CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
N | 128 | D128D | syn | gaC | gaT | 27219 | 27219 | 1 | 28655-28657 |
Details of the mutation D128D within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
N | 128 | D128D | gaC | gaT | 27219 | 27219 | All | 0.005206 |
N | 128 | D128D | gaC | gaT | 2956 | 2956 | B.1.1.7 | 0.002646 |
N | 128 | D128D | gaC | gaT | 2601 | 2601 | AY.92 | 0.747199 |
N | 128 | D128D | gaC | gaT | 1945 | 1945 | A.2.5 | 0.970559 |
N | 128 | D128D | gaC | gaT | 1911 | 1911 | B.1.621.1 | 0.966616 |
N | 128 | D128D | gaC | gaT | 1895 | 1895 | B.1.177 | 0.024953 |
N | 128 | D128D | gaC | gaT | 1893 | 1893 | AY.4 | 0.002946 |
N | 128 | D128D | gaC | gaT | 1471 | 1471 | A.2 | 0.973527 |
N | 128 | D128D | gaC | gaT | 788 | 788 | AY.44 | 0.004796 |
N | 128 | D128D | gaC | gaT | 647 | 647 | AY.84 | 0.283027 |
N | 128 | D128D | gaC | gaT | 618 | 618 | A.2.5.2 | 0.971698 |
N | 128 | D128D | gaC | gaT | 591 | 591 | A.2.2 | 0.998311 |
N | 128 | D128D | gaC | gaT | 586 | 586 | B.1.177.11 | 0.994907 |
N | 128 | D128D | gaC | gaT | 495 | 495 | AY.43 | 0.002193 |
N | 128 | D128D | gaC | gaT | 422 | 422 | AY.26 | 0.011947 |
N | 128 | D128D | gaC | gaT | 372 | 372 | B.1.2 | 0.003276 |
N | 128 | D128D | gaC | gaT | 368 | 368 | B.1.1 | 0.006676 |
N | 128 | D128D | gaC | gaT | 326 | 326 | B.1.427 | 0.016462 |
N | 128 | D128D | gaC | gaT | 304 | 304 | AY.103 | 0.001888 |
N | 128 | D128D | gaC | gaT | 298 | 298 | B.1.234 | 0.039319 |
N | 128 | D128D | gaC | gaT | 298 | 298 | B.1.617.2 | 0.001122 |
N | 128 | D128D | gaC | gaT | 297 | 297 | A.2.4 | 1 |
N | 128 | D128D | gaC | gaT | 294 | 294 | AY.25 | 0.001768 |
N | 128 | D128D | gaC | gaT | 288 | 288 | B.1 | 0.002638 |
N | 128 | D128D | gaC | gaT | 211 | 211 | A.2.3 | 1 |
N | 128 | D128D | gaC | gaT | 208 | 208 | A.2.5.1 | 1 |
N | 128 | D128D | gaC | gaT | 208 | 208 | P.1 | 0.003277 |
N | 128 | D128D | gaC | gaT | 191 | 191 | AY.13 | 0.030747 |
N | 128 | D128D | gaC | gaT | 159 | 159 | AY.34 | 0.015417 |
N | 128 | D128D | gaC | gaT | 158 | 158 | B.1.596 | 0.013768 |
N | 128 | D128D | gaC | gaT | 144 | 144 | AY.4.2.1 | 0.021454 |
N | 128 | D128D | gaC | gaT | 139 | 139 | B.1.1.420 | 0.139839 |
N | 128 | D128D | gaC | gaT | 131 | 131 | AY.105 | 0.084244 |
N | 128 | D128D | gaC | gaT | 131 | 131 | AY.118 | 0.008207 |
N | 128 | D128D | gaC | gaT | 121 | 121 | B.1.621 | 0.010711 |
N | 128 | D128D | gaC | gaT | 116 | 116 | AY.42 | 0.004667 |
N | 128 | D128D | gaC | gaT | 107 | 107 | B.1.429 | 0.002518 |
N | 128 | D128D | gaC | gaT | 103 | 103 | P.2 | 0.019224 |
N | 128 | D128D | gaC | gaT | 101 | 101 | B.1.526 | 0.002374 |
N | 128 | D128D | gaC | gaT | 94 | 94 | A.2.5.3 | 0.969072 |
N | 128 | D128D | gaC | gaT | 85 | 85 | AY.39 | 0.0021 |
N | 128 | D128D | gaC | gaT | 79 | 79 | AY.7.2 | 0.044183 |
N | 128 | D128D | gaC | gaT | 79 | 79 | AY.98.1 | 0.003826 |
N | 128 | D128D | gaC | gaT | 75 | 75 | B.1.409 | 0.058594 |
N | 128 | D128D | gaC | gaT | 73 | 73 | AY.4.2 | 0.001583 |
N | 128 | D128D | gaC | gaT | 67 | 67 | AY.33 | 0.004474 |
N | 128 | D128D | gaC | gaT | 67 | 67 | B.1.177.56 | 0.044726 |
N | 128 | D128D | gaC | gaT | 64 | 64 | Q.1 | 0.008085 |
N | 128 | D128D | gaC | gaT | 61 | 61 | AY.54 | 0.005816 |
N | 128 | D128D | gaC | gaT | 59 | 59 | B.1.126 | 0.075255 |
N | 128 | D128D | gaC | gaT | 59 | 59 | B.1.351 | 0.001754 |
N | 128 | D128D | gaC | gaT | 57 | 57 | B.1.177.21 | 0.004359 |
N | 128 | D128D | gaC | gaT | 52 | 52 | AY.47 | 0.001617 |
N | 128 | D128D | gaC | gaT | 48 | 48 | AY.20 | 0.001866 |
N | 128 | D128D | gaC | gaT | 47 | 47 | B.1.177.60 | 0.010266 |
N | 128 | D128D | gaC | gaT | 46 | 46 | AY.61 | 0.00482 |
N | 128 | D128D | gaC | gaT | 45 | 45 | B.1.160 | 0.001403 |
N | 128 | D128D | gaC | gaT | 45 | 45 | P.1.14 | 0.002151 |
N | 128 | D128D | gaC | gaT | 43 | 43 | AY.29 | 0.000678 |
N | 128 | D128D | gaC | gaT | 43 | 43 | AY.4.5 | 0.004622 |
N | 128 | D128D | gaC | gaT | 42 | 42 | AY.120 | 0.001562 |
N | 128 | D128D | gaC | gaT | 42 | 42 | B.1.1.519 | 0.001668 |
N | 128 | D128D | gaC | gaT | 41 | 41 | C.36 | 0.037341 |
N | 128 | D128D | gaC | gaT | 39 | 39 | B.1.1.214 | 0.002163 |
N | 128 | D128D | gaC | gaT | 39 | 39 | B.1.1.318 | 0.011768 |
N | 128 | D128D | gaC | gaT | 38 | 38 | B.1.1.63 | 0.01466 |
N | 128 | D128D | gaC | gaT | 37 | 37 | B.1.1.317 | 0.015233 |
N | 128 | D128D | gaC | gaT | 35 | 35 | AY.34.1 | 0.017848 |
N | 128 | D128D | gaC | gaT | 34 | 34 | AY.39.1 | 0.001347 |
N | 128 | D128D | gaC | gaT | 34 | 34 | B.1.637 | 0.002484 |
N | 128 | D128D | gaC | gaT | 33 | 33 | B.1.1.225 | 0.23741 |
N | 128 | D128D | gaC | gaT | 32 | 32 | AY.119 | 0.00113 |
N | 128 | D128D | gaC | gaT | 32 | 32 | B.1.258 | 0.00213 |
N | 128 | D128D | gaC | gaT | 32 | 32 | B.1.577 | 0.021993 |
N | 128 | D128D | gaC | gaT | 31 | 31 | AY.9.2 | 0.001139 |
N | 128 | D128D | gaC | gaT | 29 | 29 | AY.3 | 0.000288 |
N | 128 | D128D | gaC | gaT | 28 | 28 | AY.46.1 | 0.028747 |
N | 128 | D128D | gaC | gaT | 27 | 27 | AY.46.6 | 0.00195 |
N | 128 | D128D | gaC | gaT | 26 | 26 | B.1.1.222 | 0.005304 |
N | 128 | D128D | gaC | gaT | 26 | 26 | B.1.243 | 0.001809 |
N | 128 | D128D | gaC | gaT | 25 | 25 | AY.71 | 0.011876 |
N | 128 | D128D | gaC | gaT | 25 | 25 | B.1.221 | 0.001776 |
N | 128 | D128D | gaC | gaT | 24 | 24 | AY.63 | 0.009284 |
N | 128 | D128D | gaC | gaT | 24 | 24 | B.1.1.525 | 0.131148 |
N | 128 | D128D | gaC | gaT | 23 | 23 | B.1.396 | 0.016231 |
N | 128 | D128D | gaC | gaT | 22 | 22 | AY.3.1 | 0.001876 |
N | 128 | D128D | gaC | gaT | 22 | 22 | AY.99.2 | 0.002027 |
N | 128 | D128D | gaC | gaT | 21 | 21 | AY.5 | 0.000434 |
N | 128 | D128D | gaC | gaT | 20 | 20 | B.1.1.418 | 0.454545 |
N | 128 | D128D | gaC | gaT | 18 | 18 | B.1.564 | 0.007666 |
N | 128 | D128D | gaC | gaT | 17 | 17 | AY.7.1 | 0.001916 |
N | 128 | D128D | gaC | gaT | 17 | 17 | AY.75.1 | 0.003065 |
N | 128 | D128D | gaC | gaT | 17 | 17 | B.1.36 | 0.00248 |
N | 128 | D128D | gaC | gaT | 17 | 17 | B.1.466.2 | 0.006651 |
N | 128 | D128D | gaC | gaT | 16 | 16 | AY.23 | 0.001116 |
N | 128 | D128D | gaC | gaT | 15 | 15 | A.23.1 | 0.010563 |
N | 128 | D128D | gaC | gaT | 15 | 15 | AY.45 | 0.001825 |
N | 128 | D128D | gaC | gaT | 15 | 15 | AY.5.4 | 0.004151 |
N | 128 | D128D | gaC | gaT | 15 | 15 | AY.75 | 0.00084 |
N | 128 | D128D | gaC | gaT | 15 | 15 | B.1.1.1 | 0.0049 |
N | 128 | D128D | gaC | gaT | 15 | 15 | B.1.1.434 | 0.005228 |
N | 128 | D128D | gaC | gaT | 14 | 14 | AY.53 | 0.004025 |
N | 128 | D128D | gaC | gaT | 14 | 14 | B.1.1.277 | 0.010622 |
N | 128 | D128D | gaC | gaT | 14 | 14 | B.1.369 | 0.003993 |
N | 128 | D128D | gaC | gaT | 14 | 14 | B.1.595 | 0.003653 |
N | 128 | D128D | gaC | gaT | 13 | 13 | B.1.111 | 0.015276 |
N | 128 | D128D | gaC | gaT | 13 | 13 | B.1.177.86 | 0.002385 |
N | 128 | D128D | gaC | gaT | 13 | 13 | B.1.36.1 | 0.014823 |
N | 128 | D128D | gaC | gaT | 13 | 13 | B.1.628 | 0.004581 |
N | 128 | D128D | gaC | gaT | 13 | 13 | D.2 | 0.000976 |
N | 128 | D128D | gaC | gaT | 12 | 12 | AY.46 | 0.001249 |
N | 128 | D128D | gaC | gaT | 12 | 12 | AY.74 | 0.001388 |
N | 128 | D128D | gaC | gaT | 12 | 12 | B.1.525 | 0.001358 |
N | 128 | D128D | gaC | gaT | 12 | 12 | B.1.617.1 | 0.001548 |
N | 128 | D128D | gaC | gaT | 11 | 11 | AY.113 | 0.001566 |
N | 128 | D128D | gaC | gaT | 11 | 11 | AY.30 | 0.004353 |
N | 128 | D128D | gaC | gaT | 11 | 11 | AY.9.1 | 0.000921 |
N | 128 | D128D | gaC | gaT | 11 | 11 | B.1.1.170 | 0.013716 |
N | 128 | D128D | gaC | gaT | 11 | 11 | B.1.1.33 | 0.00463 |
N | 128 | D128D | gaC | gaT | 11 | 11 | B.1.1.398 | 0.035484 |
N | 128 | D128D | gaC | gaT | 11 | 11 | B.1.258.17 | 0.001144 |
N | 128 | D128D | gaC | gaT | 11 | 11 | C.37 | 0.001277 |
N | 128 | D128D | gaC | gaT | 11 | 11 | R.1 | 0.00099 |
N | 128 | D128D | gaC | gaT | 10 | 10 | AY.117 | 0.000845 |
N | 128 | D128D | gaC | gaT | 10 | 10 | B.1.177.62 | 0.011919 |
N | 128 | D128D | gaC | gaT | 10 | 10 | B.1.497 | 0.003148 |
N | 128 | D128D | gaC | gaT | 10 | 10 | B.52 | 0.10101 |
N | 128 | D128D | gaC | gaT | 10 | 10 | P.1.1 | 0.003177 |
N | 128 | D128D | gaC | gaT | 9 | 9 | AY.36 | 0.001334 |
N | 128 | D128D | gaC | gaT | 9 | 9 | AY.70 | 0.001877 |
N | 128 | D128D | gaC | gaT | 9 | 9 | B | 0.00115 |
N | 128 | D128D | gaC | gaT | 9 | 9 | B.1.1.322 | 0.078947 |
N | 128 | D128D | gaC | gaT | 9 | 9 | B.1.1.351 | 0.02514 |
N | 128 | D128D | gaC | gaT | 9 | 9 | B.1.240 | 0.00194 |
N | 128 | D128D | gaC | gaT | 9 | 9 | B.1.462 | 0.065217 |
N | 128 | D128D | gaC | gaT | 9 | 9 | Q.8 | 0.001484 |
N | 128 | D128D | gaC | gaT | 8 | 8 | AY.68 | 0.00219 |
N | 128 | D128D | gaC | gaT | 8 | 8 | B.1.1.28 | 0.00249 |
N | 128 | D128D | gaC | gaT | 8 | 8 | B.1.1.409 | 0.022663 |
N | 128 | D128D | gaC | gaT | 8 | 8 | B.1.139 | 0.005865 |
N | 128 | D128D | gaC | gaT | 8 | 8 | B.1.177.75 | 0.008325 |
N | 128 | D128D | gaC | gaT | 7 | 7 | AY.109 | 0.005178 |
N | 128 | D128D | gaC | gaT | 7 | 7 | B.1.1.348 | 0.005573 |
N | 128 | D128D | gaC | gaT | 7 | 7 | B.1.1.485 | 0.116667 |
N | 128 | D128D | gaC | gaT | 7 | 7 | B.1.239 | 0.008547 |
N | 128 | D128D | gaC | gaT | 6 | 6 | AY.106 | 0.002009 |
N | 128 | D128D | gaC | gaT | 6 | 6 | AY.111 | 0.001099 |
N | 128 | D128D | gaC | gaT | 6 | 6 | AY.27 | 0.000388 |
N | 128 | D128D | gaC | gaT | 6 | 6 | AY.29.1 | 0.001323 |
N | 128 | D128D | gaC | gaT | 6 | 6 | AY.4.3 | 0.005051 |
N | 128 | D128D | gaC | gaT | 6 | 6 | AY.41 | 0.001764 |
N | 128 | D128D | gaC | gaT | 6 | 6 | AY.73 | 0.003992 |
N | 128 | D128D | gaC | gaT | 6 | 6 | AY.9 | 0.000406 |
N | 128 | D128D | gaC | gaT | 6 | 6 | AY.93 | 0.001638 |
N | 128 | D128D | gaC | gaT | 6 | 6 | B.1.258.11 | 0.002378 |
N | 128 | D128D | gaC | gaT | 6 | 6 | B.1.258.3 | 0.01005 |
N | 128 | D128D | gaC | gaT | 6 | 6 | B.1.36.29 | 0.003104 |
N | 128 | D128D | gaC | gaT | 6 | 6 | P.1.16 | 0.002245 |
N | 128 | D128D | gaC | gaT | 6 | 6 | Q.3 | 0.00087 |
N | 128 | D128D | gaC | gaT | 5 | 5 | AY.116.1 | 0.001557 |
N | 128 | D128D | gaC | gaT | 5 | 5 | AY.6 | 0.000206 |
N | 128 | D128D | gaC | gaT | 5 | 5 | B.1.1.25 | 0.002843 |
N | 128 | D128D | gaC | gaT | 5 | 5 | B.1.177.44 | 0.002595 |
N | 128 | D128D | gaC | gaT | 5 | 5 | B.1.177.65 | 0.003327 |
N | 128 | D128D | gaC | gaT | 5 | 5 | B.1.232 | 0.002687 |
N | 128 | D128D | gaC | gaT | 5 | 5 | B.1.337 | 0.027933 |
N | 128 | D128D | gaC | gaT | 5 | 5 | B.1.438.1 | 0.000536 |
N | 128 | D128D | gaC | gaT | 5 | 5 | B.1.609 | 0.002397 |
N | 128 | D128D | gaC | gaT | 5 | 5 | B.1.617.3 | 0.014925 |
N | 128 | D128D | gaC | gaT | 5 | 5 | C.36.3 | 0.002836 |
N | 128 | D128D | gaC | gaT | 5 | 5 | P.1.15 | 0.001162 |
N | 128 | D128D | gaC | gaT | 5 | 5 | P.1.7 | 0.001596 |
N | 128 | D128D | gaC | gaT | 4 | 4 | AY.116 | 0.001147 |
N | 128 | D128D | gaC | gaT | 4 | 4 | AY.12 | 0.001264 |
N | 128 | D128D | gaC | gaT | 4 | 4 | AY.37 | 0.001264 |
N | 128 | D128D | gaC | gaT | 4 | 4 | AY.98 | 0.000316 |
N | 128 | D128D | gaC | gaT | 4 | 4 | B.1.1.161 | 0.014134 |
N | 128 | D128D | gaC | gaT | 4 | 4 | B.1.1.294 | 0.005063 |
N | 128 | D128D | gaC | gaT | 4 | 4 | B.1.1.339 | 0.042105 |
N | 128 | D128D | gaC | gaT | 4 | 4 | B.1.1.39 | 0.002039 |
N | 128 | D128D | gaC | gaT | 4 | 4 | B.1.177.7 | 0.000659 |
N | 128 | D128D | gaC | gaT | 4 | 4 | B.1.177.73 | 0.002265 |
N | 128 | D128D | gaC | gaT | 4 | 4 | B.1.177.79 | 0.009368 |
N | 128 | D128D | gaC | gaT | 4 | 4 | B.1.177.81 | 0.000757 |
N | 128 | D128D | gaC | gaT | 4 | 4 | B.1.311 | 0.001098 |
N | 128 | D128D | gaC | gaT | 4 | 4 | B.1.36.39 | 0.008869 |
N | 128 | D128D | gaC | gaT | 4 | 4 | B.1.474 | 0.007605 |
N | 128 | D128D | gaC | gaT | 4 | 4 | B.1.502 | 0.210526 |
N | 128 | D128D | gaC | gaT | 4 | 4 | B.1.523 | 0.009804 |
N | 128 | D128D | gaC | gaT | 4 | 4 | C.30 | 0.006908 |
N | 128 | D128D | gaC | gaT | 4 | 4 | P.1.12 | 0.001936 |
N | 128 | D128D | gaC | gaT | 3 | 3 | A | 0.001161 |
N | 128 | D128D | gaC | gaT | 3 | 3 | A.1 | 0.000846 |
N | 128 | D128D | gaC | gaT | 3 | 3 | A.3 | 0.006289 |
N | 128 | D128D | gaC | gaT | 3 | 3 | AY.102 | 0.00008 |
N | 128 | D128D | gaC | gaT | 3 | 3 | AY.19 | 0.003421 |
N | 128 | D128D | gaC | gaT | 3 | 3 | AY.24 | 0.001293 |
N | 128 | D128D | gaC | gaT | 3 | 3 | AY.4.1 | 0.002212 |
N | 128 | D128D | gaC | gaT | 3 | 3 | AY.4.4 | 0.001227 |
N | 128 | D128D | gaC | gaT | 3 | 3 | AY.5.3 | 0.001012 |
N | 128 | D128D | gaC | gaT | 3 | 3 | AY.85 | 0.001282 |
N | 128 | D128D | gaC | gaT | 3 | 3 | B.1.1.141 | 0.006036 |
N | 128 | D128D | gaC | gaT | 3 | 3 | B.1.1.263 | 0.004673 |
N | 128 | D128D | gaC | gaT | 3 | 3 | B.1.1.279 | 0.003363 |
N | 128 | D128D | gaC | gaT | 3 | 3 | B.1.1.397 | 0.006757 |
N | 128 | D128D | gaC | gaT | 3 | 3 | B.1.1.83 | 0.00813 |
N | 128 | D128D | gaC | gaT | 3 | 3 | B.1.177.16 | 0.001993 |
N | 128 | D128D | gaC | gaT | 3 | 3 | B.1.189 | 0.012876 |
N | 128 | D128D | gaC | gaT | 3 | 3 | B.1.201 | 0.017045 |
N | 128 | D128D | gaC | gaT | 3 | 3 | B.1.206 | 0.002447 |
N | 128 | D128D | gaC | gaT | 3 | 3 | B.1.241 | 0.002435 |
N | 128 | D128D | gaC | gaT | 3 | 3 | B.1.400 | 0.001287 |
N | 128 | D128D | gaC | gaT | 3 | 3 | B.1.416 | 0.003807 |
N | 128 | D128D | gaC | gaT | 3 | 3 | B.1.580 | 0.012195 |
N | 128 | D128D | gaC | gaT | 3 | 3 | B.1.623 | 0.001609 |
N | 128 | D128D | gaC | gaT | 3 | 3 | B.1.638 | 0.157895 |
N | 128 | D128D | gaC | gaT | 3 | 3 | C.35 | 0.002322 |
N | 128 | D128D | gaC | gaT | 3 | 3 | N.7 | 0.088235 |
N | 128 | D128D | gaC | gaT | 3 | 3 | Q.7 | 0.003333 |
N | 128 | D128D | gaC | gaT | 2 | 2 | 0.111111 | |
N | 128 | D128D | gaC | gaT | 2 | 2 | AY.110 | 0.000225 |
N | 128 | D128D | gaC | gaT | 2 | 2 | AY.46.4 | 0.000329 |
N | 128 | D128D | gaC | gaT | 2 | 2 | AY.62 | 0.000871 |
N | 128 | D128D | gaC | gaT | 2 | 2 | AY.69 | 0.000373 |
N | 128 | D128D | gaC | gaT | 2 | 2 | AY.94 | 0.000885 |
N | 128 | D128D | gaC | gaT | 2 | 2 | B.1.1.176 | 0.000879 |
N | 128 | D128D | gaC | gaT | 2 | 2 | B.1.1.189 | 0.003026 |
N | 128 | D128D | gaC | gaT | 2 | 2 | B.1.1.192 | 0.004619 |
N | 128 | D128D | gaC | gaT | 2 | 2 | B.1.1.269 | 0.002706 |
N | 128 | D128D | gaC | gaT | 2 | 2 | B.1.160.26 | 0.004843 |
N | 128 | D128D | gaC | gaT | 2 | 2 | B.1.177.12 | 0.000303 |
N | 128 | D128D | gaC | gaT | 2 | 2 | B.1.177.32 | 0.002699 |
N | 128 | D128D | gaC | gaT | 2 | 2 | B.1.221.2 | 0.008032 |
N | 128 | D128D | gaC | gaT | 2 | 2 | B.1.236 | 0.004107 |
N | 128 | D128D | gaC | gaT | 2 | 2 | B.1.260 | 0.006689 |
N | 128 | D128D | gaC | gaT | 2 | 2 | B.1.280 | 0.014286 |
N | 128 | D128D | gaC | gaT | 2 | 2 | B.1.3 | 0.005236 |
N | 128 | D128D | gaC | gaT | 2 | 2 | B.1.320 | 0.002491 |
N | 128 | D128D | gaC | gaT | 2 | 2 | B.1.36.16 | 0.002849 |
N | 128 | D128D | gaC | gaT | 2 | 2 | B.1.36.21 | 0.00432 |
N | 128 | D128D | gaC | gaT | 2 | 2 | B.1.36.35 | 0.005208 |
N | 128 | D128D | gaC | gaT | 2 | 2 | B.1.36.9 | 0.006431 |
N | 128 | D128D | gaC | gaT | 2 | 2 | B.1.367 | 0.001585 |
N | 128 | D128D | gaC | gaT | 2 | 2 | B.1.375 | 0.001639 |
N | 128 | D128D | gaC | gaT | 2 | 2 | B.1.389 | 0.002004 |
N | 128 | D128D | gaC | gaT | 2 | 2 | B.1.459 | 0.008163 |
N | 128 | D128D | gaC | gaT | 2 | 2 | B.1.480 | 0.004975 |
N | 128 | D128D | gaC | gaT | 2 | 2 | B.1.561 | 0.000794 |
N | 128 | D128D | gaC | gaT | 2 | 2 | B.1.568 | 0.002222 |
N | 128 | D128D | gaC | gaT | 2 | 2 | B.1.575 | 0.000607 |
N | 128 | D128D | gaC | gaT | 2 | 2 | B.1.576 | 0.001813 |
N | 128 | D128D | gaC | gaT | 2 | 2 | B.1.582 | 0.000981 |
N | 128 | D128D | gaC | gaT | 2 | 2 | B.1.625 | 0.004706 |
N | 128 | D128D | gaC | gaT | 2 | 2 | B.6 | 0.00182 |
N | 128 | D128D | gaC | gaT | 2 | 2 | P.1.4 | 0.001953 |
N | 128 | D128D | gaC | gaT | 1 | 1 | A.5 | 0.001923 |
N | 128 | D128D | gaC | gaT | 1 | 1 | AD.2 | 0.000219 |
N | 128 | D128D | gaC | gaT | 1 | 1 | AM.2 | 0.111111 |
N | 128 | D128D | gaC | gaT | 1 | 1 | AY.101 | 0.00049 |
N | 128 | D128D | gaC | gaT | 1 | 1 | AY.104 | 0.001984 |
N | 128 | D128D | gaC | gaT | 1 | 1 | AY.108 | 0.001103 |
N | 128 | D128D | gaC | gaT | 1 | 1 | AY.120.1 | 0.000321 |
N | 128 | D128D | gaC | gaT | 1 | 1 | AY.120.2 | 0.001285 |
N | 128 | D128D | gaC | gaT | 1 | 1 | AY.120.2.1 | 0.000498 |
N | 128 | D128D | gaC | gaT | 1 | 1 | AY.14 | 0.000088 |
N | 128 | D128D | gaC | gaT | 1 | 1 | AY.16.1 | 0.00047 |
N | 128 | D128D | gaC | gaT | 1 | 1 | AY.38 | 0.000499 |
N | 128 | D128D | gaC | gaT | 1 | 1 | AY.39.2 | 0.001541 |
N | 128 | D128D | gaC | gaT | 1 | 1 | AY.46.2 | 0.000635 |
N | 128 | D128D | gaC | gaT | 1 | 1 | AY.46.5 | 0.000198 |
N | 128 | D128D | gaC | gaT | 1 | 1 | AY.5.2 | 0.002463 |
N | 128 | D128D | gaC | gaT | 1 | 1 | AY.58 | 0.000907 |
N | 128 | D128D | gaC | gaT | 1 | 1 | AY.59 | 0.00053 |
N | 128 | D128D | gaC | gaT | 1 | 1 | AY.67 | 0.000464 |
N | 128 | D128D | gaC | gaT | 1 | 1 | AY.76 | 0.004831 |
N | 128 | D128D | gaC | gaT | 1 | 1 | AY.9.2.1 | 0.001976 |
N | 128 | D128D | gaC | gaT | 1 | 1 | AY.95 | 0.000761 |
N | 128 | D128D | gaC | gaT | 1 | 1 | AY.99.1 | 0.001553 |
N | 128 | D128D | gaC | gaT | 1 | 1 | AZ.3 | 0.00152 |
N | 128 | D128D | gaC | gaT | 1 | 1 | B.1.1.10 | 0.001115 |
N | 128 | D128D | gaC | gaT | 1 | 1 | B.1.1.157 | 0.000913 |
N | 128 | D128D | gaC | gaT | 1 | 1 | B.1.1.171 | 0.003676 |
N | 128 | D128D | gaC | gaT | 1 | 1 | B.1.1.220 | 0.001859 |
N | 128 | D128D | gaC | gaT | 1 | 1 | B.1.1.228 | 0.003049 |
N | 128 | D128D | gaC | gaT | 1 | 1 | B.1.1.265 | 0.003155 |
N | 128 | D128D | gaC | gaT | 1 | 1 | B.1.1.267 | 0.010101 |
N | 128 | D128D | gaC | gaT | 1 | 1 | B.1.1.284 | 0.000107 |
N | 128 | D128D | gaC | gaT | 1 | 1 | B.1.1.288 | 0.001916 |
N | 128 | D128D | gaC | gaT | 1 | 1 | B.1.1.302 | 0.002075 |
N | 128 | D128D | gaC | gaT | 1 | 1 | B.1.1.306 | 0.000438 |
N | 128 | D128D | gaC | gaT | 1 | 1 | B.1.1.311 | 0.000358 |
N | 128 | D128D | gaC | gaT | 1 | 1 | B.1.1.319 | 0.017544 |
N | 128 | D128D | gaC | gaT | 1 | 1 | B.1.1.320 | 0.018182 |
N | 128 | D128D | gaC | gaT | 1 | 1 | B.1.1.335 | 0.012987 |
N | 128 | D128D | gaC | gaT | 1 | 1 | B.1.1.336 | 0.016667 |
N | 128 | D128D | gaC | gaT | 1 | 1 | B.1.1.347 | 0.018182 |
N | 128 | D128D | gaC | gaT | 1 | 1 | B.1.1.363 | 0.005988 |
N | 128 | D128D | gaC | gaT | 1 | 1 | B.1.1.368 | 0.003086 |
N | 128 | D128D | gaC | gaT | 1 | 1 | B.1.1.37 | 0.000193 |
N | 128 | D128D | gaC | gaT | 1 | 1 | B.1.1.371 | 0.010417 |
N | 128 | D128D | gaC | gaT | 1 | 1 | B.1.1.375 | 0.011905 |
N | 128 | D128D | gaC | gaT | 1 | 1 | B.1.1.413 | 0.006897 |
N | 128 | D128D | gaC | gaT | 1 | 1 | B.1.1.417 | 0.002703 |
N | 128 | D128D | gaC | gaT | 1 | 1 | B.1.1.461 | 0.012048 |
N | 128 | D128D | gaC | gaT | 1 | 1 | B.1.1.47 | 0.005348 |
N | 128 | D128D | gaC | gaT | 1 | 1 | B.1.1.486 | 0.001577 |
N | 128 | D128D | gaC | gaT | 1 | 1 | B.1.1.50 | 0.000679 |
N | 128 | D128D | gaC | gaT | 1 | 1 | B.1.1.507 | 0.008696 |
N | 128 | D128D | gaC | gaT | 1 | 1 | B.1.1.518 | 0.006329 |
N | 128 | D128D | gaC | gaT | 1 | 1 | B.1.1.524 | 0.020833 |
N | 128 | D128D | gaC | gaT | 1 | 1 | B.1.1.528 | 0.004808 |
N | 128 | D128D | gaC | gaT | 1 | 1 | B.1.1.59 | 0.006494 |
N | 128 | D128D | gaC | gaT | 1 | 1 | B.1.1.70 | 0.000341 |
N | 128 | D128D | gaC | gaT | 1 | 1 | B.1.1.90 | 0.1 |
N | 128 | D128D | gaC | gaT | 1 | 1 | B.1.115 | 0.021739 |
N | 128 | D128D | gaC | gaT | 1 | 1 | B.1.143 | 0.021277 |
N | 128 | D128D | gaC | gaT | 1 | 1 | B.1.147 | 0.000756 |
N | 128 | D128D | gaC | gaT | 1 | 1 | B.1.157 | 0.002985 |
N | 128 | D128D | gaC | gaT | 1 | 1 | B.1.160.32 | 0.004292 |
N | 128 | D128D | gaC | gaT | 1 | 1 | B.1.160.9 | 0.007194 |
N | 128 | D128D | gaC | gaT | 1 | 1 | B.1.177.10 | 0.000878 |
N | 128 | D128D | gaC | gaT | 1 | 1 | B.1.177.15 | 0.000631 |
N | 128 | D128D | gaC | gaT | 1 | 1 | B.1.177.17 | 0.000821 |
N | 128 | D128D | gaC | gaT | 1 | 1 | B.1.177.33 | 0.001645 |
N | 128 | D128D | gaC | gaT | 1 | 1 | B.1.177.35 | 0.000691 |
N | 128 | D128D | gaC | gaT | 1 | 1 | B.1.177.51 | 0.004566 |
N | 128 | D128D | gaC | gaT | 1 | 1 | B.1.177.54 | 0.000606 |
N | 128 | D128D | gaC | gaT | 1 | 1 | B.1.177.57 | 0.000281 |
N | 128 | D128D | gaC | gaT | 1 | 1 | B.1.177.58 | 0.001332 |
N | 128 | D128D | gaC | gaT | 1 | 1 | B.1.177.69 | 0.001484 |
N | 128 | D128D | gaC | gaT | 1 | 1 | B.1.177.80 | 0.001912 |
N | 128 | D128D | gaC | gaT | 1 | 1 | B.1.210 | 0.002132 |
N | 128 | D128D | gaC | gaT | 1 | 1 | B.1.247 | 0.014925 |
N | 128 | D128D | gaC | gaT | 1 | 1 | B.1.258.16 | 0.001637 |
N | 128 | D128D | gaC | gaT | 1 | 1 | B.1.265 | 0.001271 |
N | 128 | D128D | gaC | gaT | 1 | 1 | B.1.277 | 0.02381 |
N | 128 | D128D | gaC | gaT | 1 | 1 | B.1.324 | 0.001605 |
N | 128 | D128D | gaC | gaT | 1 | 1 | B.1.334 | 0.018182 |
N | 128 | D128D | gaC | gaT | 1 | 1 | B.1.349 | 0.000715 |
N | 128 | D128D | gaC | gaT | 1 | 1 | B.1.35 | 0.008475 |
N | 128 | D128D | gaC | gaT | 1 | 1 | B.1.351.2 | 0.000303 |
N | 128 | D128D | gaC | gaT | 1 | 1 | B.1.36.12 | 0.009615 |
N | 128 | D128D | gaC | gaT | 1 | 1 | B.1.36.18 | 0.00042 |
N | 128 | D128D | gaC | gaT | 1 | 1 | B.1.36.19 | 0.009259 |
N | 128 | D128D | gaC | gaT | 1 | 1 | B.1.36.31 | 0.001751 |
N | 128 | D128D | gaC | gaT | 1 | 1 | B.1.361 | 0.001289 |
N | 128 | D128D | gaC | gaT | 1 | 1 | B.1.397 | 0.004854 |
N | 128 | D128D | gaC | gaT | 1 | 1 | B.1.398 | 0.002976 |
N | 128 | D128D | gaC | gaT | 1 | 1 | B.1.399 | 0.001934 |
N | 128 | D128D | gaC | gaT | 1 | 1 | B.1.404 | 0.001302 |
N | 128 | D128D | gaC | gaT | 1 | 1 | B.1.432 | 0.011236 |
N | 128 | D128D | gaC | gaT | 1 | 1 | B.1.439 | 0.005917 |
N | 128 | D128D | gaC | gaT | 1 | 1 | B.1.443 | 0.004673 |
N | 128 | D128D | gaC | gaT | 1 | 1 | B.1.456 | 0.003268 |
N | 128 | D128D | gaC | gaT | 1 | 1 | B.1.471 | 0.002732 |
N | 128 | D128D | gaC | gaT | 1 | 1 | B.1.520 | 0.021739 |
N | 128 | D128D | gaC | gaT | 1 | 1 | B.1.543 | 0.01 |
N | 128 | D128D | gaC | gaT | 1 | 1 | B.1.549 | 0.007194 |
N | 128 | D128D | gaC | gaT | 1 | 1 | B.1.565 | 0.00081 |
N | 128 | D128D | gaC | gaT | 1 | 1 | B.1.587 | 0.001898 |
N | 128 | D128D | gaC | gaT | 1 | 1 | B.1.597 | 0.00463 |
N | 128 | D128D | gaC | gaT | 1 | 1 | B.1.618 | 0.004032 |
N | 128 | D128D | gaC | gaT | 1 | 1 | B.1.619.1 | 0.000641 |
N | 128 | D128D | gaC | gaT | 1 | 1 | B.1.620 | 0.000946 |
N | 128 | D128D | gaC | gaT | 1 | 1 | B.1.630 | 0.005236 |
N | 128 | D128D | gaC | gaT | 1 | 1 | B.1.8 | 0.001972 |
N | 128 | D128D | gaC | gaT | 1 | 1 | B.3 | 0.000831 |
N | 128 | D128D | gaC | gaT | 1 | 1 | B.37 | 0.028571 |
N | 128 | D128D | gaC | gaT | 1 | 1 | B.40 | 0.000364 |
N | 128 | D128D | gaC | gaT | 1 | 1 | C.16 | 0.00106 |
N | 128 | D128D | gaC | gaT | 1 | 1 | C.37.1 | 0.002618 |
N | 128 | D128D | gaC | gaT | 1 | 1 | C.4 | 0.01 |
N | 128 | D128D | gaC | gaT | 1 | 1 | N.3 | 0.005814 |
N | 128 | D128D | gaC | gaT | 1 | 1 | N.6 | 0.007092 |
N | 128 | D128D | gaC | gaT | 1 | 1 | N.9 | 0.005952 |
N | 128 | D128D | gaC | gaT | 1 | 1 | P.1.10 | 0.000269 |
N | 128 | D128D | gaC | gaT | 1 | 1 | P.1.13 | 0.000898 |
N | 128 | D128D | gaC | gaT | 1 | 1 | P.1.9 | 0.004808 |
N | 128 | D128D | gaC | gaT | 1 | 1 | P.3 | 0.001595 |
N | 128 | D128D | gaC | gaT | 1 | 1 | Z.1 | 0.00289 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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