CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = N : Mut = G204R

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
N	204	G204R		nonsyn	Gga	Cga	1441893	1440956	0.99935	28883-28885
N	204	G204R		nonsyn	Gga	Aga	1441893	897	0.000622099	28883-28885
N	204	G204R		nonsyn	GgA	CgC	1441893	16	0.0000110965	28883-28885
N	204	G204R		nonsyn	GgA	CgG	1441893	12	0.00000832239	28883-28885
N	204	G204R		nonsyn	GgA	CgT	1441893	12	0.00000832239	28883-28885

Details of the mutation G204R within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
N	204	G204R	Gga	Cga	1440956	1441893	All	0.2756
N	204	G204R	Gga	Aga	897	1441893	All	0.000172
N	204	G204R	GgA	CgC	16	1441893	All	0.000003
N	204	G204R	GgA	CgG	12	1441893	All	0.000002
N	204	G204R	GgA	CgT	12	1441893	All	0.000002
N	204	G204R	Gga	Cga	1017755	1017785	B.1.1.7	0.911118
N	204	G204R	Gga	Aga	13	1017785	B.1.1.7	0.000012
N	204	G204R	GgA	CgC	7	1017785	B.1.1.7	0.000006
N	204	G204R	GgA	CgT	5	1017785	B.1.1.7	0.000004
N	204	G204R	GgA	CgG	5	1017785	B.1.1.7	0.000004
N	204	G204R	Gga	Cga	61055	61061	P.1	0.96186
N	204	G204R	GgA	CgG	4	61061	P.1	0.000063
N	204	G204R	Gga	Aga	1	61061	P.1	0.000016
N	204	G204R	GgA	CgT	1	61061	P.1	0.000016
N	204	G204R	Gga	Cga	53391	53393	B.1.1	0.968562
N	204	G204R	GgA	CgT	2	53393	B.1.1	0.000036
N	204	G204R	Gga	Cga	24657	24657	B.1.1.519	0.979152
N	204	G204R	Gga	Cga	20788	20788	P.1.14	0.99369
N	204	G204R	Gga	Cga	18019	18019	B.1.1.214	0.999279
N	204	G204R	Gga	Cga	13210	13211	D.2	0.991295
N	204	G204R	GgA	CgT	1	13211	D.2	0.000075
N	204	G204R	Gga	Cga	11109	11109	R.1	0.99991
N	204	G204R	Gga	Cga	9310	9310	B.1.1.284	0.999893
N	204	G204R	Gga	Cga	8543	8543	C.37	0.991527
N	204	G204R	Gga	Cga	7692	7692	Q.1	0.971703
N	204	G204R	Gga	Cga	6820	6820	Q.3	0.989123
N	204	G204R	Gga	Cga	6007	6008	Q.8	0.9906
N	204	G204R	GgA	CgG	1	6008	Q.8	0.000165
N	204	G204R	Gga	Cga	5365	5365	P.1.17	0.867842
N	204	G204R	Gga	Cga	5271	5271	P.2	0.983763
N	204	G204R	Gga	Cga	5094	5095	B.1.1.37	0.982449
N	204	G204R	Gga	Aga	1	5095	B.1.1.37	0.000193
N	204	G204R	Gga	Cga	4659	4659	B.1.1.222	0.950428
N	204	G204R	Gga	Cga	4552	4552	AD.2	0.996716
N	204	G204R	Gga	Cga	4163	4164	P.1.15	0.96724
N	204	G204R	GgA	CgT	1	4164	P.1.15	0.000232
N	204	G204R	Gga	Cga	3628	3628	P.1.10	0.977634
N	204	G204R	Gga	Cga	3284	3325	B.1	0.03008
N	204	G204R	Gga	Aga	41	3325	B.1	0.000376
N	204	G204R	Gga	Cga	3192	3192	B.1.1.318	0.963186
N	204	G204R	Gga	Cga	3185	3185	B.1.1.28	0.991285
N	204	G204R	Gga	Cga	3081	3081	P.1.7	0.983716
N	204	G204R	Gga	Cga	3047	3048	B.1.1.1	0.995426
N	204	G204R	GgA	CgC	1	3048	B.1.1.1	0.000327
N	204	G204R	Gga	Cga	2912	2912	B.1.1.70	0.993179
N	204	G204R	Gga	Cga	2835	2835	B.1.1.434	0.988149
N	204	G204R	Gga	Cga	2773	2773	B.1.1.311	0.993195
N	204	G204R	Gga	Cga	2589	2589	B.1.1.63	0.998843
N	204	G204R	Gga	Cga	2550	2551	P.1.16	0.953984
N	204	G204R	Gga	Aga	1	2551	P.1.16	0.000374
N	204	G204R	Gga	Cga	2424	2426	B.1.1.317	0.997942
N	204	G204R	GgA	CgC	2	2426	B.1.1.317	0.000823
N	204	G204R	Gga	Cga	2420	2421	P.1.1	0.768742
N	204	G204R	Gga	Aga	1	2421	P.1.1	0.000318
N	204	G204R	Gga	Cga	2372	2372	B.1.1.33	0.998316
N	204	G204R	Gga	Cga	2271	2271	B.1.1.176	0.997803
N	204	G204R	Gga	Cga	2235	2235	B.1.1.369	0.997323
N	204	G204R	Gga	Cga	2208	2209	B.1.1.306	0.967996
N	204	G204R	Gga	Aga	1	2209	B.1.1.306	0.000438
N	204	G204R	Gga	Cga	2155	2155	Q.4	0.979991
N	204	G204R	Gga	Cga	2043	2043	AE.8	0.999022
N	204	G204R	Gga	Cga	1860	1861	B.1.1.39	0.948012
N	204	G204R	Gga	Aga	1	1861	B.1.1.39	0.00051
N	204	G204R	Gga	Cga	1758	1759	C.36.3	0.997164
N	204	G204R	GgA	CgC	1	1759	C.36.3	0.000567
N	204	G204R	Gga	Cga	1754	1754	B.1.1.25	0.997157
N	204	G204R	Gga	Cga	1591	1591	Q.2	0.976074
N	204	G204R	Gga	Cga	1472	1472	B.1.1.50	0.999321
N	204	G204R	Gga	Cga	1409	1409	B.1.1.372	0.970386
N	204	G204R	Gga	Cga	1375	1377	P.1.12	0.665537
N	204	G204R	Gga	Aga	1	1377	P.1.12	0.000484
N	204	G204R	GgA	CgT	1	1377	P.1.12	0.000484
N	204	G204R	Gga	Cga	1340	1340	B.1.1.291	0.994803
N	204	G204R	Gga	Cga	1307	1312	B.1.1.277	0.991654
N	204	G204R	GgA	CgC	4	1312	B.1.1.277	0.003035
N	204	G204R	Gga	Aga	1	1312	B.1.1.277	0.000759
N	204	G204R	Gga	Cga	1274	1274	C.35	0.986068
N	204	G204R	Gga	Cga	1256	1256	B.1.1.348	1
N	204	G204R	Gga	Cga	1200	1200	AZ.2	0.985222
N	204	G204R	Gga	Cga	1158	1158	B.1.1.298	0.998276
N	204	G204R	Gga	Cga	1152	1152	AZ.1	0.999133
N	204	G204R	Gga	Cga	1116	1117	B.1.1.216	0.993767
N	204	G204R	GgA	CgT	1	1117	B.1.1.216	0.00089
N	204	G204R	Gga	Cga	1095	1095	B.1.1.157	1
N	204	G204R	Gga	Cga	1091	1091	P.1.13	0.980234
N	204	G204R	Gga	Cga	1085	1085	B.1.1.416	0.9819
N	204	G204R	Gga	Cga	1080	1080	B.1.1.316	0.999075
N	204	G204R	Gga	Cga	1034	1034	P.1.17.1	0.904637
N	204	G204R	Gga	Cga	1018	1018	P.1.4	0.994141
N	204	G204R	Gga	Cga	994	994	B.1.1.420	1
N	204	G204R	Gga	Cga	947	947	C.36	0.862477
N	204	G204R	Gga	Cga	929	929	B.1.1.333	1
N	204	G204R	Gga	Cga	897	897	C.16	0.95122
N	204	G204R	Gga	Cga	883	883	B.1.1.10	0.984392
N	204	G204R	Gga	Cga	879	879	B.1.1.279	0.985426
N	204	G204R	Gga	Cga	856	856	P.1.2	0.989595
N	204	G204R	Gga	Cga	847	847	B.1.1.301	0.998821
N	204	G204R	Gga	Cga	846	846	B.1.1.207	1
N	204	G204R	Gga	Cga	796	796	B.1.1.170	0.992519
N	204	G204R	Gga	Cga	775	775	B.1.1.294	0.981013
N	204	G204R	Gga	Cga	736	736	B.1.1.269	0.99594
N	204	G204R	Gga	Cga	710	710	B.1.1.377	0.980663
N	204	G204R	Gga	Cga	708	708	B.1.1.432	0.896203
N	204	G204R	Gga	Cga	701	701	B.1.1.433	0.998575
N	204	G204R	Gga	Cga	673	673	B.1.1.198	0.988253
N	204	G204R	Gga	Cga	666	666	AP.1	1
N	204	G204R	Gga	Cga	666	666	B.1.1.464	0.980854
N	204	G204R	Gga	Cga	658	658	B.1.1.189	0.995461
N	204	G204R	Gga	Cga	641	641	B.1.1.263	0.998442
N	204	G204R	Gga	Cga	637	637	B.1.1.523	0.995313
N	204	G204R	Gga	Cga	634	634	B.1.1.486	1
N	204	G204R	Gga	Cga	632	632	AZ.3	0.960486
N	204	G204R	Gga	Cga	607	607	P.3	0.968102
N	204	G204R	Gga	Cga	579	579	B.1.1.51	0.994845
N	204	G204R	Gga	Cga	574	574	C.30	0.991364
N	204	G204R	Gga	Cga	566	566	N.5	1
N	204	G204R	Gga	Cga	563	563	B.1.1.326	0.991197
N	204	G204R	Gga	Cga	534	534	B.1.1.232	0.969147
N	204	G204R	Gga	Cga	529	529	B.1.1.220	0.983271
N	204	G204R	Gga	Cga	525	525	L.1	1
N	204	G204R	Gga	Cga	521	521	B.1.1.312	0.996176
N	204	G204R	Gga	Cga	520	520	B.1.1.288	0.996169
N	204	G204R	Gga	Cga	514	514	P.1.6	1
N	204	G204R	Gga	Cga	495	495	B.1.1.141	0.995976
N	204	G204R	Gga	Cga	482	482	B.1.1.241	0.99793
N	204	G204R	Gga	Cga	482	482	B.1.1.302	1
N	204	G204R	Gga	Cga	480	480	B.1.1.448	0.97561
N	204	G204R	Gga	Cga	478	478	B.1.1.289	0.995833
N	204	G204R	Gga	Cga	447	447	B.1.1.297	1
N	204	G204R	Gga	Cga	444	444	B.1.1.397	1
N	204	G204R	Gga	Cga	426	426	B.1.1.192	0.983834
N	204	G204R	Gga	Cga	420	420	B.1.1.374	0.997625
N	204	G204R	Gga	Cga	411	411	B.1.1.121	0.997573
N	204	G204R	Gga	Cga	403	403	C.1	0.964115
N	204	G204R	Gga	Cga	399	399	B.1.1.253	1
N	204	G204R	Gga	Cga	392	392	B.1.1.307	0.992405
N	204	G204R	Gga	Cga	386	386	C.18	1
N	204	G204R	Gga	Cga	369	369	B.1.1.417	0.997297
N	204	G204R	Gga	Cga	369	369	B.1.1.83	1
N	204	G204R	Gga	Cga	366	366	C.36.3.1	0.994565
N	204	G204R	Gga	Cga	362	362	B.1.1.303	1
N	204	G204R	Gga	Cga	357	357	B.1.1.153	0.391019
N	204	G204R	Gga	Cga	357	357	B.1.1.351	0.997207
N	204	G204R	Gga	Cga	353	353	B.1.1.409	1
N	204	G204R	Gga	Cga	348	348	B.1.1.48	1
N	204	G204R	Gga	Cga	345	345	B.1.1.286	1
N	204	G204R	Gga	Cga	336	336	B.1.1.4	1
N	204	G204R	Gga	Cga	329	329	B.1.1.204	1
N	204	G204R	Gga	Cga	328	328	AW.1	1
N	204	G204R	Gga	Cga	327	327	B.1.1.255	0.990909
N	204	G204R	Gga	Cga	324	324	B.1.1.280	1
N	204	G204R	Gga	Cga	323	323	B.1.1.231	1
N	204	G204R	Gga	Cga	323	323	B.1.1.368	0.996914
N	204	G204R	Gga	Cga	319	319	B.1.1.54	0.963746
N	204	G204R	Gga	Cga	318	318	B.1.1.228	0.969512
N	204	G204R	Gga	Cga	318	318	P.6	1
N	204	G204R	Gga	Cga	316	316	B.1.1.265	0.996845
N	204	G204R	Gga	Cga	312	312	B.1.1.304	0.876404
N	204	G204R	Gga	Cga	306	306	B.1.1.398	0.987097
N	204	G204R	Gga	Cga	298	298	AZ.4	1
N	204	G204R	Gga	Cga	296	296	B.1.1.258	0.964169
N	204	G204R	Gga	Cga	292	292	B.1.1.174	0.986486
N	204	G204R	Gga	Cga	287	287	B.1.1.186	0.986254
N	204	G204R	Gga	Cga	285	285	AZ.5	1
N	204	G204R	Gga	Cga	282	282	B.1.1.161	0.996466
N	204	G204R	Gga	Cga	282	282	L.3	1
N	204	G204R	Gga	Cga	278	278	B.1.1.337	1
N	204	G204R	Gga	Cga	278	278	B.1.1.8	0.996416
N	204	G204R	Gga	Cga	275	275	B.1.1.217	1
N	204	G204R	Gga	Cga	269	269	B.1.1.205	1
N	204	G204R	Gga	Cga	266	266	B.1.1.171	0.977941
N	204	G204R	Gga	Cga	263	263	AH.3	1
N	204	G204R	Gga	Cga	263	263	P.4	1
N	204	G204R	Gga	Cga	260	260	B.1.1.329	1
N	204	G204R	Gga	Cga	259	259	B.1.1.305	1
N	204	G204R	Gga	Cga	246	246	C.37.1	0.643979
N	204	G204R	Gga	Cga	244	244	B.1.1.243	0.995918
N	204	G204R	Gga	Cga	241	241	C.36.1	1
N	204	G204R	Gga	Cga	237	237	AD.1	0.975309
N	204	G204R	Gga	Cga	235	235	N.4	1
N	204	G204R	Gga	Cga	234	234	C.1.2	0.995745
N	204	G204R	Gga	Cga	232	232	B.1.1.74	1
N	204	G204R	Gga	Cga	231	231	C.14	1
N	204	G204R	Gga	Cga	228	228	B.1.1.227	0.991304
N	204	G204R	Gga	Cga	227	227	B.1.1.354	0.995614
N	204	G204R	Gga	Cga	224	224	B.1.1.385	1
N	204	G204R	Gga	Cga	224	224	C.8	1
N	204	G204R	Gga	Cga	223	223	P.7	0.973799
N	204	G204R	Gga	Cga	220	220	B.1.1.181	1
N	204	G204R	Gga	Aga	219	219	B.1.377	1
N	204	G204R	Gga	Cga	218	218	B.1.1.46	0.951965
N	204	G204R	Gga	Cga	218	218	B.1.1.67	0.995434
N	204	G204R	Gga	Cga	217	217	B.1.1.429	1
N	204	G204R	Gga	Cga	214	214	B.1.1.159	1
N	204	G204R	Gga	Cga	213	213	B.1.1.135	1
N	204	G204R	Gga	Cga	213	213	B.1.1.240	1
N	204	G204R	Gga	Cga	208	208	B.1.1.191	0.990476
N	204	G204R	Gga	Cga	208	208	P.1.9	1
N	204	G204R	Gga	Cga	206	206	P.1.8	0.985646
N	204	G204R	Gga	Aga	196	205	AY.4	0.000305
N	204	G204R	Gga	Cga	9	205	AY.4	0.000014
N	204	G204R	Gga	Cga	197	204	B.1.177	0.002594
N	204	G204R	Gga	Aga	7	204	B.1.177	0.000092
N	204	G204R	Gga	Cga	183	203	B.1.2	0.001611
N	204	G204R	Gga	Aga	20	203	B.1.2	0.000176
N	204	G204R	Gga	Cga	201	201	D.5	1
N	204	G204R	Gga	Cga	200	200	B.1.1.219	1
N	204	G204R	Gga	Cga	199	199	B.1.1.528	0.956731
N	204	G204R	Gga	Cga	198	198	AV.1	1
N	204	G204R	Gga	Cga	198	198	S.1	0.980198
N	204	G204R	Gga	Cga	197	197	B.1.1.274	0.994949
N	204	G204R	Gga	Cga	195	195	AT.1	1
N	204	G204R	Gga	Cga	194	194	B.1.1.164	1
N	204	G204R	Gga	Cga	192	192	B.1.1.272	1
N	204	G204R	Gga	Cga	188	188	B.1.1.26	0.984293
N	204	G204R	Gga	Cga	186	187	B.1.1.47	0.994652
N	204	G204R	GgA	CgG	1	187	B.1.1.47	0.005348
N	204	G204R	Gga	Cga	186	186	B.1.1.58	1
N	204	G204R	Gga	Cga	185	185	B.1.1.237	1
N	204	G204R	Gga	Cga	183	183	B.1.1.525	1
N	204	G204R	Gga	Cga	182	182	B.1.1.521	0.973262
N	204	G204R	Gga	Cga	178	178	B.1.1.362	1
N	204	G204R	Gga	Cga	178	178	B.1.1.487	0.994413
N	204	G204R	Gga	Cga	177	177	B.1.1.27	1
N	204	G204R	Gga	Cga	176	176	B.1.1.365	0.98324
N	204	G204R	Gga	Cga	175	175	B.1.1.196	1
N	204	G204R	Gga	Cga	174	174	B.1.1.229	1
N	204	G204R	Gga	Cga	172	172	N.3	1
N	204	G204R	Gga	Cga	171	171	C.23	0.994186
N	204	G204R	Gga	Cga	170	170	B.1.1.309	0.994152
N	204	G204R	Gga	Cga	169	169	D.3	1
N	204	G204R	Gga	Cga	168	168	B.1.1.194	0.831683
N	204	G204R	Gga	Cga	167	167	B.1.1.226	0.97093
N	204	G204R	Gga	Cga	166	166	B.1.1.210	0.948571
N	204	G204R	Gga	Cga	166	166	B.1.1.363	0.994012
N	204	G204R	Gga	Cga	166	166	B.1.1.376	0.988095
N	204	G204R	Gga	Cga	165	165	B.1.1.138	1
N	204	G204R	Gga	Cga	165	165	B.1.1.389	1
N	204	G204R	Gga	Cga	165	165	B.1.1.71	1
N	204	G204R	Gga	Cga	165	165	B.1.1.89	1
N	204	G204R	Gga	Cga	162	162	K.3	1
N	204	G204R	Gga	Cga	161	161	B.1.532	1
N	204	G204R	Gga	Cga	158	158	B.1.1.41	1
N	204	G204R	Gga	Cga	158	158	B.1.1.518	1
N	204	G204R	Gga	Cga	155	158	B.1.526	0.003643
N	204	G204R	Gga	Aga	3	158	B.1.526	0.000071
N	204	G204R	Gga	Cga	154	154	B.1.1.406	1
N	204	G204R	Gga	Cga	154	154	B.1.1.59	1
N	204	G204R	Gga	Cga	154	154	N.9	0.916667
N	204	G204R	Gga	Cga	153	153	B.1.1.285	1
N	204	G204R	Gga	Cga	150	150	B.1.375	0.122951
N	204	G204R	Gga	Cga	150	150	C.2.1	1
N	204	G204R	Gga	Cga	150	150	Q.6	0.993377
N	204	G204R	Gga	Cga	149	149	C.30.1	1
N	204	G204R	Gga	Cga	145	145	B.1.1.413	1
N	204	G204R	Gga	Cga	145	145	B.1.1.517	0.986395
N	204	G204R	Gga	Cga	143	143	B.1.1.113	1
N	204	G204R	Gga	Cga	143	143	B.1.1.236	0.986207
N	204	G204R	Gga	Cga	140	141	B.1.1.526	0.496454
N	204	G204R	Gga	Aga	1	141	B.1.1.526	0.003546
N	204	G204R	Gga	Cga	141	141	N.6	1
N	204	G204R	Gga	Cga	140	140	B.1.1.273	0.945946
N	204	G204R	Gga	Cga	139	139	B.1.1.128	0.985816
N	204	G204R	Gga	Cga	139	139	B.1.1.225	1
N	204	G204R	Gga	Cga	139	139	C.12	1
N	204	G204R	Gga	Cga	136	136	B.1.1.378	0.992701
N	204	G204R	Gga	Cga	136	136	C.26	1
N	204	G204R	Gga	Cga	135	135	B.1.1.419	1
N	204	G204R	Gga	Cga	134	134	B.1.1.12	1
N	204	G204R	Gga	Cga	127	131	B.1.1.163	0.969466
N	204	G204R	Gga	Aga	4	131	B.1.1.163	0.030534
N	204	G204R	Gga	Cga	131	131	C.3	1
N	204	G204R	Gga	Cga	130	130	B.1.1.200	0.970149
N	204	G204R	Gga	Cga	130	130	B.1.1.218	1
N	204	G204R	Gga	Cga	130	130	B.1.1.412	0.992366
N	204	G204R	Gga	Cga	126	126	B.1.1.251	1
N	204	G204R	Gga	Cga	123	123	AZ.2.1	1
N	204	G204R	Gga	Cga	123	123	C.38	0.991935
N	204	G204R	Gga	Cga	118	118	B.1.1.133	1
N	204	G204R	Gga	Cga	118	118	B.1.1.453	1
N	204	G204R	Gga	Cga	117	117	B.1.1.315	0.991525
N	204	G204R	Gga	Cga	117	117	B.1.1.391	1
N	204	G204R	Gga	Cga	116	116	B.1.1.356	0.991453
N	204	G204R	Gga	Cga	116	116	B.1.1.462	1
N	204	G204R	Gga	Cga	115	115	B.1.1.3	1
N	204	G204R	Gga	Cga	115	115	B.1.1.507	1
N	204	G204R	Gga	Cga	114	115	B.1.1.61	1
N	204	G204R	GgA	CgG	1	115	B.1.1.61	0.008772
N	204	G204R	Gga	Cga	114	114	B.1.1.322	1
N	204	G204R	Gga	Cga	114	114	B.1.1.5	0.95
N	204	G204R	Gga	Cga	113	113	B.1.1.187	1
N	204	G204R	Gga	Cga	112	112	B.1.1.115	1
N	204	G204R	Gga	Cga	112	112	B.1.1.209	1
N	204	G204R	Gga	Cga	112	112	B.1.1.261	0.965517
N	204	G204R	Gga	Cga	109	109	B.1.1.129	1
N	204	G204R	Gga	Cga	109	109	B.1.1.230	1
N	204	G204R	Gga	Cga	108	108	P.1.10.1	0.878049
N	204	G204R	Gga	Cga	106	106	B.1.1.428	1
N	204	G204R	Gga	Cga	105	105	AS.1	1
N	204	G204R	Gga	Cga	105	105	B.1.1.148	0.921053
N	204	G204R	Gga	Cga	103	103	B.1.1.117	1
N	204	G204R	Gga	Cga	103	103	B.1.1.257	1
N	204	G204R	Gga	Cga	103	103	B.1.533	0.990385
N	204	G204R	Gga	Cga	102	102	B.1.1.380	1
N	204	G204R	Gga	Cga	64	102	B.1.617.2	0.000241
N	204	G204R	Gga	Aga	38	102	B.1.617.2	0.000143
N	204	G204R	Gga	Cga	100	100	B.1.1.101	1
N	204	G204R	Gga	Cga	100	100	C.4	1
N	204	G204R	Gga	Cga	99	99	B.1.1.221	1
N	204	G204R	Gga	Cga	99	99	B.1.1.267	1
N	204	G204R	Gga	Cga	98	98	B.1.1.125	1
N	204	G204R	Gga	Cga	98	98	P.1.11	1
N	204	G204R	Gga	Cga	97	97	B.1.1.270	1
N	204	G204R	Gga	Cga	97	97	B.1.1.29	1
N	204	G204R	Gga	Cga	97	97	B.1.1.349	1
N	204	G204R	Gga	Cga	96	96	B.1.1.437	1
N	204	G204R	Gga	Cga	95	95	B.1.1.118	0.969388
N	204	G204R	Gga	Cga	95	95	B.1.1.339	1
N	204	G204R	Gga	Cga	95	95	B.1.1.371	0.989583
N	204	G204R	Gga	Cga	94	95	B.1.596	0.008191
N	204	G204R	Gga	Aga	1	95	B.1.596	0.000087
N	204	G204R	Gga	Cga	94	94	B.1.1.75	1
N	204	G204R	Gga	Cga	94	94	C.11	1
N	204	G204R	Gga	Cga	93	93	B.1.1.180	1
N	204	G204R	Gga	Cga	93	93	B.1.1.300	1
N	204	G204R	Gga	Cga	88	90	B	0.011247
N	204	G204R	Gga	Aga	2	90	B	0.000256
N	204	G204R	Gga	Cga	89	89	B.1.1.254	1
N	204	G204R	Gga	Cga	89	89	B.1.1.275	1
N	204	G204R	Gga	Cga	89	89	B.1.1.344	0.956989
N	204	G204R	Gga	Cga	88	88	AE.1	1
N	204	G204R	Gga	Cga	88	88	B.1.1.134	1
N	204	G204R	Gga	Cga	88	88	L.2	1
N	204	G204R	Gga	Cga	87	87	B.1.1.57	1
N	204	G204R	Gga	Cga	86	86	B.1.1.282	1
N	204	G204R	Gga	Cga	86	86	B.1.1.331	1
N	204	G204R	Gga	Cga	84	84	B.1.1.308	0.988235
N	204	G204R	Gga	Cga	84	84	B.1.1.402	0.933333
N	204	G204R	Gga	Cga	83	83	AH.2	1
N	204	G204R	Gga	Cga	83	83	B.1.1.234	1
N	204	G204R	Gga	Cga	83	83	B.1.1.440	0.976471
N	204	G204R	Gga	Cga	82	83	B.1.1.461	0.987952
N	204	G204R	GgA	CgC	1	83	B.1.1.461	0.012048
N	204	G204R	Gga	Cga	82	82	B.1.1.208	1
N	204	G204R	Gga	Cga	82	82	B.1.1.266	1
N	204	G204R	Gga	Cga	82	82	B.1.1.299	1
N	204	G204R	Gga	Cga	82	82	B.1.1.52	1
N	204	G204R	Gga	Cga	81	81	B.1.1.158	0.987805
N	204	G204R	Gga	Cga	81	81	B.1.1.513	1
N	204	G204R	Gga	Cga	79	79	AK.1	1
N	204	G204R	Gga	Cga	79	79	B.1.1.370	1
N	204	G204R	Gga	Cga	79	79	B.1.534	0.9875
N	204	G204R	Gga	Cga	78	78	B.1.1.137	0.975
N	204	G204R	Gga	Cga	77	77	AL.1	1
N	204	G204R	Gga	Cga	77	77	B.1.1.55	1
N	204	G204R	Gga	Cga	76	76	B.1.1.34	1
N	204	G204R	Gga	Cga	74	74	B.1.1.15	1
N	204	G204R	Gga	Cga	74	74	B.1.177.73	0.041903
N	204	G204R	Gga	Cga	73	73	B.1.1.256	1
N	204	G204R	Gga	Cga	73	73	B.1.1.53	1
N	204	G204R	Gga	Cga	73	73	P.5	1
N	204	G204R	Gga	Cga	72	72	B.1.1.375	0.857143
N	204	G204R	Gga	Cga	71	71	B.1.1.323	1
N	204	G204R	Gga	Cga	71	71	B.1.1.45	1
N	204	G204R	Gga	Cga	70	70	B.1.1.224	1
N	204	G204R	Gga	Cga	69	69	R.2	1
N	204	G204R	Gga	Cga	68	68	B.1.1.111	1
N	204	G204R	Gga	Cga	68	68	B.1.1.411	1
N	204	G204R	Gga	Cga	67	67	AZ.6	0.563025
N	204	G204R	Gga	Cga	67	67	B.1.1.132	1
N	204	G204R	Gga	Cga	67	67	B.1.1.43	1
N	204	G204R	Gga	Cga	66	66	B.1.1.262	1
N	204	G204R	Gga	Cga	66	66	B.1.1.310	1
N	204	G204R	Gga	Cga	65	65	B.1.1.130	1
N	204	G204R	Gga	Cga	65	65	B.1.1.165	1
N	204	G204R	Gga	Cga	65	65	B.1.1.355	1
N	204	G204R	Gga	Cga	64	64	AS.2	1
N	204	G204R	Gga	Cga	64	64	B.1.1.465	1
N	204	G204R	Gga	Cga	62	64	B.1.160	0.001934
N	204	G204R	Gga	Aga	2	64	B.1.160	0.000062
N	204	G204R	Gga	Cga	64	64	B.1.221	0.004546
N	204	G204R	Gga	Cga	63	63	B.1.1.366	1
N	204	G204R	Gga	Cga	63	63	B.1.1.404	1
N	204	G204R	Gga	Cga	62	62	B.1.1.268	0.925373
N	204	G204R	Gga	Cga	62	62	B.1.1.431	1
N	204	G204R	Gga	Cga	62	62	B.1.1.459	0.953846
N	204	G204R	Gga	Cga	61	61	B.1.1.149	1
N	204	G204R	Gga	Cga	61	61	B.1.1.244	0.938462
N	204	G204R	Gga	Cga	61	61	C.2	0.983871
N	204	G204R	Gga	Cga	60	60	B.1.1.17	1
N	204	G204R	Gga	Cga	60	60	B.1.1.336	1
N	204	G204R	Gga	Cga	60	60	B.1.1.485	1
N	204	G204R	Gga	Cga	59	59	B.1.1.203	1
N	204	G204R	Gga	Cga	59	59	B.1.1.328	1
N	204	G204R	Gga	Cga	59	59	N.1	1
N	204	G204R	Gga	Cga	58	58	B.1.1.14	1
N	204	G204R	Gga	Cga	58	58	B.1.1.338	1
N	204	G204R	Gga	Cga	58	58	B.1.1.522	1
N	204	G204R	Gga	Cga	58	58	Q.5	0.983051
N	204	G204R	Gga	Cga	57	57	B.1.1.142	1
N	204	G204R	Gga	Cga	57	57	B.1.1.319	1
N	204	G204R	Gga	Cga	57	57	B.1.1.49	1
N	204	G204R	Gga	Cga	56	56	B.1.1.56	1
N	204	G204R	Gga	Cga	56	56	C.31	1
N	204	G204R	Gga	Cga	55	55	B.1.1.172	1
N	204	G204R	Gga	Cga	55	55	B.1.1.290	1
N	204	G204R	Gga	Cga	55	55	B.1.1.296	1
N	204	G204R	Gga	Cga	55	55	B.1.1.320	1
N	204	G204R	Gga	Cga	55	55	B.1.1.347	1
N	204	G204R	Gga	Cga	54	54	AE.5	1
N	204	G204R	Gga	Cga	54	54	B.1.1.123	0.964286
N	204	G204R	Gga	Cga	54	54	B.1.1.169	0.981818
N	204	G204R	Gga	Cga	54	54	B.1.1.442	1
N	204	G204R	Gga	Cga	54	54	C.27	1
N	204	G204R	Gga	Cga	52	52	B.1.1.467	1
N	204	G204R	Gga	Cga	52	52	C.39	0.981132
N	204	G204R	Gga	Cga	35	51	AY.44	0.000213
N	204	G204R	Gga	Aga	16	51	AY.44	0.000097
N	204	G204R	Gga	Cga	51	51	B.1.1.95	1
N	204	G204R	Gga	Cga	50	50	AN.1	1
N	204	G204R	Gga	Cga	50	50	B.1.1.500	1
N	204	G204R	Gga	Cga	50	50	B.1.1.515	1
N	204	G204R	Gga	Cga	49	49	B.1.1.177	0.942308
N	204	G204R	Gga	Cga	48	48	B.1.1.343	1
N	204	G204R	Gga	Cga	48	48	B.1.1.524	1
N	204	G204R	Gga	Cga	47	47	AY.4.2.1	0.007002
N	204	G204R	Gga	Cga	47	47	B.1.1.136	1
N	204	G204R	Gga	Cga	47	47	B.1.1.353	0.979167
N	204	G204R	Gga	Cga	47	47	B.1.1.98	0.87037
N	204	G204R	Gga	Cga	46	46	B.1.1.213	1
N	204	G204R	Gga	Cga	45	45	XA	1
N	204	G204R	Gga	Cga	44	44	B.1.1.139	1
N	204	G204R	Gga	Cga	44	44	B.1.1.449	1
N	204	G204R	Gga	Cga	43	43	B.1.1.283	1
N	204	G204R	Gga	Cga	43	43	B.1.1.418	0.977273
N	204	G204R	Gga	Cga	43	43	B.1.1.466	0.373913
N	204	G204R	Gga	Cga	43	43	B.1.1.482	1
N	204	G204R	Gga	Cga	43	43	C.32	1
N	204	G204R	Gga	Cga	42	42	B.1.1.160	1
N	204	G204R	Gga	Cga	42	42	B.1.1.373	1
N	204	G204R	Gga	Cga	42	42	B.1.1.384	1
N	204	G204R	Gga	Cga	42	42	B.1.1.99	1
N	204	G204R	Gga	Cga	42	42	B.1.351	0.001249
N	204	G204R	Gga	Cga	41	41	B.1.1.201	1
N	204	G204R	Gga	Cga	41	41	B.1.1.394	1
N	204	G204R	Gga	Cga	27	39	AY.25	0.000162
N	204	G204R	Gga	Aga	12	39	AY.25	0.000072
N	204	G204R	Gga	Aga	39	39	AY.4.5	0.004192
N	204	G204R	Gga	Cga	39	39	B.1.1.325	1
N	204	G204R	Gga	Cga	39	39	B.1.1.436	1
N	204	G204R	Gga	Cga	39	39	B.1.1.93	1
N	204	G204R	Gga	Cga	39	39	C.13	1
N	204	G204R	Gga	Cga	39	39	M.1	0.906977
N	204	G204R	Gga	Cga	38	38	B.1.1.168	1
N	204	G204R	Gga	Cga	38	38	B.1.173	1
N	204	G204R	Gga	Cga	37	37	C.19	1
N	204	G204R	Gga	Cga	36	36	B.1.1.359	1
N	204	G204R	Gga	Cga	36	36	B.1.1.408	1
N	204	G204R	Gga	Cga	36	36	K.1	0.857143
N	204	G204R	Gga	Cga	35	35	B.1.1.144	1
N	204	G204R	Gga	Cga	35	35	B.1.1.512	1
N	204	G204R	Gga	Cga	35	35	B.1.1.62	0.945946
N	204	G204R	Gga	Cga	35	35	B.1.177.7	0.00577
N	204	G204R	Gga	Cga	34	34	B.1.1.162	1
N	204	G204R	Gga	Cga	34	34	B.1.1.346	1
N	204	G204R	Gga	Cga	34	34	B.1.1.403	0.871795
N	204	G204R	Gga	Cga	34	34	B.1.1.480	0.85
N	204	G204R	Gga	Cga	34	34	B.1.1.97	1
N	204	G204R	Gga	Cga	34	34	N.10	1
N	204	G204R	Gga	Cga	34	34	N.7	1
N	204	G204R	Gga	Cga	33	33	B.1.1.72	1
N	204	G204R	Gga	Cga	33	33	C.9	1
N	204	G204R	Gga	Cga	32	32	B.1.1.332	1
N	204	G204R	Gga	Cga	32	32	B.1.1.352	1
N	204	G204R	Gga	Cga	32	32	B.1.1.360	1
N	204	G204R	Gga	Cga	32	32	B.1.1.379	1
N	204	G204R	Gga	Cga	32	32	N.8	1
N	204	G204R	Gga	Cga	31	31	B.1.1.107	1
N	204	G204R	Gga	Cga	31	31	B.1.1.239	1
N	204	G204R	Gga	Cga	23	31	B.40	0.008379
N	204	G204R	Gga	Aga	8	31	B.40	0.002914
N	204	G204R	Gga	Cga	30	30	AE.3	0.967742
N	204	G204R	Gga	Cga	30	30	AM.3	1
N	204	G204R	Gga	Cga	30	30	B.1.1.120	1
N	204	G204R	Gga	Cga	30	30	B.1.1.166	1
N	204	G204R	Gga	Cga	30	30	B.1.1.92	1
N	204	G204R	Gga	Cga	30	30	C.40	0.833333
N	204	G204R	Gga	Aga	22	29	AY.26	0.000623
N	204	G204R	Gga	Cga	7	29	AY.26	0.000198
N	204	G204R	Gga	Cga	29	29	B.1.1.119	1
N	204	G204R	Gga	Cga	29	29	B.1.1.358	1
N	204	G204R	Gga	Cga	29	29	B.1.1.40	1
N	204	G204R	Gga	Cga	29	29	B.1.1.435	1
N	204	G204R	Gga	Cga	29	29	B.1.1.450	1
N	204	G204R	Gga	Cga	26	29	B.1.36	0.003793
N	204	G204R	Gga	Aga	3	29	B.1.36	0.000438
N	204	G204R	Gga	Cga	29	29	C.36.2	1
N	204	G204R	Gga	Cga	29	29	C.7	1
N	204	G204R	Gga	Cga	29	29	P.1.3	1
N	204	G204R	Gga	Cga	21	28	AY.43	0.000093
N	204	G204R	Gga	Aga	7	28	AY.43	0.000031
N	204	G204R	Gga	Cga	28	28	B.1.1.13	1
N	204	G204R	Gga	Cga	28	28	B.1.1.382	1
N	204	G204R	Gga	Cga	28	28	B.1.1.426	1
N	204	G204R	Gga	Cga	28	28	B.1.1.447	1
N	204	G204R	Gga	Cga	28	28	B.1.1.86	1
N	204	G204R	Gga	Cga	27	27	AC.1	1
N	204	G204R	Gga	Cga	27	27	AF.1	1
N	204	G204R	Gga	Cga	27	27	B.1.1.145	1
N	204	G204R	Gga	Cga	27	27	B.1.1.197	1
N	204	G204R	Gga	Cga	27	27	B.1.1.410	1
N	204	G204R	Gga	Cga	27	27	B.1.1.421	0.818182
N	204	G204R	Gga	Cga	27	27	B.1.1.506	1
N	204	G204R	Gga	Cga	27	27	C.34	1
N	204	G204R	Gga	Cga	27	27	C.6	1
N	204	G204R	Gga	Cga	26	26	AE.6	1
N	204	G204R	Gga	Aga	19	26	AY.102	0.000504
N	204	G204R	Gga	Cga	7	26	AY.102	0.000186
N	204	G204R	Gga	Cga	26	26	B.1.1.451	1
N	204	G204R	Gga	Cga	26	26	B.1.1.483	1
N	204	G204R	Gga	Cga	26	26	B.1.1.514	1
N	204	G204R	Gga	Cga	26	26	B.1.1.82	1
N	204	G204R	Gga	Cga	26	26	B.1.429	0.000612
N	204	G204R	Gga	Cga	26	26	N.2	1
N	204	G204R	Gga	Cga	25	25	B.1.1.100	1
N	204	G204R	Gga	Cga	25	25	B.1.1.109	1
N	204	G204R	Gga	Cga	25	25	B.1.1.152	1
N	204	G204R	Gga	Cga	25	25	B.1.1.154	1
N	204	G204R	Gga	Cga	25	25	B.1.1.350	1
N	204	G204R	Gga	Cga	25	25	B.1.1.381	1
N	204	G204R	Gga	Cga	25	25	C.28	1
N	204	G204R	Gga	Cga	25	25	K.2	1
N	204	G204R	Gga	Aga	15	24	AY.103	0.000093
N	204	G204R	Gga	Cga	9	24	AY.103	0.000056
N	204	G204R	Gga	Cga	24	24	B.1.1.178	1
N	204	G204R	Gga	Cga	24	24	B.1.1.407	1
N	204	G204R	Gga	Cga	24	24	B.1.1.430	1
N	204	G204R	Gga	Cga	24	24	B.1.1.458	1
N	204	G204R	Gga	Cga	24	24	B.1.1.77	1
N	204	G204R	Gga	Cga	23	23	AE.4	1
N	204	G204R	Gga	Cga	23	23	B.1.1.345	1
N	204	G204R	Gga	Cga	22	22	AD.2.1	1
N	204	G204R	Gga	Cga	22	22	AJ.1	1
N	204	G204R	Gga	Cga	22	22	AK.2	1
N	204	G204R	Gga	Cga	22	22	B.1.1.122	1
N	204	G204R	Gga	Cga	22	22	B.1.1.340	1
N	204	G204R	Gga	Cga	22	22	B.1.1.361	1
N	204	G204R	Gga	Cga	22	22	B.1.1.388	1
N	204	G204R	Gga	Cga	22	22	B.1.1.396	1
N	204	G204R	Gga	Cga	22	22	B.1.1.422	1
N	204	G204R	Gga	Cga	22	22	B.1.1.424	1
N	204	G204R	Gga	Cga	21	21	B.1.1.242	0.913043
N	204	G204R	Gga	Cga	21	21	P.1.10.2	0.875
N	204	G204R	Gga	Aga	14	20	AY.39	0.000346
N	204	G204R	Gga	Cga	6	20	AY.39	0.000148
N	204	G204R	Gga	Cga	20	20	B.1.1.190	1
N	204	G204R	Gga	Cga	20	20	B.1.1.400	1
N	204	G204R	Gga	Cga	20	20	B.1.1.415	1
N	204	G204R	Gga	Cga	20	20	B.1.1.425	0.909091
N	204	G204R	Gga	Cga	20	20	B.1.1.438	1
N	204	G204R	Gga	Cga	20	20	B.1.1.441	1
N	204	G204R	Gga	Cga	19	20	B.1.576	0.017226
N	204	G204R	Gga	Aga	1	20	B.1.576	0.000907
N	204	G204R	Gga	Cga	20	20	L.4	1
N	204	G204R	Gga	Cga	12	19	AY.3	0.000119
N	204	G204R	Gga	Aga	7	19	AY.3	0.00007
N	204	G204R	Gga	Cga	19	19	B.1.1.324	1
N	204	G204R	Gga	Cga	19	19	B.1.1.392	1
N	204	G204R	Gga	Cga	19	19	B.1.595	0.004958
N	204	G204R	Gga	Cga	18	18	B.1.1.16	1
N	204	G204R	Gga	Cga	18	18	B.1.1.271	1
N	204	G204R	Gga	Cga	18	18	B.1.1.367	1
N	204	G204R	Gga	Cga	18	18	B.1.1.395	1
N	204	G204R	Gga	Cga	18	18	B.1.1.456	1
N	204	G204R	Gga	Cga	18	18	B.1.595.1	0.105263
N	204	G204R	Gga	Cga	17	17	AE.2	1
N	204	G204R	Gga	Cga	17	17	B.1.1.112	1
N	204	G204R	Gga	Cga	17	17	B.1.1.184	1
N	204	G204R	Gga	Cga	17	17	B.1.1.341	1
N	204	G204R	Gga	Cga	17	17	B.1.1.38	1
N	204	G204R	Gga	Cga	17	17	B.1.1.387	1
N	204	G204R	Gga	Cga	17	17	B.1.160.30	0.050595
N	204	G204R	Gga	Cga	17	17	B.1.580	0.069106
N	204	G204R	Gga	Cga	17	17	B.1.617.1	0.002192
N	204	G204R	Gga	Cga	17	17	C.33	1
N	204	G204R	Gga	Cga	16	16	B.1.1.116	1
N	204	G204R	Gga	Cga	16	16	B.1.1.127	1
N	204	G204R	Gga	Cga	16	16	B.1.1.330	1
N	204	G204R	Gga	Cga	16	16	B.1.1.383	1
N	204	G204R	Gga	Cga	16	16	B.1.1.423	1
N	204	G204R	Gga	Cga	16	16	B.1.1.463	1
N	204	G204R	Gga	Cga	16	16	B.1.632	0.107383
N	204	G204R	Gga	Cga	16	16	C.29	1
N	204	G204R	Gga	Cga	15	15	AG.1	1
N	204	G204R	Gga	Cga	15	15	B.1.1.114	1
N	204	G204R	Gga	Cga	15	15	B.1.1.31	1
N	204	G204R	Gga	Cga	15	15	B.1.1.342	0.9375
N	204	G204R	Gga	Cga	15	15	B.1.1.364	1
N	204	G204R	Gga	Cga	15	15	B.1.1.386	1
N	204	G204R	Gga	Cga	15	15	B.1.1.401	1
N	204	G204R	Gga	Cga	15	15	B.1.1.516	1
N	204	G204R	Gga	Cga	15	15	B.1.1.87	1
N	204	G204R	Gga	Cga	15	15	D.4	1
N	204	G204R	Gga	Aga	9	14	A	0.003483
N	204	G204R	Gga	Cga	5	14	A	0.001935
N	204	G204R	Gga	Cga	14	14	AQ.1	1
N	204	G204R	Gga	Cga	14	14	B.1.1.155	1
N	204	G204R	Gga	Cga	14	14	B.1.1.249	1
N	204	G204R	Gga	Cga	14	14	B.1.1.481	1
N	204	G204R	Gga	Cga	14	14	B.1.1.88	1
N	204	G204R	Gga	Cga	14	14	B.1.165	0.166667
N	204	G204R	Gga	Aga	11	14	B.1.243	0.000765
N	204	G204R	Gga	Cga	3	14	B.1.243	0.000209
N	204	G204R	Gga	Cga	14	14	C.22	1
N	204	G204R	Gga	Cga	11	13	AY.34	0.001067
N	204	G204R	Gga	Aga	2	13	AY.34	0.000194
N	204	G204R	Gga	Cga	13	13	B.1.1.175	1
N	204	G204R	Gga	Cga	13	13	B.1.1.185	1
N	204	G204R	Gga	Cga	13	13	B.1.1.202	1
N	204	G204R	Gga	Cga	13	13	B.1.1.30	1
N	204	G204R	Gga	Cga	13	13	B.1.1.446	1
N	204	G204R	Gga	Cga	13	13	B.1.160.32	0.055794
N	204	G204R	Gga	Cga	10	13	B.1.621	0.000885
N	204	G204R	Gga	Aga	3	13	B.1.621	0.000266
N	204	G204R	Gga	Cga	13	13	C.1.1	1
N	204	G204R	Gga	Cga	13	13	C.20	1
N	204	G204R	Gga	Cga	13	13	M.3	1
N	204	G204R	Gga	Cga	13	13	P.1.5	1
N	204	G204R	Gga	Cga	12	12	AE.7	1
N	204	G204R	Gga	Cga	12	12	AY.101	0.005885
N	204	G204R	Gga	Cga	12	12	B.1.1.405	1
N	204	G204R	Gga	Cga	10	12	B.1.258	0.000665
N	204	G204R	Gga	Aga	2	12	B.1.258	0.000133
N	204	G204R	Gga	Cga	12	12	B.1.525	0.001358
N	204	G204R	Gga	Cga	12	12	B.1.531	1
N	204	G204R	Gga	Cga	12	12	M.2	1
N	204	G204R	Gga	Cga	12	12	Q.7	0.013333
N	204	G204R	Gga	Aga	7	11	AY.29	0.00011
N	204	G204R	Gga	Cga	4	11	AY.29	0.000063
N	204	G204R	Gga	Cga	11	11	B.1.1.110	1
N	204	G204R	Gga	Cga	11	11	B.1.1.147	1
N	204	G204R	Gga	Cga	11	11	B.1.1.182	1
N	204	G204R	Gga	Cga	11	11	B.1.1.399	1
N	204	G204R	Gga	Cga	11	11	B.1.1.84	1
N	204	G204R	Gga	Aga	10	11	B.1.575	0.003034
N	204	G204R	Gga	Cga	1	11	B.1.575	0.000303
N	204	G204R	Gga	Cga	11	11	C.17	0.611111
N	204	G204R	Gga	Cga	8	10	AY.16.1	0.003759
N	204	G204R	Gga	Aga	2	10	AY.16.1	0.00094
N	204	G204R	Gga	Cga	10	10	B.1.1.327	1
N	204	G204R	Gga	Cga	10	10	B.1.1.484	1
N	204	G204R	Gga	Cga	10	10	B.1.1.90	1
N	204	G204R	Gga	Cga	10	10	B.1.564	0.004259
N	204	G204R	Gga	Cga	10	10	C.5	0.909091
N	204	G204R	Gga	Cga	9	9	AM.1	1
N	204	G204R	Gga	Cga	9	9	AM.2	1
N	204	G204R	Gga	Cga	9	9	AQ.2	1
N	204	G204R	Gga	Cga	6	9	AY.30	0.002374
N	204	G204R	Gga	Aga	3	9	AY.30	0.001187
N	204	G204R	Gga	Cga	9	9	B.1.1.193	1
N	204	G204R	Gga	Cga	9	9	B.1.1.393	1
N	204	G204R	Gga	Cga	9	9	B.1.1.452	1
N	204	G204R	Gga	Aga	9	9	B.1.110.3	0.006466
N	204	G204R	Gga	Cga	9	9	B.1.169	0.134328
N	204	G204R	Gga	Cga	7	9	B.1.427	0.000353
N	204	G204R	Gga	Aga	2	9	B.1.427	0.000101
N	204	G204R	Gga	Cga	9	9	B.1.628	0.003171
N	204	G204R	Gga	Cga	6	8	AY.27	0.000388
N	204	G204R	Gga	Aga	2	8	AY.27	0.000129
N	204	G204R	Gga	Cga	7	8	AY.54	0.000667
N	204	G204R	Gga	Aga	1	8	AY.54	0.000095
N	204	G204R	Gga	Cga	8	8	B.1.1.357	1
N	204	G204R	Gga	Cga	8	8	B.1.177.31	0.091954
N	204	G204R	Gga	Cga	8	8	B.1.177.44	0.004152
N	204	G204R	Gga	Cga	8	8	B.1.311	0.002197
N	204	G204R	Gga	Cga	8	8	B.1.411	0.02963
N	204	G204R	Gga	Cga	8	8	C.25	1
N	204	G204R	Gga	Cga	7	7		0.388889
N	204	G204R	Gga	Cga	7	7	AH.1	1
N	204	G204R	Gga	Cga	4	7	AY.42	0.000161
N	204	G204R	Gga	Aga	3	7	AY.42	0.000121
N	204	G204R	Gga	Aga	5	7	AY.5	0.000103
N	204	G204R	Gga	Cga	2	7	AY.5	0.000041
N	204	G204R	Gga	Aga	4	7	AY.9.2	0.000147
N	204	G204R	Gga	Cga	3	7	AY.9.2	0.00011
N	204	G204R	Gga	Cga	7	7	B.1.1.414	1
N	204	G204R	Gga	Cga	7	7	B.1.1.427	1
N	204	G204R	Gga	Cga	7	7	B.1.1.444	1
N	204	G204R	Gga	Cga	5	7	B.1.258.17	0.00052
N	204	G204R	Gga	Aga	2	7	B.1.258.17	0.000208
N	204	G204R	Gga	Cga	7	7	B.1.560	0.032407
N	204	G204R	Gga	Cga	7	7	B.1.623	0.003755
N	204	G204R	Gga	Cga	7	7	C.21	1
N	204	G204R	Gga	Aga	5	6	AY.16	0.001898
N	204	G204R	Gga	Cga	1	6	AY.16	0.00038
N	204	G204R	Gga	Aga	3	6	AY.20	0.000117
N	204	G204R	Gga	Cga	3	6	AY.20	0.000117
N	204	G204R	Gga	Cga	6	6	AY.23	0.000418
N	204	G204R	Gga	Cga	5	6	AY.45	0.000608
N	204	G204R	Gga	Aga	1	6	AY.45	0.000122
N	204	G204R	Gga	Cga	6	6	B.1.1.91	1
N	204	G204R	Gga	Cga	3	6	B.1.177.86	0.00055
N	204	G204R	Gga	Aga	3	6	B.1.177.86	0.00055
N	204	G204R	Gga	Cga	6	6	B.1.206	0.004894
N	204	G204R	Gga	Cga	4	6	B.1.509	0.003463
N	204	G204R	Gga	Aga	2	6	B.1.509	0.001732
N	204	G204R	Gga	Cga	6	6	B.1.538	0.048387
N	204	G204R	Gga	Cga	5	6	B.6	0.00455
N	204	G204R	Gga	Aga	1	6	B.6	0.00091
N	204	G204R	Gga	Aga	3	5	AY.120	0.000112
N	204	G204R	Gga	Cga	2	5	AY.120	0.000074
N	204	G204R	Gga	Cga	5	5	AY.52	0.004072
N	204	G204R	Gga	Cga	5	5	AY.68	0.001369
N	204	G204R	Gga	Aga	5	5	AY.81	0.00996
N	204	G204R	Gga	Cga	5	5	AY.92	0.001436
N	204	G204R	Gga	Cga	5	5	B.1.177.12	0.000758
N	204	G204R	Gga	Cga	4	5	B.1.234	0.000528
N	204	G204R	Gga	Aga	1	5	B.1.234	0.000132
N	204	G204R	Gga	Aga	5	5	B.1.36.8	0.005
N	204	G204R	Gga	Cga	4	5	B.1.362	0.006163
N	204	G204R	Gga	Aga	1	5	B.1.362	0.001541
N	204	G204R	Gga	Aga	3	5	B.1.465	0.011407
N	204	G204R	Gga	Cga	2	5	B.1.465	0.007605
N	204	G204R	Gga	Cga	5	5	B.3	0.004153
N	204	G204R	Gga	Cga	4	4	A.2.5	0.001996
N	204	G204R	Gga	Cga	3	4	AY.100	0.000138
N	204	G204R	Gga	Aga	1	4	AY.100	0.000046
N	204	G204R	Gga	Aga	3	4	AY.113	0.000427
N	204	G204R	Gga	Cga	1	4	AY.113	0.000142
N	204	G204R	Gga	Aga	3	4	AY.119	0.000106
N	204	G204R	Gga	Cga	1	4	AY.119	0.000035
N	204	G204R	Gga	Aga	4	4	AY.14	0.000352
N	204	G204R	Gga	Cga	2	4	AY.3.1	0.000171
N	204	G204R	Gga	Aga	2	4	AY.3.1	0.000171
N	204	G204R	Gga	Cga	3	4	AY.61	0.000314
N	204	G204R	Gga	Aga	1	4	AY.61	0.000105
N	204	G204R	Gga	Aga	2	4	AY.98.1	0.000097
N	204	G204R	Gga	Cga	2	4	AY.98.1	0.000097
N	204	G204R	Gga	Aga	4	4	B.1.177.15	0.002524
N	204	G204R	Gga	Cga	4	4	B.1.179	0.015038
N	204	G204R	Gga	Aga	2	4	B.1.36.36	0.001204
N	204	G204R	Gga	Cga	2	4	B.1.36.36	0.001204
N	204	G204R	Gga	Cga	4	4	B.1.378	0.027397
N	204	G204R	Gga	Cga	3	4	B.1.416	0.003807
N	204	G204R	Gga	Aga	1	4	B.1.416	0.001269
N	204	G204R	Gga	Cga	4	4	B.1.637	0.000292
N	204	G204R	Gga	Cga	4	4	C.10	1
N	204	G204R	Gga	Aga	2	3	AY.24	0.000862
N	204	G204R	Gga	Cga	1	3	AY.24	0.000431
N	204	G204R	Gga	Aga	2	3	AY.47	0.000062
N	204	G204R	Gga	Cga	1	3	AY.47	0.000031
N	204	G204R	Gga	Cga	3	3	AY.75.1	0.000541
N	204	G204R	Gga	Cga	3	3	B.1.128	0.001906
N	204	G204R	Gga	Cga	3	3	B.1.139	0.002199
N	204	G204R	Gga	Cga	3	3	B.1.177.52	0.005272
N	204	G204R	Gga	Cga	3	3	B.1.210	0.006397
N	204	G204R	Gga	Cga	3	3	B.1.247	0.044776
N	204	G204R	Gga	Cga	3	3	B.1.284	0.039474
N	204	G204R	Gga	Aga	3	3	B.1.340	0.012876
N	204	G204R	Gga	Cga	3	3	B.1.351.3	0.002629
N	204	G204R	Gga	Aga	3	3	B.1.36.27	0.00229
N	204	G204R	Gga	Cga	3	3	B.1.367	0.002377
N	204	G204R	Gga	Cga	3	3	B.1.396	0.002117
N	204	G204R	Gga	Aga	3	3	B.1.400	0.001287
N	204	G204R	Gga	Cga	3	3	B.1.459	0.012245
N	204	G204R	Gga	Cga	3	3	B.1.612	0.007958
N	204	G204R	Gga	Cga	3	3	B.1.620	0.002838
N	204	G204R	Gga	Cga	3	3	B.1.94	0.081081
N	204	G204R	Gga	Cga	2	2	A.1	0.000564
N	204	G204R	Gga	Cga	2	2	AM.4	0.007143
N	204	G204R	Gga	Cga	2	2	AY.118	0.000125
N	204	G204R	Gga	Cga	1	2	AY.13	0.000161
N	204	G204R	Gga	Aga	1	2	AY.13	0.000161
N	204	G204R	Gga	Cga	1	2	AY.39.1	0.00004
N	204	G204R	Gga	Aga	1	2	AY.39.1	0.00004
N	204	G204R	Gga	Aga	2	2	AY.4.2	0.000043
N	204	G204R	Gga	Aga	2	2	AY.9	0.000135
N	204	G204R	Gga	Cga	2	2	AY.95	0.001522
N	204	G204R	Gga	Cga	2	2	B.1.131	0.017544
N	204	G204R	Gga	Cga	2	2	B.1.149	0.006849
N	204	G204R	Gga	Cga	2	2	B.1.170	0.008621
N	204	G204R	Gga	Cga	2	2	B.1.177.17	0.001642
N	204	G204R	Gga	Cga	2	2	B.1.177.56	0.001335
N	204	G204R	Gga	Cga	2	2	B.1.177.75	0.002081
N	204	G204R	Gga	Cga	2	2	B.1.201	0.011364
N	204	G204R	Gga	Cga	2	2	B.1.235	0.005038
N	204	G204R	Gga	Aga	1	2	B.1.240	0.000216
N	204	G204R	Gga	Cga	1	2	B.1.240	0.000216
N	204	G204R	Gga	Cga	2	2	B.1.349	0.00143
N	204	G204R	Gga	Cga	2	2	B.1.356	0.003454
N	204	G204R	Gga	Cga	2	2	B.1.36.1	0.002281
N	204	G204R	Gga	Cga	2	2	B.1.36.38	0.003284
N	204	G204R	Gga	Cga	2	2	B.1.371	0.002245
N	204	G204R	Gga	Cga	2	2	B.1.381	0.015625
N	204	G204R	Gga	Cga	2	2	B.1.416.1	0.003125
N	204	G204R	Gga	Cga	2	2	B.1.438.1	0.000215
N	204	G204R	Gga	Cga	1	2	B.1.468	0.005714
N	204	G204R	Gga	Aga	1	2	B.1.468	0.005714
N	204	G204R	Gga	Cga	2	2	B.1.470	0.002809
N	204	G204R	Gga	Cga	1	2	B.1.517	0.000427
N	204	G204R	Gga	Aga	1	2	B.1.517	0.000427
N	204	G204R	Gga	Cga	2	2	B.1.524	0.002813
N	204	G204R	Gga	Cga	2	2	B.1.581	0.018868
N	204	G204R	Gga	Cga	2	2	B.1.609	0.000959
N	204	G204R	Gga	Cga	2	2	B.1.627	0.00404
N	204	G204R	Gga	Cga	2	2	B.15	0.035088
N	204	G204R	Gga	Cga	2	2	B.60	0.031746
N	204	G204R	Gga	Cga	1	1	A.2	0.000662
N	204	G204R	Gga	Cga	1	1	A.2.5.2	0.001572
N	204	G204R	Gga	Cga	1	1	AA.1	0.007246
N	204	G204R	Gga	Aga	1	1	AU.3	0.00211
N	204	G204R	Gga	Cga	1	1	AY.105	0.000643
N	204	G204R	Gga	Cga	1	1	AY.107	0.000466
N	204	G204R	Gga	Aga	1	1	AY.108	0.001103
N	204	G204R	Gga	Aga	1	1	AY.109	0.00074
N	204	G204R	Gga	Cga	1	1	AY.110	0.000113
N	204	G204R	Gga	Aga	1	1	AY.111	0.000183
N	204	G204R	Gga	Cga	1	1	AY.116	0.000287
N	204	G204R	Gga	Aga	1	1	AY.12	0.000316
N	204	G204R	Gga	Cga	1	1	AY.120.1	0.000321
N	204	G204R	Gga	Cga	1	1	AY.2	0.000356
N	204	G204R	Gga	Aga	1	1	AY.29.1	0.000221
N	204	G204R	Gga	Aga	1	1	AY.36	0.000148
N	204	G204R	Gga	Aga	1	1	AY.41	0.000294
N	204	G204R	Gga	Aga	1	1	AY.46	0.000104
N	204	G204R	Gga	Aga	1	1	AY.46.6	0.000072
N	204	G204R	Gga	Cga	1	1	AY.55	0.000917
N	204	G204R	Gga	Aga	1	1	AY.57	0.000656
N	204	G204R	Gga	Cga	1	1	AY.59	0.00053
N	204	G204R	Gga	Aga	1	1	AY.6	0.000041
N	204	G204R	Gga	Cga	1	1	AY.65	0.000533
N	204	G204R	Gga	Aga	1	1	AY.69	0.000187
N	204	G204R	Gga	Cga	1	1	AY.75	0.000056
N	204	G204R	Gga	Cga	1	1	AY.77	0.001127
N	204	G204R	Gga	Cga	1	1	AY.9.1	0.000084
N	204	G204R	Gga	Cga	1	1	AY.99	0.001049
N	204	G204R	Gga	Aga	1	1	AY.99.1	0.001553
N	204	G204R	Gga	Cga	1	1	AY.99.2	0.000092
N	204	G204R	Gga	Cga	1	1	B.1.104	0.00369
N	204	G204R	Gga	Cga	1	1	B.1.110.2	0.166667
N	204	G204R	Gga	Cga	1	1	B.1.147	0.000756
N	204	G204R	Gga	Cga	1	1	B.1.157	0.002985
N	204	G204R	Gga	Cga	1	1	B.1.160.16	0.000929
N	204	G204R	Gga	Cga	1	1	B.1.177.19	0.001431
N	204	G204R	Gga	Cga	1	1	B.1.177.33	0.001645
N	204	G204R	Gga	Cga	1	1	B.1.177.4	0.000211
N	204	G204R	Gga	Cga	1	1	B.1.177.50	0.004695
N	204	G204R	Gga	Cga	1	1	B.1.177.51	0.004566
N	204	G204R	Gga	Cga	1	1	B.1.177.53	0.002392
N	204	G204R	Gga	Cga	1	1	B.1.177.57	0.000281
N	204	G204R	Gga	Cga	1	1	B.1.177.58	0.001332
N	204	G204R	Gga	Cga	1	1	B.1.177.67	0.007634
N	204	G204R	Gga	Cga	1	1	B.1.177.82	0.000477
N	204	G204R	Gga	Cga	1	1	B.1.177.83	0.001481
N	204	G204R	Gga	Cga	1	1	B.1.187	0.033333
N	204	G204R	Gga	Aga	1	1	B.1.199	0.004132
N	204	G204R	Gga	Cga	1	1	B.1.214	0.003663
N	204	G204R	Gga	Cga	1	1	B.1.214.2	0.0006
N	204	G204R	Gga	Cga	1	1	B.1.215	0.009615
N	204	G204R	Gga	Cga	1	1	B.1.223	0.002778
N	204	G204R	Gga	Aga	1	1	B.1.232	0.000537
N	204	G204R	Gga	Cga	1	1	B.1.237	0.004975
N	204	G204R	Gga	Cga	1	1	B.1.239	0.001221
N	204	G204R	Gga	Aga	1	1	B.1.241	0.000812
N	204	G204R	Gga	Aga	1	1	B.1.258.11	0.000396
N	204	G204R	Gga	Aga	1	1	B.1.258.3	0.001675
N	204	G204R	Gga	Cga	1	1	B.1.301	0.005917
N	204	G204R	Gga	Cga	1	1	B.1.315	0.006061
N	204	G204R	Gga	Cga	1	1	B.1.326	0.007576
N	204	G204R	Gga	Cga	1	1	B.1.333	0.010526
N	204	G204R	Gga	Cga	1	1	B.1.336	0.002439
N	204	G204R	Gga	Cga	1	1	B.1.35	0.008475
N	204	G204R	Gga	Cga	1	1	B.1.351.2	0.000303
N	204	G204R	Gga	Cga	1	1	B.1.36.10	0.004785
N	204	G204R	Gga	Cga	1	1	B.1.36.17	0.000494
N	204	G204R	Gga	Cga	1	1	B.1.36.2	0.010753
N	204	G204R	Gga	Cga	1	1	B.1.36.28	0.005747
N	204	G204R	Gga	Cga	1	1	B.1.36.39	0.002217
N	204	G204R	Gga	Cga	1	1	B.1.389	0.001002
N	204	G204R	Gga	Cga	1	1	B.1.393	0.028571
N	204	G204R	Gga	Cga	1	1	B.1.397	0.004854
N	204	G204R	Gga	Cga	1	1	B.1.404	0.001302
N	204	G204R	Gga	Cga	1	1	B.1.406	0.006061
N	204	G204R	Gga	Cga	1	1	B.1.413	0.004255
N	204	G204R	Gga	Cga	1	1	B.1.428	0.00102
N	204	G204R	Gga	Cga	1	1	B.1.432	0.011236
N	204	G204R	Gga	Cga	1	1	B.1.433	0.003195
N	204	G204R	Gga	Aga	1	1	B.1.441	0.009615
N	204	G204R	Gga	Cga	1	1	B.1.485	0.014925
N	204	G204R	Gga	Cga	1	1	B.1.530	0.007143
N	204	G204R	Gga	Cga	1	1	B.1.540	0.009709
N	204	G204R	Gga	Cga	1	1	B.1.557	0.05
N	204	G204R	Gga	Cga	1	1	B.1.565	0.00081
N	204	G204R	Gga	Cga	1	1	B.1.578	0.017857
N	204	G204R	Gga	Cga	1	1	B.1.582	0.000491
N	204	G204R	Gga	Cga	1	1	B.1.599	0.00365
N	204	G204R	Gga	Cga	1	1	B.1.600	0.005848
N	204	G204R	Gga	Cga	1	1	B.1.605	0.005952
N	204	G204R	Gga	Cga	1	1	B.1.606	0.006024
N	204	G204R	Gga	Cga	1	1	B.1.617.3	0.002985
N	204	G204R	Gga	Cga	1	1	B.1.619	0.000871
N	204	G204R	Gga	Cga	1	1	B.1.634	0.003425
N	204	G204R	Gga	Cga	1	1	B.1.78	0.008547
N	204	G204R	Gga	Cga	1	1	B.1.81	0.021277
N	204	G204R	Gga	Cga	1	1	B.1.91	0.002075
N	204	G204R	Gga	Cga	1	1	B.29	0.003509
N	204	G204R	Gga	Cga	1	1	B.3.1	0.001658
N	204	G204R	Gga	Aga	1	1	B.4	0.002208
N	204	G204R	Gga	Aga	1	1	B.4.7	0.010101
N	204	G204R	Gga	Cga	1	1	B.52	0.010101
N	204	G204R	Gga	Aga	1	1	B.55	0.00295
N	204	G204R	Gga	Aga	1	1	B.6.6	0.000889

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.