CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : Mut = D3L

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N3D3LnonsynGATCTA113244311299000.99775428280-28282
N3D3LnonsynGAtCTt113244319590.0017298928280-28282
N3D3LnonsynGATTTA11324435740.00050686928280-28282
N3D3LnonsynGATCTG113244370.0000061813328280-28282
N3D3LnonsynGATCTC113244330.0000026491428280-28282

Details of the mutation D3L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N3D3LGATCTA11299001132443All0.216107
N3D3LGAtCTt19591132443All0.000375
N3D3LGATTTA5741132443All0.00011
N3D3LGATCTG71132443All0.000001
N3D3LGATCTC31132443All0.000001
N3D3LGATCTA10994601100535B.1.1.70.984262
N3D3LGATTTA5521100535B.1.1.70.000494
N3D3LGAtCTt5131100535B.1.1.70.000459
N3D3LGATCTG71100535B.1.1.70.000006
N3D3LGATCTC31100535B.1.1.70.000003
N3D3LGATCTA77637784Q.10.980672
N3D3LGATTTA137784Q.10.001642
N3D3LGAtCTt87784Q.10.001011
N3D3LGATCTA67076708Q.30.972734
N3D3LGAtCTt16708Q.30.000145
N3D3LGATCTA60246027Q.80.993404
N3D3LGATTTA36027Q.80.000495
N3D3LGATCTA27733380B.1.10.050305
N3D3LGAtCTt6073380B.1.10.011012
N3D3LGATCTA19651966Q.40.893588
N3D3LGAtCTt11966Q.40.000455
N3D3LGATCTA16231624Q.20.995706
N3D3LGAtCTt11624Q.20.000613
N3D3LGATCTA10231489B.10.00937
N3D3LGAtCTt4661489B.10.004268
N3D3LGATCTA891891Q.70.99
N3D3LGATCTA144202B.1.177.730.08154
N3D3LGAtCTt58202B.1.177.730.032843
N3D3LGATCTA140140Q.60.927152
N3D3LGATCTA138138B.1.214.20.082734
N3D3LGATCTA3671B.1.1.4090.101983
N3D3LGAtCTt3571B.1.1.4090.09915
N3D3LGATCTA5864B0.007413
N3D3LGAtCTt664B0.000767
N3D3LGATCTA4862B.1.3750.039344
N3D3LGAtCTt1462B.1.3750.011475
N3D3LGATCTA4660B.1.1770.000606
N3D3LGAtCTt1460B.1.1770.000184
N3D3LGATCTA3959B.1.2210.00277
N3D3LGAtCTt2059B.1.2210.001421
N3D3LGATCTA5959Q.51
N3D3LGATCTA3752B.1.20.000326
N3D3LGAtCTt1552B.1.20.000132
N3D3LGATCTA4447B.1.258.170.004575
N3D3LGAtCTt347B.1.258.170.000312
N3D3LGATCTA3847B.1.5760.034451
N3D3LGAtCTt947B.1.5760.00816
N3D3LGATCTA4447P.10.000693
N3D3LGAtCTt347P.10.000047
N3D3LGATCTA4545XA1
N3D3LGATCTA3643B.1.5260.000846
N3D3LGAtCTt743B.1.5260.000165
N3D3LGATCTA3839P.1.10.012071
N3D3LGAtCTt139P.1.10.000318
N3D3LGATCTA3538AY.440.000213
N3D3LGAtCTt338AY.440.000018
N3D3LGATCTA2738B.1.177.70.004451
N3D3LGAtCTt1138B.1.177.70.001813
N3D3LGATCTA2538B.1.5960.002178
N3D3LGAtCTt1338B.1.5960.001133
N3D3LGATCTA1427B.1.1.5070.121739
N3D3LGAtCTt1327B.1.1.5070.113043
N3D3LGATCTA2126B.1.617.20.000079
N3D3LGAtCTt526B.1.617.20.000019
N3D3LGATCTA2222B.1.214.30.157143
N3D3LGATCTA1121B.1.1.1610.038869
N3D3LGAtCTt1021B.1.1.1610.035336
N3D3LGATCTA1821B.1.1.5190.000715
N3D3LGAtCTt321B.1.1.5190.000119
N3D3LGATCTA1921B.1.3510.000565
N3D3LGAtCTt221B.1.3510.000059
N3D3LGATCTA1620B.1.1600.000499
N3D3LGAtCTt420B.1.1600.000125
N3D3LGATCTA1219AY.430.000053
N3D3LGAtCTt719AY.430.000031
N3D3LGATCTA11160.611111
N3D3LGAtCTt4160.222222
N3D3LGATTTA1160.055556
N3D3LGATCTA1616AY.260.000453
N3D3LGATCTA1315B.1.1.2200.024164
N3D3LGAtCTt215B.1.1.2200.003717
N3D3LGATCTA1112AY.290.000174
N3D3LGAtCTt112AY.290.000016
N3D3LGATCTA1212P.1.160.004489
N3D3LGATCTA1111B.1.1.3120.021033
N3D3LGATCTA911B.1.4290.000212
N3D3LGAtCTt211B.1.4290.000047
N3D3LGATCTA1111B.1.5250.001245
N3D3LGATCTA711B.1.6230.003755
N3D3LGAtCTt311B.1.6230.001609
N3D3LGATTTA111B.1.6230.000536
N3D3LGATCTA1010B.1.1.390.005097
N3D3LGATCTA710B.1.1390.005132
N3D3LGAtCTt310B.1.1390.002199
N3D3LGATCTA810B.1.4270.000404
N3D3LGAtCTt210B.1.4270.000101
N3D3LGATCTA1010B.1.6090.004794
N3D3LGATCTA69AY.40.000009
N3D3LGAtCTt39AY.40.000005
N3D3LGATCTA79B.1.3110.001922
N3D3LGAtCTt29B.1.3110.000549
N3D3LGATCTA89B.1.6210.000708
N3D3LGAtCTt19B.1.6210.000089
N3D3LGATCTA58A.2.50.002495
N3D3LGAtCTt38A.2.50.001497
N3D3LGATCTA48AY.420.000161
N3D3LGAtCTt48AY.420.000161
N3D3LGATCTA78B.1.1.700.002387
N3D3LGAtCTt18B.1.1.700.000341
N3D3LGATCTA88B.1.2580.000532
N3D3LGATCTA47A0.001548
N3D3LGAtCTt37A0.001161
N3D3LGATCTA67AY.250.000036
N3D3LGAtCTt17AY.250.000006
N3D3LGATCTA67B.1.1.280.001867
N3D3LGAtCTt17B.1.1.280.000311
N3D3LGATCTA47B.1.617.10.000516
N3D3LGATTTA27B.1.617.10.000258
N3D3LGAtCTt17B.1.617.10.000129
N3D3LGATCTA47B.1.6370.000292
N3D3LGAtCTt37B.1.6370.000219
N3D3LGATCTA66AY.300.002374
N3D3LGAtCTt36AY.920.000862
N3D3LGATCTA36AY.920.000862
N3D3LGATCTA56B.1.1.100.005574
N3D3LGAtCTt16B.1.1.100.001115
N3D3LGATCTA36B.1.1.3700.037975
N3D3LGAtCTt36B.1.1.3700.037975
N3D3LGATCTA66B.1.1.5280.028846
N3D3LGATCTA66B.1.3360.014634
N3D3LGAtCTt36B.1.3690.000856
N3D3LGATCTA36B.1.3690.000856
N3D3LGATCTA66B.1.4110.022222
N3D3LGATCTA46B.1.5950.001044
N3D3LGAtCTt26B.1.5950.000522
N3D3LGATCTA66B.1.6250.014118
N3D3LGATCTA46P.1.120.001936
N3D3LGAtCTt26P.1.120.000968
N3D3LGATCTA66R.10.00054
N3D3LGATCTA55AY.1020.000133
N3D3LGATCTA35AY.520.002443
N3D3LGAtCTt25AY.520.001629
N3D3LGATCTA55B.1.1.2940.006329
N3D3LGATCTA35B.1.5800.012195
N3D3LGAtCTt25B.1.5800.00813
N3D3LGATCTA45B.1.6280.001409
N3D3LGAtCTt15B.1.6280.000352
N3D3LGATCTA35C.36.30.001702
N3D3LGATTTA25C.36.30.001134
N3D3LGATCTA55P.1.170.000809
N3D3LGATCTA34AY.75.10.000541
N3D3LGAtCTt14AY.75.10.00018
N3D3LGATCTA34B.1.1490.010274
N3D3LGAtCTt14B.1.1490.003425
N3D3LGATCTA44B.1.1570.01194
N3D3LGATCTA24B.1.177.860.000367
N3D3LGAtCTt24B.1.177.860.000367
N3D3LGATCTA44B.1.2140.014652
N3D3LGATCTA34B.1.2340.000396
N3D3LGAtCTt14B.1.2340.000132
N3D3LGATCTA34B.1.2430.000209
N3D3LGAtCTt14B.1.2430.00007
N3D3LGATCTA44B.1.258.140.003922
N3D3LGAtCTt24B.1.3970.009709
N3D3LGATCTA24B.1.3970.009709
N3D3LGATCTA24B.1.5990.007299
N3D3LGAtCTt24B.1.5990.007299
N3D3LGAtCTt24B.1.940.054054
N3D3LGATCTA24B.1.940.054054
N3D3LGAtCTt24P.1.130.001797
N3D3LGATCTA24P.1.130.001797
N3D3LGATCTA34P.1.150.000697
N3D3LGAtCTt14P.1.150.000232
N3D3LGATCTA33AY.1130.000427
N3D3LGATCTA33AY.200.000117
N3D3LGATCTA33AY.30.00003
N3D3LGATCTA23AY.39.10.000079
N3D3LGAtCTt13AY.39.10.00004
N3D3LGATCTA33B.1.1.3180.000905
N3D3LGATCTA33B.1.1.5240.0625
N3D3LGATCTA33B.1.1.5250.016393
N3D3LGATCTA23B.1.1.990.047619
N3D3LGAtCTt13B.1.1.990.02381
N3D3LGATCTA33B.1.1700.012931
N3D3LGATCTA33B.1.214.40.027273
N3D3LGATCTA23B.1.5240.002813
N3D3LGAtCTt13B.1.5240.001406
N3D3LGATCTA23B.1.5650.001621
N3D3LGAtCTt13B.1.5650.00081
N3D3LGATCTA23B.1.5770.001375
N3D3LGAtCTt13B.1.5770.000687
N3D3LGATCTA23B.1.6190.001742
N3D3LGAtCTt13B.1.6190.000871
N3D3LGATCTA23B.1.6200.001892
N3D3LGAtCTt13B.1.6200.000946
N3D3LGATCTA33C.370.000348
N3D3LGATCTA22AY.1030.000012
N3D3LGAtCTt12AY.130.000161
N3D3LGATCTA12AY.130.000161
N3D3LGATCTA12AY.230.00007
N3D3LGAtCTt12AY.230.00007
N3D3LGAtCTt12AY.340.000097
N3D3LGATCTA12AY.340.000097
N3D3LGATCTA22AY.390.000049
N3D3LGATCTA12AY.400.000964
N3D3LGAtCTt12AY.400.000964
N3D3LGATCTA22AY.460.000208
N3D3LGATCTA12AY.750.000056
N3D3LGAtCTt12AY.750.000056
N3D3LGATCTA12AY.9.20.000037
N3D3LGAtCTt12AY.9.20.000037
N3D3LGATCTA12AY.950.000761
N3D3LGAtCTt12AY.950.000761
N3D3LGATCTA12B.1.1.1710.003676
N3D3LGAtCTt12B.1.1.1710.003676
N3D3LGATCTA22B.1.1.1890.003026
N3D3LGAtCTt12B.1.1.2160.00089
N3D3LGATCTA12B.1.1.2160.00089
N3D3LGATCTA12B.1.1.2360.006897
N3D3LGAtCTt12B.1.1.2360.006897
N3D3LGATCTA22B.1.1.3150.016949
N3D3LGAtCTt12B.1.1.3740.002375
N3D3LGATCTA12B.1.1.3740.002375
N3D3LGAtCTt12B.1.1.3890.006061
N3D3LGATCTA12B.1.1.3890.006061
N3D3LGATCTA22B.1.1.4130.013793
N3D3LGAtCTt12B.1.1.4640.001473
N3D3LGATCTA12B.1.1.4640.001473
N3D3LGAtCTt12B.1.177.520.001757
N3D3LGATCTA12B.1.177.520.001757
N3D3LGAtCTt12B.1.177.670.007634
N3D3LGATCTA12B.1.177.670.007634
N3D3LGAtCTt12B.1.2060.000816
N3D3LGATCTA12B.1.2060.000816
N3D3LGATCTA22B.1.2370.00995
N3D3LGAtCTt12B.1.3010.005917
N3D3LGATCTA12B.1.3010.005917
N3D3LGATCTA22B.1.3670.001585
N3D3LGATCTA12B.1.3990.001934
N3D3LGAtCTt12B.1.3990.001934
N3D3LGATCTA12B.1.4320.011236
N3D3LGAtCTt12B.1.4320.011236
N3D3LGATCTA12B.1.4330.003195
N3D3LGAtCTt12B.1.4330.003195
N3D3LGATCTA22B.1.5170.000854
N3D3LGATCTA12B.1.5640.000426
N3D3LGAtCTt12B.1.5640.000426
N3D3LGAtCTt12B.1.6270.00202
N3D3LGATCTA12B.1.6270.00202
N3D3LGAtCTt12B.1.6340.003425
N3D3LGATCTA12B.1.6340.003425
N3D3LGATCTA12B.1.6360.006711
N3D3LGAtCTt12B.1.6360.006711
N3D3LGATCTA22P.1.70.000639
N3D3LGATCTA11AY.1000.000046
N3D3LGATCTA11AY.1180.000063
N3D3LGATCTA11AY.20.000356
N3D3LGATCTA11AY.540.000095
N3D3LGATCTA11AY.680.000274
N3D3LGATCTA11AY.70.000196
N3D3LGATCTA11AY.770.001127
N3D3LGATCTA11AY.840.000437
N3D3LGATCTA11AY.9.10.000084
N3D3LGATCTA11AY.960.002075
N3D3LGATCTA11AZ.20.000821
N3D3LGATCTA11B.1.1.1410.002012
N3D3LGATCTA11B.1.1.2540.011236
N3D3LGATCTA11B.1.1.2650.003155
N3D3LGATCTA11B.1.1.2800.003086
N3D3LGATCTA11B.1.1.2910.000742
N3D3LGATCTA11B.1.1.3010.001179
N3D3LGATCTA11B.1.1.3060.000438
N3D3LGATCTA11B.1.1.330.000421
N3D3LGATCTA11B.1.1.340.013158
N3D3LGATCTA11B.1.1.3400.045455
N3D3LGATCTA11B.1.1.3670.055556
N3D3LGATCTA11B.1.1.3720.000689
N3D3LGATCTA11B.1.1.500.000679
N3D3LGATCTA11B.1.1.510.001718
N3D3LGATCTA11B.1.1.5230.001563
N3D3LGATCTA11B.1.1.5260.003546
N3D3LGATCTA11B.1.1.890.006061
N3D3LGATCTA11B.1.1400.018868
N3D3LGATCTA11B.1.160.140.002119
N3D3LGATCTA11B.1.160.160.000929
N3D3LGATCTA11B.1.160.80.001289
N3D3LGATCTA11B.1.177.310.011494
N3D3LGATCTA11B.1.177.350.000691
N3D3LGATCTA11B.1.177.810.000189
N3D3LGATCTA11B.1.177.840.006667
N3D3LGATCTA11B.1.1790.003759
N3D3LGATCTA11B.1.214.10.02
N3D3LGATCTA11B.1.3710.001122
N3D3LGATCTA11B.1.415.10.007576
N3D3LGATCTA11B.1.4590.004082
N3D3LGATCTA11B.1.4620.007246
N3D3LGATCTA11B.1.466.20.000391
N3D3LGATCTA11B.1.5330.009615
N3D3LGATCTA11B.1.5750.000303
N3D3LGATCTA11B.1.5900.004545
N3D3LGAtCTt11B.1.6060.006024
N3D3LGATCTA11B.1.780.008547
N3D3LGATCTA11B.60.00091