CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = N : Mut = G116G

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
N	116	G116G		syn	ggG	ggT	3851	2100	0.545313	28619-28621
N	116	G116G		syn	ggG	ggA	3851	1747	0.453648	28619-28621
N	116	G116G		syn	ggG	ggC	3851	4	0.00103869	28619-28621

Details of the mutation G116G within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
N	116	G116G	ggG	ggT	2100	3851	All	0.000402
N	116	G116G	ggG	ggA	1747	3851	All	0.000334
N	116	G116G	ggG	ggC	4	3851	All	0.000001
N	116	G116G	ggG	ggT	859	859	AY.27	0.055595
N	116	G116G	ggG	ggT	548	724	B.1.1.7	0.000491
N	116	G116G	ggG	ggA	176	724	B.1.1.7	0.000158
N	116	G116G	ggG	ggA	483	483	B.1.516	0.945205
N	116	G116G	ggG	ggA	322	322	AY.92	0.092502
N	116	G116G	ggG	ggA	83	127	AY.4	0.000129
N	116	G116G	ggG	ggT	43	127	AY.4	0.000067
N	116	G116G	ggG	ggC	1	127	AY.4	0.000002
N	116	G116G	ggG	ggT	126	126	B.1.147	0.095238
N	116	G116G	ggG	ggA	114	115	B.1.1.214	0.006322
N	116	G116G	ggG	ggT	1	115	B.1.1.214	0.000055
N	116	G116G	ggG	ggT	54	98	B.1.617.2	0.000203
N	116	G116G	ggG	ggA	43	98	B.1.617.2	0.000162
N	116	G116G	ggG	ggC	1	98	B.1.617.2	0.000004
N	116	G116G	ggG	ggA	61	80	B.1	0.000559
N	116	G116G	ggG	ggT	19	80	B.1	0.000174
N	116	G116G	ggG	ggA	74	74	B.1.579	0.831461
N	116	G116G	ggG	ggT	34	57	B.1.177	0.000448
N	116	G116G	ggG	ggA	23	57	B.1.177	0.000303
N	116	G116G	ggG	ggT	31	52	AY.43	0.000137
N	116	G116G	ggG	ggA	21	52	AY.43	0.000093
N	116	G116G	ggG	ggA	27	46	AY.44	0.000164
N	116	G116G	ggG	ggT	19	46	AY.44	0.000116
N	116	G116G	ggG	ggT	38	40	AY.102	0.001008
N	116	G116G	ggG	ggA	2	40	AY.102	0.000053
N	116	G116G	ggG	ggT	35	38	B.1.429	0.000824
N	116	G116G	ggG	ggA	3	38	B.1.429	0.000071
N	116	G116G	ggG	ggA	35	35	B.1.177.79	0.081967
N	116	G116G	ggG	ggA	33	33	B.1.177.46	0.030303
N	116	G116G	ggG	ggA	19	27	AY.25	0.000114
N	116	G116G	ggG	ggT	8	27	AY.25	0.000048
N	116	G116G	ggG	ggT	14	25	P.1	0.000221
N	116	G116G	ggG	ggA	11	25	P.1	0.000173
N	116	G116G	ggG	ggA	13	24	B.1.2	0.000114
N	116	G116G	ggG	ggT	11	24	B.1.2	0.000097
N	116	G116G	ggG	ggT	15	19	AY.103	0.000093
N	116	G116G	ggG	ggA	4	19	AY.103	0.000025
N	116	G116G	ggG	ggA	17	19	AY.36	0.00252
N	116	G116G	ggG	ggT	2	19	AY.36	0.000296
N	116	G116G	ggG	ggA	16	19	AY.39	0.000395
N	116	G116G	ggG	ggT	3	19	AY.39	0.000074
N	116	G116G	ggG	ggT	13	17	AY.98.1	0.00063
N	116	G116G	ggG	ggA	4	17	AY.98.1	0.000194
N	116	G116G	ggG	ggT	17	17	B.1.177.85	0.092391
N	116	G116G	ggG	ggT	15	16	B.1.595	0.003914
N	116	G116G	ggG	ggA	1	16	B.1.595	0.000261
N	116	G116G	ggG	ggA	15	15	B.1.258.17	0.00156
N	116	G116G	ggG	ggT	13	14	AY.3	0.000129
N	116	G116G	ggG	ggA	1	14	AY.3	0.00001
N	116	G116G	ggG	ggT	10	14	B.1.1	0.000181
N	116	G116G	ggG	ggA	4	14	B.1.1	0.000073
N	116	G116G	ggG	ggA	9	12	B.1.526	0.000212
N	116	G116G	ggG	ggT	3	12	B.1.526	0.000071
N	116	G116G	ggG	ggT	10	10	B.1.128	0.006353
N	116	G116G	ggG	ggA	8	10	B.1.525	0.000905
N	116	G116G	ggG	ggT	2	10	B.1.525	0.000226
N	116	G116G	ggG	ggT	6	8	AY.20	0.000233
N	116	G116G	ggG	ggA	2	8	AY.20	0.000078
N	116	G116G	ggG	ggA	7	8	AY.46	0.000729
N	116	G116G	ggG	ggT	1	8	AY.46	0.000104
N	116	G116G	ggG	ggA	5	8	AY.9	0.000338
N	116	G116G	ggG	ggT	3	8	AY.9	0.000203
N	116	G116G	ggG	ggT	6	7	AY.4.2.1	0.000894
N	116	G116G	ggG	ggA	1	7	AY.4.2.1	0.000149
N	116	G116G	ggG	ggA	6	6	AY.14	0.000528
N	116	G116G	ggG	ggT	6	6	AY.23	0.000418
N	116	G116G	ggG	ggT	6	6	AY.7.1	0.000676
N	116	G116G	ggG	ggA	6	6	Q.3	0.00087
N	116	G116G	ggG	ggT	4	5	AY.119	0.000141
N	116	G116G	ggG	ggA	1	5	AY.119	0.000035
N	116	G116G	ggG	ggT	4	5	AY.26	0.000113
N	116	G116G	ggG	ggA	1	5	AY.26	0.000028
N	116	G116G	ggG	ggT	5	5	AY.29	0.000079
N	116	G116G	ggG	ggT	4	5	AY.33	0.000267
N	116	G116G	ggG	ggA	1	5	AY.33	0.000067
N	116	G116G	ggG	ggA	5	5	B.1.1.189	0.007564
N	116	G116G	ggG	ggA	5	5	B.1.110.3	0.003592
N	116	G116G	ggG	ggA	3	5	B.1.243	0.000209
N	116	G116G	ggG	ggT	2	5	B.1.243	0.000139
N	116	G116G	ggG	ggT	5	5	B.1.366	0.02439
N	116	G116G	ggG	ggT	3	5	B.1.427	0.000151
N	116	G116G	ggG	ggA	2	5	B.1.427	0.000101
N	116	G116G	ggG	ggT	4	4		0.222222
N	116	G116G	ggG	ggT	4	4	AY.100	0.000184
N	116	G116G	ggG	ggT	4	4	B.1.1.216	0.003562
N	116	G116G	ggG	ggT	4	4	B.1.1.222	0.000816
N	116	G116G	ggG	ggT	4	4	B.1.1.67	0.018265
N	116	G116G	ggG	ggT	3	4	B.1.258	0.0002
N	116	G116G	ggG	ggA	1	4	B.1.258	0.000067
N	116	G116G	ggG	ggT	3	4	P.1.14	0.000143
N	116	G116G	ggG	ggA	1	4	P.1.14	0.000048
N	116	G116G	ggG	ggA	2	3	A	0.000774
N	116	G116G	ggG	ggT	1	3	A	0.000387
N	116	G116G	ggG	ggA	3	3	AY.105	0.001929
N	116	G116G	ggG	ggA	3	3	AY.113	0.000427
N	116	G116G	ggG	ggA	3	3	AY.116	0.00086
N	116	G116G	ggG	ggT	3	3	AY.16	0.001139
N	116	G116G	ggG	ggA	2	3	AY.40	0.001929
N	116	G116G	ggG	ggC	1	3	AY.40	0.000964
N	116	G116G	ggG	ggT	3	3	AY.45	0.000365
N	116	G116G	ggG	ggA	2	3	AY.47	0.000062
N	116	G116G	ggG	ggT	1	3	AY.47	0.000031
N	116	G116G	ggG	ggA	2	3	AY.9.2	0.000073
N	116	G116G	ggG	ggT	1	3	AY.9.2	0.000037
N	116	G116G	ggG	ggT	3	3	AY.98	0.000237
N	116	G116G	ggG	ggA	3	3	B.1.1.170	0.003741
N	116	G116G	ggG	ggA	3	3	B.1.1.298	0.002586
N	116	G116G	ggG	ggA	2	3	B.1.160	0.000062
N	116	G116G	ggG	ggT	1	3	B.1.160	0.000031
N	116	G116G	ggG	ggA	3	3	B.1.177.7	0.000495
N	116	G116G	ggG	ggA	3	3	B.1.182	0.021739
N	116	G116G	ggG	ggT	3	3	B.1.240	0.000647
N	116	G116G	ggG	ggT	2	3	B.1.351	0.000059
N	116	G116G	ggG	ggA	1	3	B.1.351	0.00003
N	116	G116G	ggG	ggT	3	3	B.1.36.16	0.004274
N	116	G116G	ggG	ggT	3	3	B.1.396	0.002117
N	116	G116G	ggG	ggA	2	2	AY.111	0.000366
N	116	G116G	ggG	ggT	2	2	AY.34	0.000194
N	116	G116G	ggG	ggA	1	2	AY.4.2	0.000022
N	116	G116G	ggG	ggT	1	2	AY.4.2	0.000022
N	116	G116G	ggG	ggT	1	2	AY.42	0.00004
N	116	G116G	ggG	ggA	1	2	AY.42	0.00004
N	116	G116G	ggG	ggA	2	2	AY.68	0.000547
N	116	G116G	ggG	ggA	2	2	AY.9.2.1	0.003953
N	116	G116G	ggG	ggT	2	2	AY.95	0.001522
N	116	G116G	ggG	ggA	2	2	B	0.000256
N	116	G116G	ggG	ggT	2	2	B.1.1.237	0.010811
N	116	G116G	ggG	ggT	1	2	B.1.1.294	0.001266
N	116	G116G	ggG	ggA	1	2	B.1.1.294	0.001266
N	116	G116G	ggG	ggT	2	2	B.1.1.335	0.025974
N	116	G116G	ggG	ggT	2	2	B.1.177.6	0.001953
N	116	G116G	ggG	ggA	2	2	B.1.177.60	0.000437
N	116	G116G	ggG	ggT	2	2	B.1.22	0.002635
N	116	G116G	ggG	ggA	1	2	B.1.221	0.000071
N	116	G116G	ggG	ggT	1	2	B.1.221	0.000071
N	116	G116G	ggG	ggA	1	2	B.1.265	0.001271
N	116	G116G	ggG	ggT	1	2	B.1.265	0.001271
N	116	G116G	ggG	ggA	2	2	B.1.349	0.00143
N	116	G116G	ggG	ggT	2	2	B.1.36.29	0.001035
N	116	G116G	ggG	ggT	2	2	B.1.36.39	0.004435
N	116	G116G	ggG	ggT	2	2	B.1.617.3	0.00597
N	116	G116G	ggG	ggA	2	2	B.1.637	0.000146
N	116	G116G	ggG	ggT	1	1	AY.101	0.00049
N	116	G116G	ggG	ggA	1	1	AY.118	0.000063
N	116	G116G	ggG	ggA	1	1	AY.120	0.000037
N	116	G116G	ggG	ggT	1	1	AY.121	0.000135
N	116	G116G	ggG	ggA	1	1	AY.21	0.001898
N	116	G116G	ggG	ggA	1	1	AY.3.1	0.000085
N	116	G116G	ggG	ggA	1	1	AY.30	0.000396
N	116	G116G	ggG	ggA	1	1	AY.5	0.000021
N	116	G116G	ggG	ggT	1	1	AY.5.3	0.000337
N	116	G116G	ggG	ggT	1	1	AY.6	0.000041
N	116	G116G	ggG	ggT	1	1	AY.70	0.000209
N	116	G116G	ggG	ggA	1	1	AY.75	0.000056
N	116	G116G	ggG	ggT	1	1	AY.75.1	0.00018
N	116	G116G	ggG	ggT	1	1	AY.84	0.000437
N	116	G116G	ggG	ggA	1	1	AY.99.2	0.000092
N	116	G116G	ggG	ggT	1	1	B.1.1.1	0.000327
N	116	G116G	ggG	ggA	1	1	B.1.1.10	0.001115
N	116	G116G	ggG	ggT	1	1	B.1.1.161	0.003534
N	116	G116G	ggG	ggA	1	1	B.1.1.25	0.000569
N	116	G116G	ggG	ggT	1	1	B.1.1.284	0.000107
N	116	G116G	ggG	ggT	1	1	B.1.1.306	0.000438
N	116	G116G	ggG	ggT	1	1	B.1.1.347	0.018182
N	116	G116G	ggG	ggT	1	1	B.1.1.369	0.000446
N	116	G116G	ggG	ggT	1	1	B.1.1.372	0.000689
N	116	G116G	ggG	ggA	1	1	B.1.1.397	0.002252
N	116	G116G	ggG	ggT	1	1	B.1.1.412	0.007634
N	116	G116G	ggG	ggT	1	1	B.1.1.432	0.001266
N	116	G116G	ggG	ggT	1	1	B.1.1.448	0.002033
N	116	G116G	ggG	ggA	1	1	B.1.1.51	0.001718
N	116	G116G	ggG	ggT	1	1	B.1.1.519	0.00004
N	116	G116G	ggG	ggA	1	1	B.1.1.56	0.017857
N	116	G116G	ggG	ggC	1	1	B.1.1.70	0.000341
N	116	G116G	ggG	ggA	1	1	B.1.1.8	0.003584
N	116	G116G	ggG	ggA	1	1	B.1.177.11	0.001698
N	116	G116G	ggG	ggA	1	1	B.1.177.42	0.000894
N	116	G116G	ggG	ggT	1	1	B.1.177.81	0.000189
N	116	G116G	ggG	ggA	1	1	B.1.206	0.000816
N	116	G116G	ggG	ggT	1	1	B.1.210	0.002132
N	116	G116G	ggG	ggA	1	1	B.1.232	0.000537
N	116	G116G	ggG	ggT	1	1	B.1.234	0.000132
N	116	G116G	ggG	ggA	1	1	B.1.279	0.000514
N	116	G116G	ggG	ggT	1	1	B.1.351.3	0.000876
N	116	G116G	ggG	ggT	1	1	B.1.398	0.002976
N	116	G116G	ggG	ggT	1	1	B.1.409	0.000781
N	116	G116G	ggG	ggA	1	1	B.1.499	0.00105
N	116	G116G	ggG	ggA	1	1	B.1.517	0.000427
N	116	G116G	ggG	ggA	1	1	B.1.564	0.000426
N	116	G116G	ggG	ggA	1	1	B.1.575	0.000303
N	116	G116G	ggG	ggA	1	1	B.1.9.5	0.005682
N	116	G116G	ggG	ggT	1	1	B.3.1	0.001658
N	116	G116G	ggG	ggA	1	1	C.35	0.000774
N	116	G116G	ggG	ggA	1	1	C.37	0.000116
N	116	G116G	ggG	ggT	1	1	D.2	0.000075
N	116	G116G	ggG	ggA	1	1	L.1	0.001905
N	116	G116G	ggG	ggT	1	1	P.1.1	0.000318
N	116	G116G	ggG	ggT	1	1	Q.4	0.000455
N	116	G116G	ggG	ggT	1	1	Q.8	0.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.