CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : Mut = D348V

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N348D348VnonsyngAtgTt28260.92857129315-29317
N348D348VnonsyngATgTA2810.035714329315-29317
N348D348VnonsyngATgTC2810.035714329315-29317

Details of the mutation D348V within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N348D348VgAtgTt2628All0.000005
N348D348VgATgTC128All0
N348D348VgATgTA128All0
N348D348VgAtgTt1111B.1.1.70.00001
N348D348VgAtgTt130.055556
N348D348VgATgTC130.055556
N348D348VgATgTA130.055556
N348D348VgAtgTt22AY.40.000003
N348D348VgAtgTt11AY.160.00038
N348D348VgAtgTt11AY.250.000006
N348D348VgAtgTt11AY.370.000316
N348D348VgAtgTt11AY.440.000006
N348D348VgAtgTt11AY.46.40.000165
N348D348VgAtgTt11AY.90.000068
N348D348VgAtgTt11B.1.1200.007692
N348D348VgAtgTt11B.1.160.160.000929
N348D348VgAtgTt11B.1.5260.000024
N348D348VgAtgTt11B.1.6370.000073
N348D348VgAtgTt11C.360.000911
N348D348VgAtgTt11P.10.000016

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.