CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : Mut = A252S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N252A252SnonsynGctTct33793379129027-29029

Details of the mutation A252S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N252A252SGctTct33793379All0.000646
N252A252SGctTct478478AY.40.000744
N252A252SGctTct414414B.1.1.70.000371
N252A252SGctTct404404AY.390.009983
N252A252SGctTct315315B.1.1.2980.271552
N252A252SGctTct288288B.1.177.190.412017
N252A252SGctTct128128B.1.3510.003805
N252A252SGctTct104104B.1.617.20.000392
N252A252SGctTct8181AY.430.000359
N252A252SGctTct8080B.1.2430.005567
N252A252SGctTct7272AY.1030.000447
N252A252SGctTct6666B.10.000605
N252A252SGctTct6060B.1.177.790.140515
N252A252SGctTct5454B.1.1600.001684
N252A252SGctTct5353AY.440.000323
N252A252SGctTct4545AY.9.2.10.088933
N252A252SGctTct4141AY.30.000408
N252A252SGctTct3636AY.800.040632
N252A252SGctTct3030AY.250.00018
N252A252SGctTct2929B.1.10.000526
N252A252SGctTct2727B.1.20.000238
N252A252SGctTct2727P.10.000425
N252A252SGctTct2626B.1.1770.000342
N252A252SGctTct2020B.1.1.2070.023641
N252A252SGctTct2020B.1.1.700.006821
N252A252SGctTct1515B.1.1.3690.006693
N252A252SGctTct1515B.1.177.291
N252A252SGctTct1414B.1.1.5190.000556
N252A252SGctTct1313B.1.1200.1
N252A252SGctTct1313B.1.4290.000306
N252A252SGctTct1212B.1.5260.000282
N252A252SGctTct1111AY.1200.000409
N252A252SGctTct1010AY.200.000389
N252A252SGctTct99AY.1020.000239
N252A252SGctTct99AY.640.005357
N252A252SGctTct88AY.980.000632
N252A252SGctTct88B.1.1.1530.008762
N252A252SGctTct88B.1.5960.000697
N252A252SGctTct77AY.450.000852
N252A252SGctTct77AY.9.20.000257
N252A252SGctTct77AY.98.10.000339
N252A252SGctTct77B.1.5750.002124
N252A252SGctTct77P.1.70.002235
N252A252SGctTct66AY.1170.000507
N252A252SGctTct66AY.330.000401
N252A252SGctTct66AY.46.50.00119
N252A252SGctTct66AY.990.006296
N252A252SGctTct66B.1.1.3180.001811
N252A252SGctTct66D.20.00045
N252A252SGctTct66Q.40.002729
N252A252SGctTct55AY.1000.00023
N252A252SGctTct55AY.230.000349
N252A252SGctTct55AY.260.000142
N252A252SGctTct55AY.290.000079
N252A252SGctTct55AY.39.10.000198
N252A252SGctTct55AY.410.00147
N252A252SGctTct55AY.50.000103
N252A252SGctTct55AY.610.000524
N252A252SGctTct55B.1.1.3110.001791
N252A252SGctTct55B.1.2210.000355
N252A252SGctTct55B.1.351.30.004382
N252A252SGctTct55B.1.360.00073
N252A252SGctTct55B.1.619.10.003207
N252A252SGctTct44AY.1190.000141
N252A252SGctTct44AY.75.10.000721
N252A252SGctTct44AY.90.00027
N252A252SGctTct44B.1.177.210.000306
N252A252SGctTct44B.1.2580.000266
N252A252SGctTct33AY.16.10.00141
N252A252SGctTct33AY.460.000312
N252A252SGctTct33AY.470.000093
N252A252SGctTct33AY.7.10.000338
N252A252SGctTct33B0.000383
N252A252SGctTct33B.1.1.2220.000612
N252A252SGctTct33B.1.1.3060.001315
N252A252SGctTct33B.1.3690.000856
N252A252SGctTct33B.1.5250.000339
N252A252SGctTct33B.1.617.10.000387
N252A252SGctTct33B.40.006623
N252A252SGctTct33P.1.140.000143
N252A252SGctTct33P.1.40.00293
N252A252SGctTct22AY.1160.000574
N252A252SGctTct22AY.1210.000271
N252A252SGctTct22AY.140.000176
N252A252SGctTct22AY.300.000791
N252A252SGctTct22AY.360.000296
N252A252SGctTct22AY.4.20.000043
N252A252SGctTct22AY.4.50.000215
N252A252SGctTct22AY.5.30.000675
N252A252SGctTct22AY.530.000575
N252A252SGctTct22AY.770.002255
N252A252SGctTct22AY.9.10.000167
N252A252SGctTct22AY.940.000885
N252A252SGctTct22AY.950.001522
N252A252SGctTct22B.1.1.1640.010309
N252A252SGctTct22B.1.1.2140.000111
N252A252SGctTct22B.1.1.250.001137
N252A252SGctTct22B.1.1.330.000842
N252A252SGctTct22B.1.1.4340.000697
N252A252SGctTct22B.1.177.320.002699
N252A252SGctTct22B.1.177.730.001133
N252A252SGctTct22B.1.3010.011834
N252A252SGctTct22B.1.3960.001411
N252A252SGctTct22B.1.4270.000101
N252A252SGctTct22B.1.5390.035088
N252A252SGctTct22B.1.6210.000177
N252A252SGctTct22P.20.000373
N252A252SGctTct22R.10.00018
N252A252SGctTct11A0.000387
N252A252SGctTct11AY.1010.00049
N252A252SGctTct11AY.1060.000335
N252A252SGctTct11AY.1090.00074
N252A252SGctTct11AY.1100.000113
N252A252SGctTct11AY.1110.000183
N252A252SGctTct11AY.1130.000142
N252A252SGctTct11AY.1180.000063
N252A252SGctTct11AY.120.000316
N252A252SGctTct11AY.160.00038
N252A252SGctTct11AY.220.002092
N252A252SGctTct11AY.23.10.000417
N252A252SGctTct11AY.240.000431
N252A252SGctTct11AY.3.10.000085
N252A252SGctTct11AY.340.000097
N252A252SGctTct11AY.4.40.000409
N252A252SGctTct11AY.420.00004
N252A252SGctTct11AY.46.30.000934
N252A252SGctTct11AY.46.40.000165
N252A252SGctTct11AY.540.000095
N252A252SGctTct11AY.550.000917
N252A252SGctTct11AY.60.000041
N252A252SGctTct11AY.650.000533
N252A252SGctTct11AY.670.000464
N252A252SGctTct11AY.70.000196
N252A252SGctTct11AY.700.000209
N252A252SGctTct11AY.740.000116
N252A252SGctTct11AY.850.000427
N252A252SGctTct11AY.870.000833
N252A252SGctTct11AY.99.20.000092
N252A252SGctTct11B.1.1.100.001115
N252A252SGctTct11B.1.1.280.000311
N252A252SGctTct11B.1.1.2960.018182
N252A252SGctTct11B.1.1.3970.002252
N252A252SGctTct11B.1.1.4090.002833
N252A252SGctTct11B.1.1.5070.008696
N252A252SGctTct11B.1.1.580.005376
N252A252SGctTct11B.1.1.830.00271
N252A252SGctTct11B.1.110.30.000718
N252A252SGctTct11B.1.130.002375
N252A252SGctTct11B.1.1390.000733
N252A252SGctTct11B.1.160.260.002421
N252A252SGctTct11B.1.177.550.002331
N252A252SGctTct11B.1.177.570.000281
N252A252SGctTct11B.1.177.750.001041
N252A252SGctTct11B.1.2360.002053
N252A252SGctTct11B.1.2370.004975
N252A252SGctTct11B.1.2400.000216
N252A252SGctTct11B.1.258.110.000396
N252A252SGctTct11B.1.2650.001271
N252A252SGctTct11B.1.2810.021739
N252A252SGctTct11B.1.3110.000275
N252A252SGctTct11B.1.351.20.000303
N252A252SGctTct11B.1.36.350.002604
N252A252SGctTct11B.1.36.70.004
N252A252SGctTct11B.1.3670.000792
N252A252SGctTct11B.1.4090.000781
N252A252SGctTct11B.1.4590.004082
N252A252SGctTct11B.1.4730.019231
N252A252SGctTct11B.1.5170.000427
N252A252SGctTct11B.1.5230.002451
N252A252SGctTct11B.1.5240.001406
N252A252SGctTct11B.1.5400.009709
N252A252SGctTct11B.1.5600.00463
N252A252SGctTct11B.1.5610.000397
N252A252SGctTct11B.1.5700.002941
N252A252SGctTct11B.1.6100.003546
N252A252SGctTct11B.1.6200.000946
N252A252SGctTct11B.1.621.10.000506
N252A252SGctTct11B.1.6230.000536
N252A252SGctTct11B.1.6270.00202
N252A252SGctTct11B.400.000364
N252A252SGctTct11C.10.002392
N252A252SGctTct11C.260.007353
N252A252SGctTct11C.370.000116
N252A252SGctTct11P.1.100.000269
N252A252SGctTct11P.1.130.000898
N252A252SGctTct11P.1.170.000162
N252A252SGctTct11P.1.17.10.000875
N252A252SGctTct11Q.80.000165
N252A252SGctTct11U.10.012821

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.