CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : Mut = A217T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N217A217TnonsynGctAct2552450.96078428922-28924
N217A217TnonsynGcTAcA25590.035294128922-28924
N217A217TnonsynGcTAcC25510.0039215728922-28924

Details of the mutation A217T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N217A217TGctAct245255All0.000047
N217A217TGcTAcA9255All0.000002
N217A217TGcTAcC1255All0
N217A217TGctAct3535AY.40.000054
N217A217TGctAct2129B.1.466.20.008216
N217A217TGcTAcA829B.1.466.20.00313
N217A217TGctAct2525B.1.20.00022
N217A217TGctAct2121B.1.1600.000655
N217A217TGctAct1919B.1.1.70.000017
N217A217TGctAct1818AY.430.00008
N217A217TGctAct1718B.1.617.20.000064
N217A217TGcTAcA118B.1.617.20.000004
N217A217TGctAct1010AY.440.000061
N217A217TGctAct77AY.30.00007
N217A217TGctAct77B.1.3510.000208
N217A217TGctAct66B.10.000055
N217A217TGctAct55AY.140.00044
N217A217TGctAct55AY.390.000124
N217A217TGctAct55B.1.1.5190.000199
N217A217TGctAct55P.10.000079
N217A217TGctAct44B.1.214.20.002398
N217A217TGctAct44B.1.4410.038462
N217A217TGctAct22AY.1030.000012
N217A217TGctAct22AY.46.60.000144
N217A217TGctAct22AY.98.10.000097
N217A217TGctAct22B.1.6210.000177
N217A217TGctAct11AU.20.002421
N217A217TGctAct11AY.116.10.000311
N217A217TGctAct11AY.200.000039
N217A217TGctAct11AY.230.00007
N217A217TGctAct11AY.250.000006
N217A217TGctAct11AY.3.10.000085
N217A217TGctAct11AY.330.000067
N217A217TGctAct11AY.4.50.000107
N217A217TGctAct11AY.450.000122
N217A217TGctAct11AY.460.000104
N217A217TGctAct11AY.570.000656
N217A217TGctAct11AY.90.000068
N217A217TGctAct11AY.940.000443
N217A217TGctAct11AY.960.002075
N217A217TGctAct11AY.99.10.001553
N217A217TGcTAcC11B.1.10.000018
N217A217TGctAct11B.1.1770.000013
N217A217TGctAct11B.1.214.30.007143
N217A217TGctAct11B.1.3700.008
N217A217TGctAct11B.1.4290.000024
N217A217TGctAct11B.1.5250.000113
N217A217TGctAct11P.1.140.000048
N217A217TGctAct11P.1.150.000232
N217A217TGctAct11Q.40.000455

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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