CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
N | 211 | A211del | del | GCT | --- | 1005 | 1005 | 1 | 28904-28906 |
Details of the mutation A211del within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
N | 211 | A211del | GCT | --- | 1005 | 1005 | All | 0.000192 |
N | 211 | A211del | GCT | --- | 253 | 253 | B.1.1.7 | 0.000226 |
N | 211 | A211del | GCT | --- | 200 | 200 | AY.4 | 0.000311 |
N | 211 | A211del | GCT | --- | 82 | 82 | AY.103 | 0.000509 |
N | 211 | A211del | GCT | --- | 53 | 53 | D.2 | 0.003977 |
N | 211 | A211del | GCT | --- | 46 | 46 | B.1.1 | 0.000834 |
N | 211 | A211del | GCT | --- | 42 | 42 | AY.4.2 | 0.000911 |
N | 211 | A211del | GCT | --- | 30 | 30 | AY.43 | 0.000133 |
N | 211 | A211del | GCT | --- | 27 | 27 | AY.99.2 | 0.002488 |
N | 211 | A211del | GCT | --- | 22 | 22 | AY.44 | 0.000134 |
N | 211 | A211del | GCT | --- | 21 | 21 | AY.25 | 0.000126 |
N | 211 | A211del | GCT | --- | 20 | 20 | AY.3 | 0.000199 |
N | 211 | A211del | GCT | --- | 18 | 18 | AY.120 | 0.000669 |
N | 211 | A211del | GCT | --- | 18 | 18 | B.1.617.2 | 0.000068 |
N | 211 | A211del | GCT | --- | 17 | 17 | B.1.1.519 | 0.000675 |
N | 211 | A211del | GCT | --- | 12 | 12 | B.1 | 0.00011 |
N | 211 | A211del | GCT | --- | 11 | 11 | B.1.627 | 0.022222 |
N | 211 | A211del | GCT | --- | 7 | 7 | AY.21 | 0.013283 |
N | 211 | A211del | GCT | --- | 6 | 6 | AY.100 | 0.000276 |
N | 211 | A211del | GCT | --- | 5 | 5 | AY.117 | 0.000423 |
N | 211 | A211del | GCT | --- | 5 | 5 | AY.39 | 0.000124 |
N | 211 | A211del | GCT | --- | 5 | 5 | AY.59 | 0.002648 |
N | 211 | A211del | GCT | --- | 4 | 4 | AY.102 | 0.000106 |
N | 211 | A211del | GCT | --- | 4 | 4 | AY.20 | 0.000155 |
N | 211 | A211del | GCT | --- | 4 | 4 | AY.5 | 0.000083 |
N | 211 | A211del | GCT | --- | 4 | 4 | B.1.177 | 0.000053 |
N | 211 | A211del | GCT | --- | 4 | 4 | Q.3 | 0.00058 |
N | 211 | A211del | GCT | --- | 3 | 3 | AY.118 | 0.000188 |
N | 211 | A211del | GCT | --- | 3 | 3 | B.1.1.117 | 0.029126 |
N | 211 | A211del | GCT | --- | 3 | 3 | B.1.1.170 | 0.003741 |
N | 211 | A211del | GCT | --- | 3 | 3 | B.1.628 | 0.001057 |
N | 211 | A211del | GCT | --- | 2 | 2 | AE.8 | 0.000978 |
N | 211 | A211del | GCT | --- | 2 | 2 | AY.23 | 0.000139 |
N | 211 | A211del | GCT | --- | 2 | 2 | AY.40 | 0.001929 |
N | 211 | A211del | GCT | --- | 2 | 2 | AY.50 | 0.001599 |
N | 211 | A211del | GCT | --- | 2 | 2 | B.1.1.214 | 0.000111 |
N | 211 | A211del | GCT | --- | 2 | 2 | B.1.1.28 | 0.000622 |
N | 211 | A211del | GCT | --- | 2 | 2 | B.1.1.370 | 0.025316 |
N | 211 | A211del | GCT | --- | 2 | 2 | B.1.1.432 | 0.002532 |
N | 211 | A211del | GCT | --- | 2 | 2 | B.1.2 | 0.000018 |
N | 211 | A211del | GCT | --- | 2 | 2 | B.1.351 | 0.000059 |
N | 211 | A211del | GCT | --- | 2 | 2 | P.1.14 | 0.000096 |
N | 211 | A211del | GCT | --- | 1 | 1 | AY.110 | 0.000113 |
N | 211 | A211del | GCT | --- | 1 | 1 | AY.116 | 0.000287 |
N | 211 | A211del | GCT | --- | 1 | 1 | AY.120.2 | 0.001285 |
N | 211 | A211del | GCT | --- | 1 | 1 | AY.121 | 0.000135 |
N | 211 | A211del | GCT | --- | 1 | 1 | AY.16.1 | 0.00047 |
N | 211 | A211del | GCT | --- | 1 | 1 | AY.26 | 0.000028 |
N | 211 | A211del | GCT | --- | 1 | 1 | AY.29 | 0.000016 |
N | 211 | A211del | GCT | --- | 1 | 1 | AY.29.1 | 0.000221 |
N | 211 | A211del | GCT | --- | 1 | 1 | AY.33 | 0.000067 |
N | 211 | A211del | GCT | --- | 1 | 1 | AY.4.2.1 | 0.000149 |
N | 211 | A211del | GCT | --- | 1 | 1 | AY.41 | 0.000294 |
N | 211 | A211del | GCT | --- | 1 | 1 | AY.42 | 0.00004 |
N | 211 | A211del | GCT | --- | 1 | 1 | AY.45 | 0.000122 |
N | 211 | A211del | GCT | --- | 1 | 1 | AY.46 | 0.000104 |
N | 211 | A211del | GCT | --- | 1 | 1 | AY.6 | 0.000041 |
N | 211 | A211del | GCT | --- | 1 | 1 | AY.75 | 0.000056 |
N | 211 | A211del | GCT | --- | 1 | 1 | AY.79 | 0.001211 |
N | 211 | A211del | GCT | --- | 1 | 1 | AY.9.2 | 0.000037 |
N | 211 | A211del | GCT | --- | 1 | 1 | AY.96 | 0.002075 |
N | 211 | A211del | GCT | --- | 1 | 1 | AY.98 | 0.000079 |
N | 211 | A211del | GCT | --- | 1 | 1 | B | 0.000128 |
N | 211 | A211del | GCT | --- | 1 | 1 | B.1.1.1 | 0.000327 |
N | 211 | A211del | GCT | --- | 1 | 1 | B.1.1.115 | 0.008929 |
N | 211 | A211del | GCT | --- | 1 | 1 | B.1.1.189 | 0.001513 |
N | 211 | A211del | GCT | --- | 1 | 1 | B.1.1.192 | 0.002309 |
N | 211 | A211del | GCT | --- | 1 | 1 | B.1.1.222 | 0.000204 |
N | 211 | A211del | GCT | --- | 1 | 1 | B.1.1.270 | 0.010309 |
N | 211 | A211del | GCT | --- | 1 | 1 | B.1.1.303 | 0.002762 |
N | 211 | A211del | GCT | --- | 1 | 1 | B.1.1.307 | 0.002532 |
N | 211 | A211del | GCT | --- | 1 | 1 | B.1.1.312 | 0.001912 |
N | 211 | A211del | GCT | --- | 1 | 1 | B.1.1.33 | 0.000421 |
N | 211 | A211del | GCT | --- | 1 | 1 | B.1.1.362 | 0.005618 |
N | 211 | A211del | GCT | --- | 1 | 1 | B.1.1.413 | 0.006897 |
N | 211 | A211del | GCT | --- | 1 | 1 | B.1.1.416 | 0.000905 |
N | 211 | A211del | GCT | --- | 1 | 1 | B.1.1.50 | 0.000679 |
N | 211 | A211del | GCT | --- | 1 | 1 | B.1.1.63 | 0.000386 |
N | 211 | A211del | GCT | --- | 1 | 1 | B.1.160 | 0.000031 |
N | 211 | A211del | GCT | --- | 1 | 1 | B.1.177.21 | 0.000076 |
N | 211 | A211del | GCT | --- | 1 | 1 | B.1.177.63 | 0.002703 |
N | 211 | A211del | GCT | --- | 1 | 1 | B.1.465 | 0.003802 |
N | 211 | A211del | GCT | --- | 1 | 1 | B.1.525 | 0.000113 |
N | 211 | A211del | GCT | --- | 1 | 1 | B.1.576 | 0.000907 |
N | 211 | A211del | GCT | --- | 1 | 1 | B.1.596 | 0.000087 |
N | 211 | A211del | GCT | --- | 1 | 1 | C.1 | 0.002392 |
N | 211 | A211del | GCT | --- | 1 | 1 | C.26 | 0.007353 |
N | 211 | A211del | GCT | --- | 1 | 1 | C.36 | 0.000911 |
N | 211 | A211del | GCT | --- | 1 | 1 | C.36.3 | 0.000567 |
N | 211 | A211del | GCT | --- | 1 | 1 | C.37.1 | 0.002618 |
N | 211 | A211del | GCT | --- | 1 | 1 | N.3 | 0.005814 |
N | 211 | A211del | GCT | --- | 1 | 1 | N.5 | 0.001767 |
N | 211 | A211del | GCT | --- | 1 | 1 | P.2 | 0.000187 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|