G212V | gGc | gTc | 1 | 1 | AY.16.1 | 0.00047 |
N | 212 | G212V | gGc | gTc | 1 | 1 | AY.3.1 | 0.000085 |
N | 212 | G212V | gGc | gTc | 1 | 1 | AY.32 | 0.000532 |
N | 212 | G212V | gGc | gTc | 1 | 1 | AY.38 | 0.000499 |
N | 212 | G212V | gGc | gTc | 1 | 1 | AY.4.4 | 0.000409 |
N | 212 | G212V | gGc | gTc | 1 | 1 | AY.4.5 | 0.000107 |
N | 212 | G212V | gGc | gTc | 1 | 1 | AY.5.3 | 0.000337 |
N | 212 | G212V | gGc | gTc | 1 | 1 | AY.52 | 0.000814 |
N | 212 | G212V | gGc | gTc | 1 | 1 | AY.53 | 0.000288 |
N | 212 | G212V | gGc | gTc | 1 | 1 | AY.55 | 0.000917 |
N | 212 | G212V | gGc | gTc | 1 | 1 | AY.71 | 0.000475 |
N | 212 | G212V | gGc | gTc | 1 | 1 | AY.8 | 0.000606 |
N | 212 | G212V | gGc | gTc | 1 | 1 | B.1.1.217 | 0.003636 |
N | 212 | G212V | gGc | gTc | 1 | 1 | B.1.1.229 | 0.005747 |
N | 212 | G212V | gGc | gTc | 1 | 1 | B.1.1.288 | 0.001916 |
N | 212 | G212V | gGc | gTc | 1 | 1 | B.1.1.306 | 0.000438 |
N | 212 | G212V | gGc | gTc | 1 | 1 | B.1.1.307 | 0.002532 |
N | 212 | G212V | gGc | gTc | 1 | 1 | B.1.1.312 | 0.001912 |
N | 212 | G212V | gGc | gTc | 1 | 1 | B.1.1.33 | 0.000421 |
N | 212 | G212V | gGc | gTc | 1 | 1 | B.1.1.409 | 0.002833 |
N | 212 | G212V | gGc | gTc | 1 | 1 | B.1.1.420 | 0.001006 |
N | 212 | G212V | gGc | gTc | 1 | 1 | B.1.1.47 | 0.005348 |
N | 212 | G212V | gGc | gTc | 1 | 1 | B.1.1.54 | 0.003021 |
N | 212 | G212V | gGc | gTc | 1 | 1 | B.1.1.70 | 0.000341 |
N | 212 | G212V | gGc | gTc | 1 | 1 | B.1.111 | 0.001175 |
N | 212 | G212V | gGc | gTc | 1 | 1 | B.1.177.73 | 0.000566 |
N | 212 | G212V | gGc | gTc | 1 | 1 | B.1.258 | 0.000067 |
N | 212 | G212V | gGc | gTc | 1 | 1 | B.1.258.17 | 0.000104 |
N | 212 | G212V | gGc | gTc | 1 | 1 | B.1.369 | 0.000285 |
N | 212 | G212V | gGc | gTc | 1 | 1 | B.1.375 | 0.00082 |
N | 212 | G212V | gGc | gTc | 1 | 1 | B.1.396 | 0.000706 |
N | 212 | G212V | gGc | gTc | 1 | 1 | B.1.416 | 0.001269 |
N | 212 | G212V | gGc | gTc | 1 | 1 | B.1.428 | 0.00102 |
N | 212 | G212V | gGc | gTc | 1 | 1 | B.1.438.1 | 0.000107 |
N | 212 | G212V | gGc | gTc | 1 | 1 | B.1.526 | 0.000024 |
N | 212 | G212V | gGc | gTc | 1 | 1 | B.1.533 | 0.009615 |
N | 212 | G212V | gGc | gTc | 1 | 1 | B.1.538 | 0.008065 |
N | 212 | G212V | gGc | gTc | 1 | 1 | B.1.543 | 0.01 |
N | 212 | G212V | gGc | gTc | 1 | 1 | B.1.637 | 0.000073 |
N | 212 | G212V | gGc | gTc | 1 | 1 | B.20 | 0.023256 |
N | 212 | G212V | gGc | gTc | 1 | 1 | B.6.6 | 0.000889 |
N | 212 | G212V | gGc | gTc | 1 | 1 | C.16 | 0.00106 |
N | 212 | G212V | gGc | gTc | 1 | 1 | N.5 | 0.001767 |
N | 212 | G212V | gGc | gTc | 1 | 1 | P.1.16 | 0.000374 |
N | 212 | G212V | gGc | gTc | 1 | 1 | P.1.17 | 0.000162 |
N | 212 | G212V | gGc | gTc | 1 | 1 | P.3 | 0.001595 |
N | 212 | G212V | gGc | gTc | 1 | 1 | Q.3 | 0.000145 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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