CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : Mut = F110F

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N110F110FsynttCttT2398323983128601-28603

Details of the mutation F110F within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N110F110FttCttT2398323983All0.004587
N110F110FttCttT61496149P.1.170.994662
N110F110FttCttT34283428B.1.1.70.003069
N110F110FttCttT27062706AY.40.004212
N110F110FttCttT11381138P.1.17.10.995626
N110F110FttCttT907907B.1.617.20.003415
N110F110FttCttT734734B.1.20.006463
N110F110FttCttT425425P.10.006695
N110F110FttCttT365365P.1.140.017447
N110F110FttCttT356356AY.250.002141
N110F110FttCttT315315B.10.002885
N110F110FttCttT293293AY.430.001298
N110F110FttCttT290290B.1.10.005261
N110F110FttCttT288288AY.940.12749
N110F110FttCttT250250AY.30.002487
N110F110FttCttT248248B.1.1770.003266
N110F110FttCttT217217B.1.1.4291
N110F110FttCttT195195AY.330.013022
N110F110FttCttT191191AY.200.007423
N110F110FttCttT176176AY.440.001071
N110F110FttCttT167167AY.1030.001037
N110F110FttCttT156156B.1.1600.004865
N110F110FttCttT140140B.1.6280.049331
N110F110FttCttT136136C.360.123862
N110F110FttCttT131131B.1.3510.003894
N110F110FttCttT117117B.1.4290.002753
N110F110FttCttT116116AY.260.003284
N110F110FttCttT107107B.1.1.3170.044051
N110F110FttCttT106106B.1.2340.013986
N110F110FttCttT9797AY.60.003989
N110F110FttCttT9494B.1.3901
N110F110FttCttT9393C.1.20.395745
N110F110FttCttT8787B.1.1.2160.077471
N110F110FttCttT8080B.1.1.2220.01632
N110F110FttCttT7979B.1.360.011526
N110F110FttCttT7777B.1.1.2990.939024
N110F110FttCttT7676AY.90.005137
N110F110FttCttT7575AY.540.007151
N110F110FttCttT7474AY.50.001528
N110F110FttCttT7272B.1.2430.00501
N110F110FttCttT7171B.1.5260.001669
N110F110FttCttT7171B.1.6100.251773
N110F110FttCttT6969B.1.3630.896104
N110F110FttCttT6868B.1.177.210.0052
N110F110FttCttT6666B.1.1.5190.002621
N110F110FttCttT6565AY.1020.001723
N110F110FttCttT6363B.1.1.2840.006766
N110F110FttCttT6060AY.750.003361
N110F110FttCttT5959B.1.5631
N110F110FttCttT5757AY.390.001409
N110F110FttCttT5555B.1.1.3471
N110F110FttCttT5454B.1.4270.002727
N110F110FttCttT5353AY.4.50.005697
N110F110FttCttT5252B.1.1.580.27957
N110F110FttCttT5151AY.470.001586
N110F110FttCttT5050B.1.2580.003327
N110F110FttCttT4949B.1.5960.00427
N110F110FttCttT4545B.1.1.330.018939
N110F110FttCttT4444AY.5.30.014845
N110F110FttCttT4141B.1.3820.366071
N110F110FttCttT3939B.1.1.5170.265306
N110F110FttCttT3939B.1.5950.010177
N110F110FttCttT3737B.1.2210.002628
N110F110FttCttT3636AY.98.10.001744
N110F110FttCttT3535B.1.243.10.777778
N110F110FttCttT3434AY.4.20.000737
N110F110FttCttT3333B.1.1.1570.030137
N110F110FttCttT3333B.1.1.2190.165
N110F110FttCttT3333C.370.00383
N110F110FttCttT3232B.1.621.10.016186
N110F110FttCttT3131AY.980.002449
N110F110FttCttT3030AY.1190.001059
N110F110FttCttT3030Q.20.018405
N110F110FttCttT2929AY.1210.003924
N110F110FttCttT2929B.1.1.2140.001608
N110F110FttCttT2828AY.290.000442
N110F110FttCttT2727AY.460.00281
N110F110FttCttT2727AY.9.20.000992
N110F110FttCttT2626B.1.5250.002942
N110F110FttCttT2525B.1.177.790.058548
N110F110FttCttT2525B.1.3110.006864
N110F110FttCttT2525B.1.617.10.003224
N110F110FttCttT2323P.1.10.007306
N110F110FttCttT2222B.1.6210.001947
N110F110FttCttT2121AY.610.0022
N110F110FttCttT2121P.1.100.005659
N110F110FttCttT2020AY.39.10.000792
N110F110FttCttT1919AY.1000.000874
N110F110FttCttT1919D.20.001426
N110F110FttCttT1717AY.1170.001437
N110F110FttCttT1717AY.420.000684
N110F110FttCttT1717B.1.1.4340.005925
N110F110FttCttT1717B.1.3490.012152
N110F110FttCttT1717Q.10.002148
N110F110FttCttT1616AY.10.006332
N110F110FttCttT1616AY.5.40.004427
N110F110FttCttT1616B.1.1.280.00498
N110F110FttCttT1616B.1.177.160.010631
N110F110FttCttT1616B.1.4160.020305
N110F110FttCttT1616C.36.3.10.043478
N110F110FttCttT1616P.1.160.005986
N110F110FttCttT1616Q.40.007276
N110F110FttCttT1515B.1.1.700.005116
N110F110FttCttT1515Q.80.002474
N110F110FttCttT1414AY.230.000976
N110F110FttCttT1414B.1.1.4640.020619
N110F110FttCttT1414B.1.2390.017094
N110F110FttCttT1313AY.99.20.001198
N110F110FttCttT1212AY.370.003793
N110F110FttCttT1212B.1.1.4320.01519
N110F110FttCttT1111AY.1180.000689
N110F110FttCttT1111AY.1200.000409
N110F110FttCttT1111AY.270.000712
N110F110FttCttT1111AY.300.004353
N110F110FttCttT1111AY.450.001339
N110F110FttCttT1111AY.46.60.000794
N110F110FttCttT1111AY.590.005826
N110F110FttCttT1111AY.710.005226
N110F110FttCttT1111B.1.1.1410.022133
N110F110FttCttT1111B.1.1.500.007468
N110F110FttCttT1010AJ.10.454545
N110F110FttCttT1010AY.99.10.015528
N110F110FttCttT1010B.1.1.370.001929
N110F110FttCttT1010B.1.177.810.001893
N110F110FttCttT99AY.1090.006657
N110F110FttCttT99AY.360.001334
N110F110FttCttT99B.1.2400.00194
N110F110FttCttT99P.1.150.002091
N110F110FttCttT99P.1.70.002874
N110F110FttCttT88AY.630.003095
N110F110FttCttT88AY.7.10.000902
N110F110FttCttT88AY.75.10.001442
N110F110FttCttT88B.1.1.2820.093023
N110F110FttCttT88B.1.1.2910.005939
N110F110FttCttT88B.1.214.20.004796
N110F110FttCttT88B.1.4970.002518
N110F110FttCttT77A.2.50.003493
N110F110FttCttT77AY.350.001631
N110F110FttCttT77AY.46.20.004447
N110F110FttCttT77AY.46.50.001389
N110F110FttCttT77AY.530.002013
N110F110FttCttT77B.1.1.10.002287
N110F110FttCttT77B.1.258.170.000728
N110F110FttCttT77B.1.36.290.003621
N110F110FttCttT77P.20.001306
N110F110FttCttT66AE.80.002934
N110F110FttCttT66AY.380.002996
N110F110FttCttT66AY.730.003992
N110F110FttCttT66B.1.1.1390.136364
N110F110FttCttT66B.1.1.1890.009077
N110F110FttCttT66B.1.1.250.003411
N110F110FttCttT66B.1.351.20.001815
N110F110FttCttT66B.1.3890.006012
N110F110FttCttT66B.1.466.20.002347
N110F110FttCttT66B.1.6060.036145
N110F110FttCttT66B.1.6090.002876
N110F110FttCttT66B.1.6290.08
N110F110FttCttT66C.36.30.003403
N110F110FttCttT55AU.10.006329
N110F110FttCttT55AY.1060.001674
N110F110FttCttT55AY.1130.000712
N110F110FttCttT55AY.240.002155
N110F110FttCttT55B.1.1.2310.01548
N110F110FttCttT55B.1.1.3260.008803
N110F110FttCttT55B.1.1.3970.011261
N110F110FttCttT55B.1.1.4370.052083
N110F110FttCttT55B.1.1.4480.010163
N110F110FttCttT55B.1.177.40.001055
N110F110FttCttT55B.1.177.70.000824
N110F110FttCttT55B.1.351.30.004382
N110F110FttCttT55B.1.3670.003962
N110F110FttCttT55B.1.438.10.000536
N110F110FttCttT55B.1.5610.001985
N110F110FttCttT55B.1.5750.001517
N110F110FttCttT440.222222
N110F110FttCttT44AT.10.020513
N110F110FttCttT44AY.120.10.001284
N110F110FttCttT44AY.3.10.000341
N110F110FttCttT44AY.4.2.10.000596
N110F110FttCttT44AY.480.00186
N110F110FttCttT44AZ.20.003284
N110F110FttCttT44B0.000511
N110F110FttCttT44B.1.1.1610.014134
N110F110FttCttT44B.1.1.2700.041237
N110F110FttCttT44B.1.1.3010.004717
N110F110FttCttT44B.1.1.3180.001207
N110F110FttCttT44B.1.1.4160.00362
N110F110FttCttT44B.1.177.180.00464
N110F110FttCttT44B.1.177.620.004768
N110F110FttCttT44B.1.177.750.004162
N110F110FttCttT44B.1.3690.001141
N110F110FttCttT44B.1.4000.001716
N110F110FttCttT44B.1.6190.003484
N110F110FttCttT44B.1.619.10.002566
N110F110FttCttT44B.1.930.003735
N110F110FttCttT44B.30.003322
N110F110FttCttT44R.10.00036
N110F110FttCttT33A0.001161
N110F110FttCttT33A.23.10.002113
N110F110FttCttT33AY.1050.001929
N110F110FttCttT33AY.1140.000693
N110F110FttCttT33AY.1160.00086
N110F110FttCttT33AY.140.000264
N110F110FttCttT33AY.16.10.00141
N110F110FttCttT33AY.29.10.000662
N110F110FttCttT33AY.690.00056
N110F110FttCttT33AY.70.000588
N110F110FttCttT33AY.860.00249
N110F110FttCttT33AY.880.002653
N110F110FttCttT33AY.9.10.000251
N110F110FttCttT33AY.930.000819
N110F110FttCttT33AY.960.006224
N110F110FttCttT33AY.970.005102
N110F110FttCttT33B.1.1.1450.111111
N110F110FttCttT33B.1.1.1720.054545
N110F110FttCttT33B.1.1.2430.012245
N110F110FttCttT33B.1.1.3110.001074
N110F110FttCttT33B.1.1.4170.008108
N110F110FttCttT33B.1.1.460.0131
N110F110FttCttT33B.1.177.120.000455
N110F110FttCttT33B.1.177.250.044776
N110F110FttCttT33B.1.177.730.001699
N110F110FttCttT33B.1.3360.007317
N110F110FttCttT33B.1.36.10.003421
N110F110FttCttT33B.1.4090.002344
N110F110FttCttT33B.1.429.10.036145
N110F110FttCttT33B.1.4530.009709
N110F110FttCttT33B.1.5170.001281
N110F110FttCttT33B.1.5760.00272
N110F110FttCttT33B.1.595.10.017544
N110F110FttCttT33B.1.5990.010949
N110F110FttCttT33B.1.6200.002838
N110F110FttCttT33B.1.6230.001609
N110F110FttCttT33B.1.6370.000219
N110F110FttCttT33C.140.012987
N110F110FttCttT33C.320.069767
N110F110FttCttT33P.1.120.001452
N110F110FttCttT33P.1.20.003468
N110F110FttCttT33Q.30.000435
N110F110FttCttT22A.2.5.10.009615
N110F110FttCttT22AD.20.000438
N110F110FttCttT22AY.1070.000932
N110F110FttCttT22AY.1110.000366
N110F110FttCttT22AY.116.10.000623
N110F110FttCttT22AY.4.10.001475
N110F110FttCttT22AY.4.40.000818
N110F110FttCttT22AY.620.000871
N110F110FttCttT22AY.680.000547
N110F110FttCttT22AY.780.003082
N110F110FttCttT22AY.80.001212
N110F110FttCttT22AY.800.002257
N110F110FttCttT22AY.910.001461
N110F110FttCttT22B.1.1.2080.02439
N110F110FttCttT22B.1.1.2690.002706
N110F110FttCttT22B.1.1.2770.001517
N110F110FttCttT22B.1.1.2940.002532
N110F110FttCttT22B.1.1.3040.005618
N110F110FttCttT22B.1.1.3480.001592
N110F110FttCttT22B.1.1.3680.006173
N110F110FttCttT22B.1.1.3740.004751
N110F110FttCttT22B.1.1.390.001019
N110F110FttCttT22B.1.1.4090.005666
N110F110FttCttT22B.1.1.440.004819
N110F110FttCttT22B.1.1.5280.009615
N110F110FttCttT22B.1.1110.00235
N110F110FttCttT22B.1.160.320.008584
N110F110FttCttT22B.1.177.110.003396
N110F110FttCttT22B.1.177.320.002699
N110F110FttCttT22B.1.177.440.001038
N110F110FttCttT22B.1.177.530.004785
N110F110FttCttT22B.1.177.600.000437
N110F110FttCttT22B.1.177.860.000367
N110F110FttCttT22B.1.1790.007519
N110F110FttCttT22B.1.1990.008264
N110F110FttCttT22B.1.258.20.009009
N110F110FttCttT22B.1.2790.001027
N110F110FttCttT22B.1.2980.004228
N110F110FttCttT22B.1.3050.004301
N110F110FttCttT22B.1.3200.002491
N110F110FttCttT22B.1.36.180.00084
N110F110FttCttT22B.1.36.80.002
N110F110FttCttT22B.1.4560.006536
N110F110FttCttT22B.1.4800.004975
N110F110FttCttT22B.1.4990.002101
N110F110FttCttT22B.1.564.10.003155
N110F110FttCttT22B.1.5770.001375
N110F110FttCttT22B.400.000729
N110F110FttCttT22N.40.008511
N110F110FttCttT22N.50.003534
N110F110FttCttT22P.1.80.009569
N110F110FttCttT11A.10.000282
N110F110FttCttT11A.20.000662
N110F110FttCttT11A.2.20.001689
N110F110FttCttT11A.50.001923
N110F110FttCttT11AU.20.002421
N110F110FttCttT11AY.100.00053
N110F110FttCttT11AY.110.001339
N110F110FttCttT11AY.1100.000113
N110F110FttCttT11AY.130.000161
N110F110FttCttT11AY.190.00114
N110F110FttCttT11AY.23.10.000417
N110F110FttCttT11AY.280.00189
N110F110FttCttT11AY.320.000532
N110F110FttCttT11AY.340.000097
N110F110FttCttT11AY.34.10.00051
N110F110FttCttT11AY.4.30.000842
N110F110FttCttT11AY.400.000964
N110F110FttCttT11AY.46.40.000165
N110F110FttCttT11AY.550.000917
N110F110FttCttT11AY.570.000656
N110F110FttCttT11AY.640.000595
N110F110FttCttT11AY.650.000533
N110F110FttCttT11AY.660.00107
N110F110FttCttT11AY.700.000209
N110F110FttCttT11AY.740.000116
N110F110FttCttT11AY.770.001127
N110F110FttCttT11AY.790.001211
N110F110FttCttT11AY.840.000437
N110F110FttCttT11AY.850.000427
N110F110FttCttT11AY.870.000833
N110F110FttCttT11AY.920.000287
N110F110FttCttT11AY.950.000761
N110F110FttCttT11B.1.1.120.007463
N110F110FttCttT11B.1.1.1320.014925
N110F110FttCttT11B.1.1.150.013514
N110F110FttCttT11B.1.1.1700.001247
N110F110FttCttT11B.1.1.1760.000439
N110F110FttCttT11B.1.1.1960.005714
N110F110FttCttT11B.1.1.1980.001468
N110F110FttCttT11B.1.1.2050.003717
N110F110FttCttT11B.1.1.2270.004348
N110F110FttCttT11B.1.1.2610.008621
N110F110FttCttT11B.1.1.2790.001121
N110F110FttCttT11B.1.1.2890.002083
N110F110FttCttT11B.1.1.3020.002075
N110F110FttCttT11B.1.1.3060.000438
N110F110FttCttT11B.1.1.3150.008475
N110F110FttCttT11B.1.1.3160.000925
N110F110FttCttT11B.1.1.3220.008772
N110F110FttCttT11B.1.1.3280.016949
N110F110FttCttT11B.1.1.3320.03125
N110F110FttCttT11B.1.1.3330.001076
N110F110FttCttT11B.1.1.3390.010526
N110F110FttCttT11B.1.1.3440.010753
N110F110FttCttT11B.1.1.3540.004386
N110F110FttCttT11B.1.1.3750.011905
N110F110FttCttT11B.1.1.3770.001381
N110F110FttCttT11B.1.1.3890.006061
N110F110FttCttT11B.1.1.3920.052632
N110F110FttCttT11B.1.1.40.002976
N110F110FttCttT11B.1.1.4030.025641
N110F110FttCttT11B.1.1.4060.006494
N110F110FttCttT11B.1.1.50.008333
N110F110FttCttT11B.1.1.5180.006329
N110F110FttCttT11B.1.1.5260.003546
N110F110FttCttT11B.1.1.630.000386
N110F110FttCttT11B.1.1.740.00431
N110F110FttCttT11B.1.1.890.006061
N110F110FttCttT11B.1.110.30.000718
N110F110FttCttT11B.1.1280.000635
N110F110FttCttT11B.1.1430.021277
N110F110FttCttT11B.1.160.140.002119
N110F110FttCttT11B.1.160.330.004425
N110F110FttCttT11B.1.1700.00431
N110F110FttCttT11B.1.177.150.000631
N110F110FttCttT11B.1.177.190.001431
N110F110FttCttT11B.1.177.20.004545
N110F110FttCttT11B.1.177.350.000691
N110F110FttCttT11B.1.177.480.003125
N110F110FttCttT11B.1.177.520.001757
N110F110FttCttT11B.1.177.540.000606
N110F110FttCttT11B.1.177.570.000281
N110F110FttCttT11B.1.177.60.000977
N110F110FttCttT11B.1.177.720.00339
N110F110FttCttT11B.1.177.770.000726
N110F110FttCttT11B.1.1890.004292
N110F110FttCttT11B.1.1920.009259
N110F110FttCttT11B.1.1950.005025
N110F110FttCttT11B.1.2010.005682
N110F110FttCttT11B.1.2060.000816
N110F110FttCttT11B.1.220.001318
N110F110FttCttT11B.1.230.006061
N110F110FttCttT11B.1.2410.000812
N110F110FttCttT11B.1.258.30.001675
N110F110FttCttT11B.1.3290.000608
N110F110FttCttT11B.1.3330.010526
N110F110FttCttT11B.1.3350.010309
N110F110FttCttT11B.1.3460.001311
N110F110FttCttT11B.1.350.008475
N110F110FttCttT11B.1.351.10.038462
N110F110FttCttT11B.1.36.100.004785
N110F110FttCttT11B.1.36.170.000494
N110F110FttCttT11B.1.36.190.009259
N110F110FttCttT11B.1.36.210.00216
N110F110FttCttT11B.1.36.360.000602
N110F110FttCttT11B.1.36.380.001642
N110F110FttCttT11B.1.3610.001289
N110F110FttCttT11B.1.362.20.004717
N110F110FttCttT11B.1.3750.00082
N110F110FttCttT11B.1.400.10.015152
N110F110FttCttT11B.1.416.10.001563
N110F110FttCttT11B.1.4220.000812
N110F110FttCttT11B.1.4480.002625
N110F110FttCttT11B.1.4520.013699
N110F110FttCttT11B.1.4690.00361
N110F110FttCttT11B.1.4700.001404
N110F110FttCttT11B.1.4710.002732
N110F110FttCttT11B.1.4730.019231
N110F110FttCttT11B.1.4740.001901
N110F110FttCttT11B.1.4780.011765
N110F110FttCttT11B.1.5040.03125
N110F110FttCttT11B.1.5130.013889
N110F110FttCttT11B.1.5240.001406
N110F110FttCttT11B.1.5460.003704
N110F110FttCttT11B.1.5600.00463
N110F110FttCttT11B.1.5640.000426
N110F110FttCttT11B.1.5650.00081
N110F110FttCttT11B.1.5680.001111
N110F110FttCttT11B.1.5820.000491
N110F110FttCttT11B.1.5870.001898
N110F110FttCttT11B.1.595.40.007299
N110F110FttCttT11B.1.6270.00202
N110F110FttCttT11B.1.9.20.1
N110F110FttCttT11B.1.9.40.006135
N110F110FttCttT11B.100.008264
N110F110FttCttT11B.150.017544
N110F110FttCttT11B.4.50.011905
N110F110FttCttT11B.60.00091
N110F110FttCttT11C.110.010638
N110F110FttCttT11C.170.055556
N110F110FttCttT11C.20.016129
N110F110FttCttT11C.300.001727
N110F110FttCttT11C.350.000774
N110F110FttCttT11C.400.027778
N110F110FttCttT11L.30.003546
N110F110FttCttT11P.1.90.004808
N110F110FttCttT11U.20.008772

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.