CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = N : Mut = G19G

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
N	19	G19G		syn	ggA	ggG	3380	3367	0.996154	28328-28330
N	19	G19G		syn	ggA	ggC	3380	9	0.00266272	28328-28330
N	19	G19G		syn	ggA	ggT	3380	4	0.00118343	28328-28330

Details of the mutation G19G within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
N	19	G19G	ggA	ggG	3367	3380	All	0.000644
N	19	G19G	ggA	ggC	9	3380	All	0.000002
N	19	G19G	ggA	ggT	4	3380	All	0.000001
N	19	G19G	ggA	ggG	2759	2759	B.1.628	0.972163
N	19	G19G	ggA	ggG	290	290	B.1.631	0.976431
N	19	G19G	ggA	ggG	86	86	B.1	0.000788
N	19	G19G	ggA	ggG	33	33	AY.25	0.000198
N	19	G19G	ggA	ggG	33	33	P.1	0.00052
N	19	G19G	ggA	ggG	26	32	AY.3	0.000259
N	19	G19G	ggA	ggC	6	32	AY.3	0.00006
N	19	G19G	ggA	ggG	20	21	B.1.1.7	0.000018
N	19	G19G	ggA	ggC	1	21	B.1.1.7	0.000001
N	19	G19G	ggA	ggG	16	16	B.1.627	0.032323
N	19	G19G	ggA	ggG	15	15	B.1.617.2	0.000056
N	19	G19G	ggA	ggG	12	12	P.1.12	0.005808
N	19	G19G	ggA	ggG	10	10	B.1.2	0.000088
N	19	G19G	ggA	ggG	5	6	AY.44	0.00003
N	19	G19G	ggA	ggC	1	6	AY.44	0.000006
N	19	G19G	ggA	ggG	6	6	B.1.1	0.000109
N	19	G19G	ggA	ggG	4	4	AY.103	0.000025
N	19	G19G	ggA	ggG	4	4	AY.43	0.000018
N	19	G19G	ggA	ggG	4	4	C.37	0.000464
N	19	G19G	ggA	ggG	3	3	AY.39.1	0.000119
N	19	G19G	ggA	ggG	2	3	B.1.596	0.000174
N	19	G19G	ggA	ggC	1	3	B.1.596	0.000087
N	19	G19G	ggA	ggG	2	2	AY.117	0.000169
N	19	G19G	ggA	ggG	2	2	AY.26	0.000057
N	19	G19G	ggA	ggG	2	2	B	0.000256
N	19	G19G	ggA	ggG	2	2	B.1.429	0.000047
N	19	G19G	ggA	ggG	2	2	B.1.474	0.003802
N	19	G19G	ggA	ggG	1	1	AY.100	0.000046
N	19	G19G	ggA	ggG	1	1	AY.110	0.000113
N	19	G19G	ggA	ggG	1	1	AY.113	0.000142
N	19	G19G	ggA	ggG	1	1	AY.114	0.000231
N	19	G19G	ggA	ggG	1	1	AY.116	0.000287
N	19	G19G	ggA	ggG	1	1	AY.118	0.000063
N	19	G19G	ggA	ggG	1	1	AY.119	0.000035
N	19	G19G	ggA	ggG	1	1	AY.120	0.000037
N	19	G19G	ggA	ggG	1	1	AY.14	0.000088
N	19	G19G	ggA	ggG	1	1	AY.27	0.000065
N	19	G19G	ggA	ggG	1	1	AY.3.1	0.000085
N	19	G19G	ggA	ggG	1	1	AY.39.2	0.001541
N	19	G19G	ggA	ggT	1	1	AY.4	0.000002
N	19	G19G	ggA	ggG	1	1	AY.4.2	0.000022
N	19	G19G	ggA	ggG	1	1	AY.6	0.000041
N	19	G19G	ggA	ggG	1	1	AY.61	0.000105
N	19	G19G	ggA	ggG	1	1	AY.73	0.000665
N	19	G19G	ggA	ggT	1	1	AY.75.1	0.00018
N	19	G19G	ggA	ggG	1	1	AY.9.2	0.000037
N	19	G19G	ggA	ggG	1	1	AY.96	0.002075
N	19	G19G	ggA	ggG	1	1	B.1.177	0.000013
N	19	G19G	ggA	ggG	1	1	B.1.232	0.000537
N	19	G19G	ggA	ggT	1	1	B.1.234	0.000132
N	19	G19G	ggA	ggG	1	1	B.1.247	0.014925
N	19	G19G	ggA	ggG	1	1	B.1.36.10	0.004785
N	19	G19G	ggA	ggG	1	1	B.1.369	0.000285
N	19	G19G	ggA	ggT	1	1	B.1.595.1	0.005848
N	19	G19G	ggA	ggG	1	1	B.1.618	0.004032
N	19	G19G	ggA	ggG	1	1	B.1.621	0.000089
N	19	G19G	ggA	ggG	1	1	B.3	0.000831
N	19	G19G	ggA	ggG	1	1	B.55	0.00295
N	19	G19G	ggA	ggG	1	1	D.2	0.000075
N	19	G19G	ggA	ggG	1	1	Q.1	0.000126

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.